RNA id: XM_021566728.2



Basic Information


Item Value
RNA id XM_021566728.2
length 1108
RNA type mRNA
GC content 0.46
exon number 5
gene id akip1
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57330396 ~ 57331987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGAGCTGGTTTGAGCCAATCCAGATAAGGGCGGTGCCCTAGACCGGAAATGTGACGACGTAGTCTTTACCGCAAGTTTAGTGCGCGCAAAAGTAACCAAAACAGGCCCAAGTGTTTGGGGATCTAATGGAGTGGTCACTGCACGTTGCTGCTCTGTCATATGTATGATACGCAACCACATAATTAGAGCGCACTACAATCCAAGGGAGGTTGTGACGGCCGCGTTGTGTCACGTTAACATTATGCTACAATTTTAGTCCTTGTCATAAAAGGGTCGTTTGTCAGTGTCTCGGGTACGGCAGAGATTTGACTCCCCGTGTTTTCGCATGGCAACACAAGCCTGGCAGCTGGAGTCATCACTGAGCCGCTCCGCCAGACTAGGCCTGGAAGTACTGGAGCGAGCGTCGAGACGGAGCGTAGACTGGACGAGTCCGTCTCCCAATACAACACCAACGGATCGCAACGCCGGGAGTGAGGTTCTGGGAAACTCAGCCCACACAAGCCTGGATGATGCTTTTGAGACCATAGCGGAATTCATGGCTCAGACAACATATCAATGCAAGAACTTTTACACATCGGAGAATGAGCCTATGGAAAAGGAGAGAACCCATGTGTGCAGATACCATTCTCAATCTCACCAATGCCCAGGGACCTCATTGCAGATCAGGAAACATGCACGGTCATCACCTGAGGATTTCCACATTGAGGTGTCACCAGGTACCTATGCGATTACCGCGGGAATGCAGGACTCGCAGCAACAGACCCGGCTAGTACGCATTAATGCAGGAGAGAGTATGAACCTCACCTTTCACCTCTAATCCCTAACCAATCCCCTTTGACCGTTCTGCTACAAATAACAAAACTGTCCAATCGGGAACGTTTACATATGTATTTTCAAGTGAGTCTTGTCTTCTGGATGAATTTGTGGCTTTAGAGCGACAGTAATACATTTATTAATTTGCTGCTAAATGAGAAGACATATTTTGATGATCTGATCAggattacattttttatattcAATTATTGTCTTATGTCTGCCTAAATGCATCACGTAATTATGTATTTTTTACCATATCAGTATAATAAAGTATATTTTATATCAATGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU185807 lncRNA upstream 11716 57318470 ~ 57318680 (+) True G162944
TU185802 lncRNA upstream 19565 57310584 ~ 57310831 (+) True G162939
TU185782 lncRNA upstream 52381 57277803 ~ 57278015 (+) True G162922
TU185076 lncRNA upstream 165560 57074503 ~ 57164836 (+) True G162270
TU185818 lncRNA downstream 14251 57346238 ~ 57346489 (+) True G162955
TU185912 lncRNA downstream 198963 57530950 ~ 57531175 (+) True G163047
TU185913 lncRNA downstream 199962 57531949 ~ 57532168 (+) True G163048
TU185914 lncRNA downstream 201961 57533948 ~ 57534243 (+) True G163049
TU185895 lncRNA downstream 204965 57536952 ~ 57537221 (+) True LOC110492340
XM_021566755.2 mRNA upstream 1212 57326328 ~ 57329184 (+) True rpl27a
XR_005039480.1 mRNA upstream 1946 57328320 ~ 57328450 (+) True LOC118944168
XR_005039481.1 mRNA upstream 2876 57327389 ~ 57327520 (+) True LOC118944169
XM_021566614.2 mRNA upstream 27514 57289492 ~ 57302882 (+) True LOC110492362
XM_036951218.1 mRNA upstream 302618 56870028 ~ 57027778 (+) False LOC110492317
XM_021566469.2 mRNA downstream 14873 57346860 ~ 57368863 (+) False LOC110492278
XM_021566477.2 mRNA downstream 14876 57346863 ~ 57368863 (+) True LOC110492278
XM_021566512.2 mRNA downstream 39589 57371576 ~ 57398186 (+) True swap70b
XM_021566659.2 mRNA downstream 98200 57430187 ~ 57432107 (+) False LOC110492386
XM_036951419.1 mRNA downstream 98200 57430187 ~ 57432107 (+) True LOC110492386
TU184934 other upstream 276754 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 1077798 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 1383151 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 2601536 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 2977008 54352983 ~ 54353388 (+) True G159415
TU186506 other downstream 596163 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 883690 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 2613721 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 3183645 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 3519445 60851432 ~ 60866455 (+) False LOC110493059

Expression Profile