RNA id: XM_021566934.2


Basic Information

Item Value
RNA id XM_021566934.2
length 2372
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC110492531
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57795263 ~ 57797634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTACGAGCAAACCTGCCTGCCTCCTCCAAACGATGGACCGGGGGTAGTTTTATCACCACTGCTGTTGCGGGTTATCTACCATTTTATCCGTAGGAATGAACATTAATCGCGGACAAGCGCGCCAGACCAGTGCGTCAATTGCGACGGTTGGCTACTATCGAGTTGCTGTTGCGTGACTGACAGCGGCAGCTGAATGCAGAATCTTCTCATGGGACCTGGGCGGCTATGGTGGTGCGCCTGCCTGATCTGGAACGGGGCAATGTGAAGAGCTCACATACTTTTAGAAACTAGATGACAGAGCAACACTCTTCCTCTGGCAGCTGCGGTCATTCGGGATGAGAACTGTCACGAGCGGTCGCCTTCTGTTAGGGGACGCACATGAGAAGAGGAAATTAGCCTATAGATTTTAATCAAGAGGAGGTAGCTAATCTGCTTAATCATTGGTCCCGCGGTGAATAGTAGGCTATGGGATCACTATGTTGTCCCGAAAAGGACTGGTCCCTGACGACTACTTGCTGACCCGCTTGGCTGAGGATGTCCAGCAGCCTAAATTCAAGGGGAAAGCGCGGAAGGCTCGGTTCGTTGCCAAAAATGGAACTTGTAATGTGGCCCACACGAACATTCGCGAACAAGGACGGTTCCTACAGGATGTTTTCACCACTTTAGTGGATCTAAAATGGCTTCACACACTTATAATTTTCACCATGTCGTTTCTATGCAGCTGGCTGCTGTTTGCGATGGCGTGGTGGCTCATTGCCTTTGCACACGGCGACCTGGATCAAAAAGGTGACGACTTTGTCCCTTGCGTAACGGACATCCACTCCTTCTCCTCCGCTTTCCTTTTCTCCATAGAGGTGCAGGTGACCATCGGGTTCGGTGGACGCATGGTCACAGAGGAATGTTTGTCCGCCATAGTGGTCCTCATCATTCAGAACATCGTGGGCTTGCTGATTAACGCCATCATgctggggtgtatatttatgaAGACGGCCCAGGCGAACCGGCGCGCCGAGACGCTGATCTTCAGCAAGCACGCTGTCATTTCCATCCGAAATAACAGGCTCTGCTTTATGATCCGTTTAGGGGACCTGAGGAAGAGCATGATAATCAGCGCCACCGTGCGGATGCAGGTGGTAAGGCGTAGCACCACTCCGGAGGGCGAGGTGGTCCCCCTGGACCAGATAGACATTCACATGGACAACCCCGTGGGGACCAACGGTATTTTCCTGGTAGCCCCTCTTATCATATGTCACATTATCAACAAAGACAGCCCGCTCTATGAGCTGTCACCAGCGGACTTACAAAATAATGACATCGAGGTGATAGTGGTGCTGGAGGGGGTGGTGGAGACCACGGGGATAACCACCCAGGCCCGGACATCCTATCTGTCCGAGGAGATACTGTGGGGGCAGCGCTTTGTGCCCACTATAACCGAGGAAGAGGGCACGTACGCGGTAGACTACTCCAAATTCGGTAACGCGATTAGAGTACCGACACCCAGCTGCAGTGCCAAGAAACTGGATGAGGACGGAGGCATCGCCAGGTTTAAGCTGCACGAGCACTCCACCCCGCGGCCGTCGGTGAGAAGGCGGCAACTCTCACTGCGCATCAAGCGTCAAAGCACCATCAGCCCACTAGCCTAAATATACCACTTTAATAAAAGGAGTGGATAGTGCCAATGCATTTTGTATATGAAATTGAGATTTTTATTACCAATATCATTTTCATGGATATTTTTGTAATGTTACAGAAATGCTGTTTATGTCCAATGATGTTCTGATTCTGGGCACTGGGACCCACAAGGTGTGCATGCATGTTCTAGCCCAGCACACATCTTCAACCAAGGACTGACTGACTATATGTTTAAATGAATCCAGTGTTGGGCTAGAACAAAACTCTGCACACCCTGTGGGTATTAAGTCAGGACCAGGATTTAGTATGGTAGCCTAATAGCCATGTGCCCCTACATACTGCAATGTTAAATGTACTATATTACCTGAAAGCGTTAGGTGATTTTAGGGGCCTGAACATCCTGCCGTtctatcaatcccagaacatgcACGTATCAAATACCTTATACTCAGGGTGCTCAATGAAAACATATGAATGATGGAACGCAGTTGGATAGATGTGTAACATACAAAGCTATGCAATTATCCAGTTTGAAGGCACaggccagcgtgtgtgtgtgtagtagactGGTGCCCAACACTCCTCCCGGACAACTGGGCTCCTTGCAGGCTTTTCATCTGACCCTGCATGAAAACAATTGACCAGCGCTGATCTACATAATGATGCTCTTGTATGGTAAAAACATATTGTCTTATGCAAAGCTTGACATGGAAATAAAGGAATGCCTGTtgacatgta

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186415 lncRNA upstream 401 57794549 ~ 57794862 (+) True G163438
TU186330 lncRNA upstream 2849 57789707 ~ 57792414 (+) True G163362
TU186279 lncRNA upstream 130822 57661952 ~ 57664441 (+) False G163352
TU186278 lncRNA upstream 130822 57663730 ~ 57664441 (+) True G163352
TU185895 lncRNA upstream 258042 57536952 ~ 57537221 (+) True LOC110492340
TU186451 lncRNA downstream 47489 57845123 ~ 57845437 (+) True G163464
TU186461 lncRNA downstream 57650 57855284 ~ 58335346 (+) True G163473
TU186488 lncRNA downstream 106203 57903837 ~ 57973779 (+) True G163499
TU186554 lncRNA downstream 197670 57995304 ~ 57999495 (+) False G163544
TU186557 lncRNA downstream 197715 57995349 ~ 57999495 (+) False G163544
XM_036951582.1 mRNA upstream 5868 57667227 ~ 57789395 (+) False LOC110492500
XM_036951608.1 mRNA upstream 5868 57667227 ~ 57789395 (+) False LOC110492500
XM_021566881.2 mRNA upstream 5868 57667228 ~ 57789395 (+) False LOC110492500
XM_036951597.1 mRNA upstream 5868 57667228 ~ 57789395 (+) False LOC110492500
XM_036951627.1 mRNA upstream 5868 57667228 ~ 57789395 (+) False LOC110492500
XR_005037372.1 mRNA downstream 242704 58040338 ~ 58106864 (+) False LOC110492579
XM_021566992.2 mRNA downstream 242704 58040338 ~ 58109443 (+) False LOC110492579
XM_021567000.2 mRNA downstream 242704 58040338 ~ 58109443 (+) False LOC110492579
XM_021567008.2 mRNA downstream 242704 58040338 ~ 58109443 (+) False LOC110492579
XM_021567023.2 mRNA downstream 242704 58040338 ~ 58109443 (+) True LOC110492579
TU184934 other upstream 741621 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 1542665 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 1848018 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 3066403 54728296 ~ 54728860 (+) True G159889
TU181970 other upstream 3441875 54352983 ~ 54353388 (+) True G159415
TU186506 other downstream 130516 57928150 ~ 57931991 (+) True G163513
TU186698 other downstream 418043 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 2148074 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 2717998 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 3053798 60851432 ~ 60866455 (+) False LOC110493059

Expression Profile