RNA id: XM_021566686.2


Basic Information

Item Value
RNA id XM_021566686.2
length 2084
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110492398
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57550952 ~ 57556023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTTCCTATGTCACATGATCAACATTCCCACAACACGGAAGTGCGGTGCAGCGTATCGTTCTGTTTCTCCAGAAATAAATGTTTCTCTTTGCCACAGACTGCTAAATTTCATCTAGCTCCAATTATGAAAATGAATGTTAGTAGCTTAATGTAAGAGTGTATATTGCCATTAAAGTGTTAAAGAAAACTCACGGATATAACGAGTTTGGGACATATCTAATCCGCCATGGAACCCACAGCTTCTGGAATGTTCTGTAACAGAATGCTTAGCATGGTAAACTCTGAGGATGTCAACGCCATCATCCAAGCCCAGAGGCACATgctggacCGCTTTGAGAAGACCAATGAGATGCTGATCAACTTCAATGGACTTTCCAACGTGCGGCTGCAGCAGATGAACGAACACTTCCTGCTTCACACGCGCACCCTGGTGGAGATGAAGAAGGACTTGGACAGCATCTTTAGGAGAATCAGGACTTTAAAGGGCAAGATCGCCAAGCAGTACCCAGAGGCCTTCAGAAACGCCCACGAGTCGCCGGTCCTGGAGGACGACGAGTTTGATCCCATCCCGCCCAGTGTCGCCACGATGATCACCGCCACCATGTCGGGGCAGAGCACCGAGTCATGTGACACGAGCCCCGACGTAATTTCCCCGAATGTAAGCCGGTGTTCCGAAGGCCTCTCCCAGGAGCAGGCCGACACGCCCACCTCTGACCAAGGCCTGCCTAGCCCTGAAACGGACATGCTGAGGGACGAGGGCCCGGACTCAGTACCTGCAGAGTAGAGCCTTCATAACCCAGGCCTAGAGCTCTACTCAGTACCTGCAGAGTAGAGCCTCCGTAACCCAGGCCTAGAGCGCTACTCAGTACCTGCAGAGTAGAGCCTCCGTAACCCAGGCCTAGAGCTCTACTCAGTACCTGCAGAGTAGTGCCTTCATAACCCAGGCTTAGAGTTCTACTCAGTACCCATAGATTAGATAGAAGCAGCAGGAGGTCAATGTGATTGATTTGGCTTTGAGTTTTGGCCAGTTATCTGGTTTGTCGGGTTTGAATCAGTAGCTGATTTGATGGTCAGGATTTAAACCAGCACACTGACTGCTGTTCACTTGTAAACGCCAAGATTGTGTCCAAAGATCCCTTTCGTTAGACACGCTTGTCCATCACTCGCCACTAACAATGAAGAAGATACTTGAATGTGTGTTGTGGTTGTGAAGAACTGAATCCTTCATTACTAACCACAGGAGGACTGCACCCAGCTAGTCATTTGTTTGTGTGCACAGGAGTGGCTCTCTTTAATAATGGTTGAGCTTGGAAATATGCACTCATTTAAAGAGGTAGTGAGCTTTGTTGGTCATGGGTAAGCCTATTGGAATCCAGCTAATTGCAATAGTACAGCCTACCAAAATATGTTTCAATTGTTTTAGTGACACACCTCCTGTTATTTACCCTATTAAAACTAGAGCCTGACCGATAAGGTTATTTGGGTCCGATTTTTGGGGGGACAAAACTTACCGATACAGATATCTGCTGTTATACTGTTTTACAGCAGGGAAATGAAAGTGTCATTTTCCACACTGAATTCTCCTAAATTGCCATTCAGAAGAGCAGTTGTCCCAGAAATATGCTGCTAATGTTGATTTCTTACATTGTGACATAATGAGAATGGCCGCAAACATTCAGATCAGCTTGAGAtacccatcccccccccccccccccccccatcctatttattgaatattagTTATCGTGAAATTATCGGCTGATACCGATAAAGCGTTAAAATGCCAATATCAGCAGATCATTTCGGCGACGCAATATATCGGTCAGCTTCTAATTGAAACCTCACCACCACagactttttttcttcttttttttaacatGCAAAATGTGTGAGTTGCTGCATGGAAGAGTTCAGTATTATTGTTTTCCATTGTTTCTCGGATATCCATTTTATTTTGTTGGGATGACTTGAGCTCGAGTACTAGGCTACACTGTAAATTACCCCTCGGTGAAGTGGCTAACTTAAGCATTCTAAGTCTTTATCTGTATCATGATTACGATAAATGTTACGCAACAACTTGAA

Function

GO: NA

KEGG:

id description
K20818 KXD1, BORCS4; KxDL motif-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185895 lncRNA upstream 13732 57536952 ~ 57537221 (+) True LOC110492340
TU185914 lncRNA upstream 16710 57533948 ~ 57534243 (+) True G163049
TU185913 lncRNA upstream 18785 57531949 ~ 57532168 (+) True G163048
TU185912 lncRNA upstream 19778 57530950 ~ 57531175 (+) True G163047
TU185818 lncRNA upstream 204464 57346238 ~ 57346489 (+) True G162955
TU186279 lncRNA downstream 105929 57661952 ~ 57664441 (+) False G163352
TU186278 lncRNA downstream 107707 57663730 ~ 57664441 (+) True G163352
TU186330 lncRNA downstream 233684 57789707 ~ 57792414 (+) True G163362
TU186415 lncRNA downstream 238526 57794549 ~ 57794862 (+) True G163438
TU186451 lncRNA downstream 289100 57845123 ~ 57845437 (+) True G163464
XM_036951377.1 mRNA upstream 4777 57536947 ~ 57546176 (+) False LOC110492340
XM_021566576.2 mRNA upstream 4777 57538854 ~ 57546176 (+) False LOC110492340
XM_036951382.1 mRNA upstream 4777 57540676 ~ 57546176 (+) False LOC110492340
XM_036951202.1 mRNA upstream 23870 57467108 ~ 57527083 (+) True LOC110492265
XM_021566633.2 mRNA upstream 94637 57454374 ~ 57456316 (+) True LOC110492368
XM_021566525.2 mRNA downstream 782 57556805 ~ 57560839 (+) True LOC110492308
XM_021566785.2 mRNA downstream 18225 57574248 ~ 57579830 (+) False LOC110492452
XM_036951521.1 mRNA downstream 18242 57574265 ~ 57579830 (+) False LOC110492452
XM_021566794.2 mRNA downstream 18384 57574407 ~ 57579830 (+) True LOC110492452
XM_021566807.2 mRNA downstream 24131 57580154 ~ 57583524 (+) True LOC110492461
TU184934 other upstream 497311 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 1298355 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 1603708 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 2822093 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 3197565 54352983 ~ 54353388 (+) True G159415
TU186506 other downstream 372127 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 659654 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 2389685 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 2959609 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 3295409 60851432 ~ 60866455 (+) False LOC110493059

Expression Profile