RNA id: TU186227


Basic Information

Item Value
RNA id TU186227
length 2245
lncRNA type sense_over
GC content 0.45
exon number 9
gene id LOC110492469
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57583975 ~ 57601508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggctctgagagagagggaacactGCGCCTGTACTCGGAGAACAACATACTCAAGATCAGAGAGCAGGAGGACAGCAAGAGGATCCAGCACTTGTTAGCCCTGGTGGGGCCAGACATTGGGAAGGTTACCATAGCCCAGAAGAAACTAGAGCCCAGGATTCTGGATCATCGGAAGACCACAAAATCAAGAACTGGATGTTGAAAATATACCTCAAGTCACACATTTTCTATGTAATGCGGTTGTAGAAGGTTTTTAGGTGAAAATCATTCTAGATGGCATTTGGTTAAAATGTTCTCAAACTACCTAGCTGAGTTACACTATTTAGCTTACTTAAGATAAAACGAAGCCCAAGGCGGGGAGCTACTAAAGTCTCATTAAGTAGGATTACAGTGGGCTATTAGCACAAATCAGTTTACAGAAATGTGGAATAATCTGTGTTTGGAGTGCAATATTTCTCTGTGCCGACTTCTGTCTGTGAGCAGAGGGTAACCATAAATCTAGATCAGAGGAAGTGGTGAATGGAGGAAGCTCAGAGCAGTACAGAGGTGCCAACCAGACCTTAGTACTACAGATGGAGGAGCAGACAGGTCTGTCCAAAAAGAAGGTGGAGTCTctactggaggacaggaggatCCACGTGGAGGAGGGACAGGTCCAGCACCAGAGAGACCAGGACCCCATCACTGACAAGACCGGTCTGACAAGATGGCAAAGCGTCTTCAGATGATGACCCAGCGGTACGAGGCCCTGAAGAAGAGGGCAGCCATGGAGGTGGAGGGCTTCAAGAGcgacatcaaacatctccaacaGAAACTCAAAGATGTGGAGAAACAGCTCTTCAAGgtgACCCTGAACGTGGGTCCTGACCATCCTACACGAGGTGCGTCAGACCAACGTTCGGACCAGGAAGGTCCAGGGTGAGCTGAAGGCCAAGCTCTACAGGCTGGAGAAAGACCTCCActacagctgagatacagcacaGACTGGCCCACTGGAGACCTGGGTACCATTCAGTGCAGTGGAACAATGATCTTTCAGCCTCAGAGCAGCATGACTGGTTCTGATTCTGGATAGGTGTGTAACGTtcgtcgtaggtggaagaagaggaggaccaatgcgcagcgtgTGACAACCCTATAGCAGACATTTATGGTGCCAACCTCTACAACCACTACTTACAGGCCTGACGCCACTGCAGGGTTCAGATGCAGCTCAAGCGGATCGGTGGGGAGCCCCAGAGCCTGGAGGACAACCACAAAATTATCCGTGACAAAATGGAATGGGTGTCAGGGGTGTACTAGGGGCGAGGACAATACTGTCCTGTCAAGTCTATTCCTGGCCCATACACTGTTCACTTCACTGCCTAGTTAGTTAACAGCCCCTCATGGTCTGGGTCTCAAAGGTTGCctttacacaggcagcctaattctgatcttttgcccaataATTGCTCTTTTGACCAGTCAGATCAGATGTTTTGCCAACAATTGGGTAAAAGAtcagaattgtgctgcctgtgtaaaccTAGCCTAACAGCTACTCTTTGGTTAGGACAGAGTCTGAGAGTCCACATAGACctctctgtgaccaacagatgtctAAAATACAAGTTAACATATGAAGGAGGCTTCCTCCTTAACCCCCCCACTCTTGTATTGTCTTATACAAGTCTAGAATGTCCGTGCACATTTACCATACGGTTCTGCCATTGAGATTTCCGTAACTTTTCAATTTCTGTTGCGTGTCCTGTTCTAAAGAGTGTAATTATGTCTGTTATGGTAATCATGACTATGTTTTTGGCGGCTAAAATTATTCTTAGTTTAATTGAAACAGCCTTAGGGGTGGTTTGATAGGTCAGTGACCTCCAGGATTATTACAGTATAAGAGTCATTTCTTTATGCAAGTGACTAATTTAAGTCAAGGAATGTTCATTGATGGTCTCCACAACTGATGCAAGGCAAGTTGTTCAATTTACCGTTAACTAAACTAGTCCTACATATCCGCTTGTGTTCAATTAAGGGTTGGAGCATCTTAACAGAGCCAATAGTATGTGAAGGCATGCTATCGGGGGATGTAAGTATTTTATCATGTTTTCTGaattatgattattatttttaTGGAATTTGTTATTGAATGTTTTATGCGGGGATGTCAGCATTTGTACAATTTGGCCCATGGTTTTAAGGGAAAGAAGTGTGAGACTGTGGAATTGTCAATGCAACAGTATATTTGACAAACTGGagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186231 lncRNA downstream 2189 57580525 ~ 57581786 (-) True G163307
TU186163 lncRNA downstream 28341 57554439 ~ 57555634 (-) True G163251
TU186198 lncRNA downstream 34556 57549199 ~ 57549419 (-) True G163286
TU186196 lncRNA downstream 37826 57545869 ~ 57546149 (-) True G163284
TU186189 lncRNA downstream 51278 57532281 ~ 57532697 (-) True G163277
TU186251 lncRNA upstream 19146 57619364 ~ 57623508 (-) True G163325
TU186255 lncRNA upstream 29028 57629246 ~ 57629813 (-) True G163329
TU186269 lncRNA upstream 53291 57653509 ~ 57654382 (-) True G163343
TU186285 lncRNA upstream 65494 57665712 ~ 57665952 (-) True G163358
TU186826 lncRNA upstream 70873 57671091 ~ 57672882 (-) True G163782
XM_021566455.2 mRNA downstream 243665 57332151 ~ 57340310 (-) False c2h11orf16
XM_036951336.1 mRNA downstream 273124 57302760 ~ 57310851 (-) True ric3b
XM_036990288.1 mRNA downstream 333834 57245938 ~ 57250141 (-) False LOC100135818
NM_001124214.1 mRNA downstream 333871 57246461 ~ 57250104 (-) False LOC100135818
XM_036990272.1 mRNA downstream 334521 57245938 ~ 57249454 (-) False LOC100135818
XM_036951689.1 mRNA upstream 197561 57797779 ~ 57815303 (-) False LOC110492538
XM_021566945.2 mRNA upstream 197561 57797779 ~ 57815595 (-) False LOC110492538
XM_036951679.1 mRNA upstream 197561 57797779 ~ 57837766 (-) False LOC110492538
XM_021566953.2 mRNA upstream 197561 57797779 ~ 57842492 (-) False LOC110492538
XM_036951663.1 mRNA upstream 197561 57797779 ~ 57875596 (-) False LOC110492538
TU186027 other downstream 250073 57333078 ~ 57333902 (-) True c2h11orf16
TU185975 other downstream 333868 57244381 ~ 57250107 (-) False LOC100135818
TU185976 other downstream 333868 57244835 ~ 57250107 (-) True LOC100135818
TU185753 other downstream 342603 57240279 ~ 57241372 (-) True G162897
TU185596 other downstream 466825 57114567 ~ 57117150 (-) True G162745
TU186917 other upstream 176251 57776469 ~ 57789383 (-) True G163839
TU187105 other upstream 511123 58111341 ~ 58118221 (-) True G164003
TU187106 other upstream 529191 58129409 ~ 58131373 (-) True LOC110492612
TU187140 other upstream 573441 58173659 ~ 58175088 (-) True G164037
TU187215 other upstream 762368 58362586 ~ 58363594 (-) True LOC110492691

Expression Profile