RNA id: XM_036951382.1


Basic Information

Item Value
RNA id XM_036951382.1
length 3763
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC110492340
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57536947 ~ 57546176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGAGGTATTCACACAAGCAGCAGATGTTTGGCTTTCACAAGCCAAAGATGTACCGGAGTTTAGACGGCTGTTGCATTTGCCGCGCCAAGTCCTCCAGCTCACGCTTCACCGACAGCAAGCGGTACGAGAATGACTTCACGAGCTGTTTCGGATTATGTGAAACTCGGTCTGGAGAAATCTGCAATGCCTGTGTACTCCTGGTGAAACGATGTAAGAAACTCCCAGTGGGGTCTAAGAAAAACTGGAATCACGTGGTTGATGCCCGAGGAGGCCCCAGCCTAAAGATTTCCTCCAGGCCAAAGAAACGGAAGTCCCTCTCCAAGAGAGCCATGCCAATCCAGATCAGCCGACTGCAGAAAGAGCTAAAGAGGAACAACTCTGATGCCCACAGCACCACGTCCAGTGCCTCCCCGGCCCAGTCTCCCAGCTACAGCCACCCTTCAGATGAGGGCTCCGACACAGAGCTCTCCCCAGGCTCCAGCCGCTCCCCTGTCTTCTCCTTCCTGGACCTCACCTACTGGAAGAGGCAGAAGGTGTGTTGTGGGATCATCTACAAGGGCCGCTTTGGGGAGGTGCTCATCGACCCTCACCTCTTCAAGCCCTGCTGTCGCAAGAAACGGCAACAGCAGCGGCAGGATGAGGAGGTTGTGGAAGAGGTAGAAGTGGCGGAAGAGGTGGTGGTGAGGAAGGAAGACGAGGTGGTGAGGTCAAACAGCCAGGAGAGCTCAGAGAGTCCTCAGCTACAGGTCATCACGACAACATCTCAGACCAAAGTGGAGGTTGAGGAGGAAGACTGGCGATATTGCACCACAGTGTGAGCATCTTTGAGGAAGCCTACGGAATGCTTCTGGTTTACAAGCTCTTACAAGAAGAAGTTACCGCTGATTGCCTTTAGTCAGCGAGTAGCTGAATCCTGTCGTTTTGTTTGTTTGGTAACTTATAGACTGACTGAGGCATATGGACTAGTTTTTCCCCAATTCATCTGGTCTTGTTGTACTTAGTATTGTCCTGGGTTCGTCTTCATTAGGCTTGGGCATGCAACTGAAAATGTTTGAAAAAGTTCTGCAACGGAAAATGAGTATTTATTATTGGGCAAGTCCATGTAGTCCACTCCGTGTTGCAAATccattttcttccgtttggtgccttaTGAACACAACCCAGATGTTCGGACACCTCTCTTGGTGTTTTTCTCCTTGACATAAAATGCTGTAGTTTTGACTGATCGGCAGAATACCTTAATTAACAGGTAACAGCCGTACAGTAGCACTTGTATTATTGTGAAACAAATTCACATTCACACTATATTTATCTATTCTGTATATATGGGCCTGTATGTATTTCTATATGGGCCACGGTCGAGAGCCTGTTCACAGCACCAACAGCCAATACACCAGCCTTAATTTAGTGAGGGAAGGCAGTGCTAGTGTTTTGTCAGTGTTGGTACTTAGGGATGATATTAAGGGAAAATGTTCCAATTgaaacttcatattcatcatctccagcaccacacCAACACCGGTGTgtaaactgtgtttttttgtgttgtgtAATCAAAAAGATGCACACCAGAAAAGATATTATTCTAGATGATGTCATCTGGTGTGCATCATGtcattttaaccaattatgagttAGTAATTTTGACCAGGTGATGctcctgctcagacgttgcatgcatcaaccaatggttgcgtgccatTATAGCAACTGTGACATGGACTGATAGATTGCTATAACGTaggtggtcctgtgtggctcaattGGTAGAGCAAGTTGTTTACAATACCAAATATCATGGGTTCCATTCCCACTGAGGCCACCCGCatataaaagtgtctgctaaatggcatatgtatattattattatgtggttagctgatacgtaaaatacctatccaggtgtTGTAAGATTTGTCTGGTGTCAACAACGCCTAGGCTGAGGAACGCTACCAATTTCTAAAGTGTTTCCTGAATGATGTCCTCATCTTTTGTTACTACAAAATATAGAAATGGGCTGTTTTTATATATAGTATGTTGATGTTTGGTTggtggagatgatgaatatgaagttgaaaatgGTGAAATGTCTCCTTTTTTTAAGGCAATAGTTAGTGCTAGATAGGTAGTTTGCGTTTTCTCCAGCTTATTATGTTAACGTTTGCAACGGAGGCCTAAGGTTTTCAAAATGAAGTAAAGCAACACTAGTGTGCTTTGCATAAATGCCGAAGAAATAACCCCTCTCATCCAGAAGATCTGTAGATCAGATGCATGAGTCAAATATGCTATTTCATGACCTTAAAAGCATATTACTCTTATTTTAAATCTTGCTCTTATTTTCCAGACCCAATGCCCccaaagtattttttatttatatattacatataaaaCATGTCTTCACCATATTATAAATCAGCAAATGCAATAGTAACCTGTTCAGATCGTGAAATATTCCTCCTGGAGGCCTGGCTGGATACCTTTTTGGTTATTACTGTCAATAATGGGACATGATTGtcattaccacacacacagtggatCTACTGCAACAACTTAGACCTACAATGCAATGAAATAACCCACATGAGCACAACTCTATCTGTCCCCCCCTGTtgtcaaaaacattttttttattttttattctgggGAATTGTTATCTTTTCTATTTGTCTTTTGTCTGCAGGACTTCCGTATAATTTAAACTTCATGATACATATGTCAATTCTATTGATCGTTATTTAGGCATTTTATACTTTTGAGGACTTACTATCATGTTCAAACTTAGAATTCATCATTCCTTGGTTAGTTAAGCAACTGCTATATACTAGCCTACATTATCAAACCAAAACcaaagcacacttaaattcattCCATTTCAAATGCAAAACAGGTTATTTAGTCATTTATTTGTAACTTGAGTGGTATAAAAAGGACACTAAAATCAGTCTTTAATTATCCATACTATAGGGAAGATTGTATGTATATGGACATATTTCAATGGGGGGTTGAGGGCTTTCTaattaaatgtttatttatttcatattgactcggtacttcctgtatactgttatagctgtgttattttctactccctatatacagccatgtttattttatttgttattcacTGTATTTATTCCTccactatttatttttttcttattttatctctgcattgttggaaaaggacccataaataagcatttcactgttcgttTGTCTGCGAcgtatgtgactaataaactttgatttgtatTTGTGCATTTTCCCCATGTGACTATTCTGATGCTGGTTTCTCACTATGTAATAACTTAGATTTCACATTTAAAGTTCTGTGATATGGTTAGCATTTAATGTAGTTCTTAAGCAATCAGTCTAGTCTGAAATTCACAATGAACAGTATTTGTGAATTATTGGGAACAATAATCTTATCAACATTAATGTGTAGTAATTTAttatgtaatatactgtacaatAATTTGTTTGGACCTGTATCTTTGTATCAGGTATCCAGCCTGTTGAACTATGAATTTCAATGATTTGAGGTAGCCTATATTCCAATTTTACTTTCCTCTCATCTTTGCCCTGTAATGTTGCATATGACCTGCAAGTCGAATCTTTGCTTTAGTGCTTCATGCATGTATTGTAGCTATGCAATTGCATTTATTTACCAAGTTAGATCTAGACAAAGCAATGTTTTGTGTTTTATACATGATGTACTTTTTTGTACTAGTCTTTCAATAAAAATAATTTGTGATTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185895 lncRNA upstream 3455 57536952 ~ 57537221 (+) True LOC110492340
TU185914 lncRNA upstream 6433 57533948 ~ 57534243 (+) True G163049
TU185913 lncRNA upstream 8508 57531949 ~ 57532168 (+) True G163048
TU185912 lncRNA upstream 9501 57530950 ~ 57531175 (+) True G163047
TU185818 lncRNA upstream 194187 57346238 ~ 57346489 (+) True G162955
TU186279 lncRNA downstream 115776 57661952 ~ 57664441 (+) False G163352
TU186278 lncRNA downstream 117554 57663730 ~ 57664441 (+) True G163352
TU186330 lncRNA downstream 243531 57789707 ~ 57792414 (+) True G163362
TU186415 lncRNA downstream 248373 57794549 ~ 57794862 (+) True G163438
TU186451 lncRNA downstream 298947 57845123 ~ 57845437 (+) True G163464
XM_036951202.1 mRNA upstream 13593 57467108 ~ 57527083 (+) True LOC110492265
XM_021566627.2 mRNA upstream 82590 57454370 ~ 57458086 (+) False LOC110492368
XM_021566633.2 mRNA upstream 84360 57454374 ~ 57456316 (+) True LOC110492368
XM_021566646.2 mRNA upstream 86580 57449413 ~ 57454096 (+) True LOC110492381
XM_036951388.1 mRNA upstream 91412 57440823 ~ 57449264 (+) True LOC110492347
XM_021566693.2 mRNA downstream 4776 57550952 ~ 57556023 (+) False LOC110492398
XM_021566686.2 mRNA downstream 4777 57550953 ~ 57556023 (+) True LOC110492398
XM_021566525.2 mRNA downstream 10629 57556805 ~ 57560839 (+) True LOC110492308
XM_021566785.2 mRNA downstream 28072 57574248 ~ 57579830 (+) False LOC110492452
XM_036951521.1 mRNA downstream 28089 57574265 ~ 57579830 (+) False LOC110492452
TU184934 other upstream 487034 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 1288078 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 1593431 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 2811816 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 3187288 54352983 ~ 54353388 (+) True G159415
TU186506 other downstream 381974 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 669501 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 2399532 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 2969456 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 3305256 60851432 ~ 60866455 (+) False LOC110493059

Expression Profile