RNA id: XM_036951336.1


Basic Information

Item Value
RNA id XM_036951336.1
length 2366
RNA type mRNA
GC content 0.51
exon number 6
gene id ric3b
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57302760 ~ 57310851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACACTTCCGTTTTTCAGCGAAGGACGTGTGCACAAATGGATGATGCTGAGGAGCCCGACGCAGCATCCACTTGACCCTCTGTGTTGAATTGTTTGTGTATTCGTGTTGCCTTTTAAGTACATTTACCTGCAAAAGCAACCGTGCGGCTGTAACAATGTCGATGTCAACATTTCAAAAGGTTACGCTAGTGTCTTGTCTCGTGCTCTGCGTTGCTCTTCTGCTTCCGAAAATGCTGCTAGGCGGAGGGAAGGGTGCACAGACCGAGGGTTCAGGACGGTTTCCTCCCATGGTGCACCGGCAGATGGCTCCGGACAGTCAGGGCCAGAGTGCTGCTGGGTCCACCAGGGCACACAACACCGAGGCTATCGCCAGGGCTAAGGGGGGTGGGGGCACAGGGGTAGGAACCGGGGGCAAGTCCAACCTGGCAGGGCAGATCATCCCCATCTACGGCTTTGCGATCCTTCTTTACATCCTCTACATCCTGTTTAAGATAACCTCAAAGGGGAAGTGCGCTGTACCTTCTGAACCCAGatttccctcagtaagagcagaGAACCGGAAGAGAAAGATCAcgGACTTTGAGCTGACTCAGCTGCAGGATAagctgagggagacagagatggtgatggagaggaTTGTGTCCAAAGCCAGCTACAGTCCTGAAAGGGTGACAGGGGTGAGTGCCGACCAGGAGGAGAGACTGCTTCTCCAGCTGAGAGAGATCACGCGGGTGATGCAGGAGGGCCGCCTGGTGGAGGGGGTTGCCCCCACAGAGATGGGGGCACAACACTGGGAAGGTTTCCCAGAGGATCCCCATCCATGCTGGGAAGAGCCCTTCTGTGGATACGACCATACCCAGGCAACCAGCACAGAAGAGCAGCCAGAGAGGACCGACGAGTGTGGGGCTGACCAGGAGGGTGTGGCTTACCAGGAGAAGGGTGGGGCTTACCAGAAGGAGAGTGGGGCTTACCAGAAGGAGGGTGGGGCTTACCAGAAGGAAGGTGGGGCTGACCAGGAAGAGGGTGTGGCAAACAAGGAGAGTGGGGTTGACCAGGAAGAGGGCAGGGCTGACCAGAAAGACGTTGGGCTTAACCAGGAAGAGAGCGTAGTTGACCAGGAGGTGGTTGGGGTTGACCAGGATGAGGGCAGGGCTGACCAGAAAGACATTGGGCTTAACCAGGAAGAGAGCGTAGTTGACCAGGTGGTGGTTGGGGTTGACCAGGAAGAGGGCAGGGCTGACCAGAAAGACATTGGGCTTAACCAGGAAGAGAGCGTAGTTGACCAGGAGGTGGTTGGGATTGACCAGGAAGAGGGCAGGGCTGACCAGAAAGAAGGTGGGCTTGACCAGGAAGAGAGCGTAGTTGACCAGGAGGTGGTTAGAGTTGACCAAGAAGAGGGCAGGGCTGACCAGGAGGAGGGTGCGGCTGAGGATGATGTAGGTGTAGCTAAGGCAGGGGCTGATTTGAATACTGATGAGGAGGGATGTGCTGATTTGGCCACTGGGAATGAGGAATGTGGGGCTAAGCGTGATGTGGGTGGGACTGAGGTGGAGAAAGCAGGAATGGACAGGGAGGAGGGTGGGGCCAATGACAAGCTGGGTCTGGCTGATGAAGACAGGGGTGGTGCAGAGGAGGAGCTTGAGTTTACACTGAAGATGCCCACCATGTTGGAGCGAGAGGAAAAGGACGGTGTTAACCTGTCAACGGAGATGTCAACTAGCCGTTCTCGTGTTAGAAGGAAAAGGAACAAGAAGCAGAAGAAATGACCAAAAGAAAACAGAGTTGATTGACTTCCCCTAAATTCCTTCCTATAATTGGGAAAGTAGAGTGCGCCCCACAAACTTGAGTCTGGCTATGCCCGTCTAGCAACATTTCTTCCTAGCCTCCAATGCTTCCAAACAGGATGGGCCATAGCATGAAGGTTAGCAGTAGCCAGTCTATAAACATAGGATCAAAAAGCTCCACCTGAGAAAGATGGTATCTCTTCCTAAGTGACAGTCTGAAGCAGAAGTCATACCCACAGTATTGTACCAATGCTTTGTTCAGATGTTCACTATCGCATAATAGCTTTGGCACAATGCGCATTACAGTGAACTGAATGATTTGGAAGGCACTGTGCTCCTACAGTCTTGATTCACATCTGGGCTTGAGAGTATGCTTGTTGTCCTCTTAGTGCAATAAACCATAATTAGAATACATGGGAATGATCTTATTTCATGGGTATAAGTTATTGAAAAAGCATTCACTTTTATACACTATTTATTCACTACTGATGACTATATTTACCAGGAGCGTTATGTCAGCGTTACAAAAAAAGTAACTACTGTGGAATCTCACAAATAAAATATTCTGGTTTGACAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186007 lncRNA downstream 18722 57283827 ~ 57284038 (-) True G163131
TU186006 lncRNA downstream 19018 57283460 ~ 57283742 (-) True G163130
TU186003 lncRNA downstream 24365 57278160 ~ 57278395 (-) True G163127
TU185991 lncRNA downstream 41877 57260673 ~ 57260883 (-) True G163115
TU185989 lncRNA downstream 46071 57254147 ~ 57256689 (-) True G163113
TU186023 lncRNA upstream 3964 57314815 ~ 57315157 (-) True G163147
TU185978 lncRNA upstream 16969 57327820 ~ 57329185 (-) True G163104
TU186049 lncRNA upstream 135463 57446314 ~ 57449277 (-) False G163163
TU186052 lncRNA upstream 135463 57446314 ~ 57449277 (-) False G163163
TU186050 lncRNA upstream 135546 57446397 ~ 57449277 (-) True G163163
XM_036990280.1 mRNA downstream 52605 57244759 ~ 57250155 (-) False LOC100135818
XM_036990282.1 mRNA downstream 52605 57244759 ~ 57250155 (-) False LOC100135818
XM_036990288.1 mRNA downstream 52619 57245938 ~ 57250141 (-) False LOC100135818
NM_001124214.1 mRNA downstream 52656 57246461 ~ 57250104 (-) False LOC100135818
XM_036990272.1 mRNA downstream 53306 57245938 ~ 57249454 (-) False LOC100135818
XM_021566455.2 mRNA upstream 21300 57332151 ~ 57340310 (-) False c2h11orf16
XM_036934003.1 mRNA upstream 285099 57595950 ~ 57601508 (-) False LOC110492469
XM_036951689.1 mRNA upstream 486928 57797779 ~ 57815303 (-) False LOC110492538
XM_021566945.2 mRNA upstream 486928 57797779 ~ 57815595 (-) False LOC110492538
XM_036951679.1 mRNA upstream 486928 57797779 ~ 57837766 (-) False LOC110492538
TU185975 other downstream 52653 57244381 ~ 57250107 (-) False LOC100135818
TU185976 other downstream 52653 57244835 ~ 57250107 (-) True LOC100135818
TU185753 other downstream 61388 57240279 ~ 57241372 (-) True G162897
TU185596 other downstream 185610 57114567 ~ 57117150 (-) True G162745
TU185501 other downstream 472184 56827296 ~ 56830576 (-) False G162657
TU186027 other upstream 22227 57333078 ~ 57333902 (-) True c2h11orf16
TU186219 other upstream 284686 57595537 ~ 57600218 (-) False LOC110492469
TU186222 other upstream 284686 57595537 ~ 57600218 (-) False LOC110492469
TU186224 other upstream 284686 57595537 ~ 57600218 (-) True LOC110492469
TU186917 other upstream 465618 57776469 ~ 57789383 (-) True G163839

Expression Profile