RNA id: XM_036951608.1


Basic Information

Item Value
RNA id XM_036951608.1
length 5329
RNA type mRNA
GC content 0.55
exon number 40
gene id LOC110492500
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57667227 ~ 57789395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGTGTACCGTCTTTGCCCAGACGGTCACGGCATCCATCAATCGTTTCTGTCAGTTTAACCAAGTTCCCTTTGTTTGCGGACGTGATGGACTCTAGCTGCGTTTAAAACCAGAACAGATGTGACTAATTGTTTGTTTCTTTCcgagtgtttttatttttttagttgGTTGGATGCTCAGCCAAGACAAGATGAACAAGAGAGAGGATGCATAGTCCCTGAGATTTTTTTGTGGTCCACTTGTAAAATAACCAACCTGTTATCTGTTTATGTTGGCTTTTTGTTGCACTCGAGGACTGGAGTCCACAACCGTCGCTCTTTGAAAGTAATGATCTCACGATACAAACCGAGCCCCGGTTCCAACATGTCCTTGGCGTTCTGTGGGAACGAGAACAACTCGTTGGCGTACAACGTGGACAGCGGCGTTCTCAACAACGGCTGCTTCCTGGACGCGCTCAACGTGGTGCCGCACATCTTCCTGCTCTTCATCACCTTCCCCATCCTCTTCATCGGCTGGGGCAGCCAGAGCTCCAAGGTGCACATCCACCACAGCACCTGGCTGCACTTCCCTGGTCACAACCTGCGCTGGCTCCTCAccttcgtcctcctcttcgtcctgGTCTGTGAGATCGCAGAGGGCGTCGTCTCCGATGGGTTCACCCAGTCCCTCCACCTGCACCTGTACATGCCTGCAGGCCTGGCCTTCATGGCGGGGATCACCTCCATCATCTACTACCACAACATCGAGACCTCCAACTTCCCCAAGCTACTGCTAGCCCTACTGTTCTACTGGGTCTTGGCCTTTCTGATGAAAACCATCAAGTTTGCCAAGTACACGGAGCACGGCATCGGCCTGAGACAGCTCCGCTACggcatcacaggactcctggcCCTGCTCTACGGACTACTACTGGCTGTGGAAATCAACGTCATACTGGGCAGGCGCTACCTGTGTTTCACTGAGGCTACGGAGGTGAAACCCCCAGAGGACCTGCAGGATCTGGGGGTGAGGTTCCTGCAGCCCTTTGTCAACCTGCTGTCCAAGGCCACTTACTGGTGGATGAACACCTTCATCACAGCAGCCCACCGCCGCCCCATCGACCTCAAGGTCATCGGCAAGCTGCCCATCGCCATGCGAGCCCTCACCAACTATCTGAAGCTCCGCAAGGCTTTCGAGAGTCAGAGGAGGCCTCTGGGCTCCATGCCGCAGGACCCTAAGTGGATCTGGAGGGCCCTATGCCAGGCGTTTGGACGTCCCCTCATCATCAGCATCACCTTTCGCTTCCTGGCTGACCTGCTGGGCTTCGCTgggcctctctgtatctctggcATCGTCCACCACATCAGCAAGGAGAATCGCACCATACAGCCCCCGATAAAGCTGCTGGGGGTCTACTTTATCTCCTCTCAAGAGTTCTTGGCGAATGCATACGTGCTGGCCGTGCTGCTGTTCTTTGCCCTGATCCTGCAGAGAACCTTCCTCCAGGCCTCGTATTATGTGGCCATCGAGACGGGCATCAACTTACGAGGGGCtatacagACTAAGATCTACAACAAGATCATGCGGCTGTGCACCTCCAACATGTCCATGGGAGAACTGACAGTGGGACAGATCTGCAACCTGGTAGCCATAGATACCAACCAGCTCATGTGGTTCTTCTTCCTCTGTCCCAACCTGTGGGCCATGCCAGTCCAGATCATTGTGGGGGTTATTCTGCTCTACTACCTCCTGGGGATCAGTGCTTTGATTGGGGCCACAGTCATTGCTGTACTGGCCCCTGTCCAGTACTTTGTGGCCACCAAGCTGTCCCAAGCACAGAAGAGCACCCTGGAGTACTCCAGTGAGCGGTTAAAGAAGACTAATGAGCTGCTGCGAGGCATCAAGCTGCTGAAACTGTACGCCTGGGAACACATCTTCTGTCACAGTGTGGAGGAGACCAGGGGCAAGGAGCTCACCAGCCTACAGGCCTTCGCCCTGTACACATCCATATCTATATTCATGAATGCAGCCATCCCTATCGCTGCTGTCCTGACTACGTTTGTGGTCCATGTGCACATCTCTGAGGAGGCTGACCTGTCACCTGCTGTGGCCTTCGCATCCTTATCCCTGTTTCACATCCTGGTCActcctctcttcctgctctccAGCGTGGTGCGATCCACAGTCAAGGCCCTGGTCAGTGCCCAGAAGCTGAGTGAGTTCTTCAGTAGTGATGAGATTGGAGACGAGCAGGAGCCCAACGCTACCATGCCCGCTGGCCCCAGCAACCACAACAGCAAGTACCAGGCTGTGTTGTCCTTTAAAAAGCCTAAGCCATGGCCTGTTCCCTCCCTGCGCCCCTCCCAGCCCCTGAAGGTGGTGAACAGGAAGAGGCCCCCCAGGGAAGACTGCTGGAACAACTACAGCCAGAAGGGAGGCGACCCGCCCCCCCAGGAGAGGGACCAAGAGCTCTGCTTCAGGATAACCAGCGGATATTTCACCTGGACAGATGGACCTCCCACCCTGTCTAACGTAGACATCAAGGTTCCGTTCGgtCAGCTGACTATGATCGTGGGCCAGGTGGGTTGTGGGAAGTCGTCCCTGCTGCTGGCAGCtctgggagagatgcagagagtcTCTGGGACTGTCACCTGGAACAGTTTTCCCAACCTGGACTCTGAAGGCGATGAGAGGTATGTGTCTGAAGGAGACGAGAGCCCCACATCAGACAAGGATGCAGCTGGTGATGGGGATATCCAGAAGAGAGGCTCTGTGGCTTATGCTTCCCAGAAGCCCTGGCTGCTCAACGCGACGCTGGTGGAGAACATCACCTTTGAGATGCCCATGATCAAACCCAGGTACAAGGCTGTCATCGAGGCGTGTTCCCTGCAGCCGGATATCGACATCCTGCCACAGGGAGACCAGACGGAGATCGGAGAGAGGggtATAGTTCTATCTGGAGGGCAGCGCCAGCGTATAGGTGTGGCCAGAGCCCTGTACCAACAGGCCAACGTGGTCTTCCTGGATGACCCGTTCTCAGCGTTGGACATTCACCTGAGTGACCACCTGATGCAGGAGGGCATCCTCAAACTgctgagagaagagaagaggactgTGGTGCTGGTCACTCACAAGCTACAGTACCTACCCCACGCTGACTGGATCGTAGCGATGAAGAACGGGACCACTCAAACCGAGGGGACTCTGAAAGACATCCAGAACTCTGAACCGGAGCTATTTGAGCAGTGGAAGACCCTGATGCACCGGCAGGACGGAGAGTTTGAGAAGGAGACAGTGCCTGAGAGTATGACGGTGTTGGAGCGCAAGAACCTGCGGAGAGCCATGTACTCCAAAGAGGCCGCCAAGACTGAGGAGGAGGACAAAGAGTCTGTGGACAGTGACGAGGATGACAATCTGTCCCAGGCCATGCGTCACCGCACCACCATCCCCTGGCACTCCTGTGGGGTCTACCTGTCCTCTGCAgggctcctcctgctgctgctgctcctcctatCACAGCTCTTTAAACACTCCCTCATGGTTGCCATCGACTACTGGCTGGCCCACTGGACCTCCCGCGTCATCAATGCCAAGATGGAAGCCACCGGGAGGAACTGCACCGTCGTTCAGGAGTGTGGGTTCAGCCACTCGTGGTACCTGTCGGTGTTCAGTGTGTTGTGCTGTCTGGGCATCGTTCTGTGTCTGGTCACCTCTGTGGCCGTTGAGTGGACAGGCCTGAGAGTGGCCAAAGAACTACACCACAACCTGCTCAGCAAGATCATACTGGCCCCTATGAgGCTGTTTGAGACCACTCCCCTGGGCAGCATCCTCAACAGGTTCTCCTCTGACACCAACACCATAGACCAGCACATCCCTGCCACCCTGGAGTGTCTGAGTCGCTCCACCCTGCTGTGTGTGTCGGCCCTGGGGGTCATCTCCTACGTGACCCCTGTGTTCCTCATTGCTCTGGTGCCTCTGGCCATCGCCTGCTACTTCATACAGAAGTACTTCCGGGTCGCTTCTAGGGACCTCCAGCAGTTGGAGGATAGTACCCAGCTCCCTCTCCTGTCCCACTTCTCAGAGACAGTGGAGGGCCTCACCACCATCCGGGCCTTCAAGTATGAGCCCAAGTTCAGACAGAGGTTACTGGAGTTCACTGATGCCAACAACATCGCCTCCCTCTTTCTCACAGCAGCCAATCGCTGGCTAGAGGTCCGCATGGAGTACATAGGTGCCTGTGTGGTTCTGATAGCAGCTGTGGCCTCCATCTCTAACTCTCTGTATAACCACCTCTCCACTGGCCTGGTAGGACTAGGTCTCACCTATGCACTCATGGTGTCCAACTACCTGAACTGGATGGTTCGTAACCTGGCAGACATGGAGGTTCAGCTGGGTTCAGTCAAGAGAATCAATGGTCTGCTGCAGACTGAGCCTGAGAACTATGAAGGACTGCTCActgcATCTCAGGTGCCGGATGGCTGGCCACAGCAGGGGGAGATTCAGATTGAGAACCTGAGTGTGCGTTACGACACCACCCTGAAACCTGTCCTCAAACAAGTCAACGCACACATCAGCCCTGGGCAGAAGGTGGGGATCTGTGGCAGGACAGGAAGTGGGAAGTCTTCCTTCTCCCTGGCCTTCTTTCGCATGGTCGACATGTTCGAGGGGCGTATCATCATAGATGACATTGACATCGCCAAGCTGCCTCTGCAGACCCTGAGGTCTCGATTCTCCATCATCCTCCAGGACCCCATCTTATTCAGCGGAACCATCCGGTTTAACCTGGACCCAGAGATGAAGGCTACTGATGACATGCTGTGGGAGGCTCTGGACATCGCTCAGCTAAAACCTGTAGTCAAGACCCTACCAGGAGGACTGGACGCCAcagtgacagagggaggggagaactTCAGCCAGGGCCAGAGACAGCTCTTCTGTCTGGCCAGAGCCTTCGTCAGGAAGTCTAGCATCCTCATCATGGACGAAGCCACAGCCTCTATAGACATGGCCACgGAAAGCATCTTACAGAAGGTGGTGATGACTGCCTTCGCTGATAGAACAGTGGTTACTATAGCAcATCGTGTCCACACCATCCTGAAAGCAGACCTGGTGATCGTGATGAAGCGAGGGCTCATTCTAGAATACGACAGACCCCAGGCGCTGCTGGAGAAAGAGGACAGTGTCTTCGCCTCCTTCGTCAAGGCGGACAAGTGAccgaggagaaagaggggaggacaTTCCAAAGTGCAATTGTACCATGGGCTATATATTATAATTTTATTTTCTAATTATGTATGATATTCGTAACATTAAATATGAATTatttgttaataaaaaaaaaacataaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186279 lncRNA upstream 2786 57661952 ~ 57664441 (+) False G163352
TU186278 lncRNA upstream 2786 57663730 ~ 57664441 (+) True G163352
TU185895 lncRNA upstream 130006 57536952 ~ 57537221 (+) True LOC110492340
TU185914 lncRNA upstream 132984 57533948 ~ 57534243 (+) True G163049
TU185913 lncRNA upstream 135059 57531949 ~ 57532168 (+) True G163048
TU186330 lncRNA downstream 312 57789707 ~ 57792414 (+) True G163362
TU186415 lncRNA downstream 5154 57794549 ~ 57794862 (+) True G163438
TU186451 lncRNA downstream 55728 57845123 ~ 57845437 (+) True G163464
TU186461 lncRNA downstream 65889 57855284 ~ 58335346 (+) True G163473
TU186488 lncRNA downstream 114442 57903837 ~ 57973779 (+) True G163499
XM_036951561.1 mRNA upstream 11631 57606860 ~ 57655596 (+) False ush1c
XM_036951570.1 mRNA upstream 11631 57606860 ~ 57655596 (+) True ush1c
XM_021566807.2 mRNA upstream 83703 57580154 ~ 57583524 (+) True LOC110492461
XM_036951521.1 mRNA upstream 87397 57574265 ~ 57579830 (+) False LOC110492452
XM_021566934.2 mRNA downstream 5868 57795263 ~ 57797634 (+) True LOC110492531
XR_005037372.1 mRNA downstream 250943 58040338 ~ 58106864 (+) False LOC110492579
XM_021566992.2 mRNA downstream 250943 58040338 ~ 58109443 (+) False LOC110492579
XM_021567000.2 mRNA downstream 250943 58040338 ~ 58109443 (+) False LOC110492579
XM_021567008.2 mRNA downstream 250943 58040338 ~ 58109443 (+) False LOC110492579
TU184934 other upstream 613585 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 1414629 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 1719982 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 2938367 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 3313839 54352983 ~ 54353388 (+) True G159415
TU186506 other downstream 138755 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 426282 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 2156313 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 2726237 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 3062037 60851432 ~ 60866455 (+) False LOC110493059

Expression Profile