RNA id: XR_005037372.1


Basic Information

Item Value
RNA id XR_005037372.1
length 6132
RNA type mRNA
GC content 0.51
exon number 31
gene id LOC110492579
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 58040338 ~ 58109443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACGCCAGAGGCCACCGCTCCACCCCGCAAAAGGGGACACAGAAAAGTAACTTCTTCCTATAAACACCACCACTCATTTGGCGACCCGAGCCAACGCAACAGTTTACAAGACCACACCAGCGACAAGGCTAAACTGTACGCGTCTATAAAATCAAAAGTCGAGGAGATAGTTTTCGAGAAAAAAAAGTAACGTTTGGAATTGCAAGCGCACACCAGCAAGAAACGCTTGTGAAGTTTCTCCCAGATGCTTGGAGCCATGAGCCGAATGTTCTGCTTCGGTGTTCTTCTCAGGACGTCTGTCGTCCTATATCTGTTTCTCAAAGGCTCACAAGCTCAATGCGCTCTCTGTACGAATTTCAAAGCCAGCACAACAGCAACAGAGATTAATATTCAGGTACACGCCAACTGCACCGTGAGCACTGGCAGTACTTCTGTGTTCTCCATCTCAACTATGGCCACCCTGTCTGGACTGGCTCCTGGGTCCACCCACCGTGTGCATGTCCTGTGTAACGATATCCAACAAGTCGACTGCTGCAATAACTTCACAACAAAGCCTGAAACCATCACAATCCTCACTGTCACCAAAATCACAACATCATCGGTGTCTCTGAGCTGGACTAAACCAGAGGGTAGCTCCTTCTATAAAGTAGAGTGGACTGATGGCAGTATCAATGACAGTCAGAATACCACAGGAACTTCTGTAAATGTTACTGCTCTCACTGCTGGAGCGCAGTACCTCTTCACAGTCACTGCAGTGGCTGGAGATAACAAAAGTGAAGGACGAAACAAAACCGTTTTGAAATATACAAAGCCTGCAATCGTCAGGAAACTTACTGTGTCTGAAATCAGAACATCCTCTGTGTCTCTGAGCTGGACTGAACCAGAGGGAAACAGctccttctatataatagtgtggACTGATGGCAGTGACATTGGCAGTAAGAATACCACAAGAACCTCCACTACCATCACTGGGCTGCCTGCTGGAGTGGGGTACACATTCAGAGTCACTGCAGTGGCTGGAGATAATACAACTGTAGGAGAAGGCAGTGAAACAACCACTTTTACAAAGCCCGCAATCATCAGGAACCCTACTGTCTCTGAAATCACAACATCATCTATGTCTCTGAGCTGGACTGAACCAGAGGGAAATAGCTCCTTCTATAGAGTAGAGTGGACTGATGGCAGTAAAACTATGAATAGAACTACACATGAGACAGCCTTCAACATCAATGAACTGACTGCTGGAGTTTGGTACACATTCAGAGTCACTGCAGTAGCTGGAGATAACATGACGGAAGGAGTTGCTTATGTAACAAATCAAGCCACAAAACCTGCCGTCATCGCAACCCCTACTGTCATTCAGAccaccacgtctctctctctgagctggacCAAGCCTACAGGAGAGGCAACAGGCTACAGGGTGAAGTTTCATAACGGAGGAACAGTGAAGGACCAACCTACATCCACCACCTCTGCCATCATAGTGAGCCTGACCCAAGGGACCCAGTACACACTCCAGGTCTTTGCCATCGCCCAGGACACGATAACAGAAGGCGACCCTCGCACCGTATACGTATACACAAAGCCCGGAGTTGTCGGCAACCTCAATGTGATTGGAACCACAACATCGTCTGTGTATCTGAGCTGGACTCAACCACAGGGAAACAGTTCATTCTATAGAGTAGAGGGGACTGGTGTCAGTATGAATACCACAGAAACCTCCACTACCATCTCTGGGCTGACTGCTGGAGTGCAGTACAACTTCACAGTCACTACAGTGGCTGGAGATAAAACAACTGTAGGAGAAGGCAATACAACAGCCACTTTCACAAACCCTAAACAACCTGTGAACATTGTGGCTACTGGACCAGGGACCAGTCAGCTGAATGTGACCTGGACCTTGCCTGGAGGGAGGGTGGACCAATACAATGTGAACATCTCTAATGCTGCTTTAAGCTATGCGTCCAGCCAAACCACACAGACCACAATGGCCAGCTTCACTGGGCTACAGTCAGGGAGGGTCTATGAGGTCACAGTGACTGCTGTAGCTGGACACTTCAGGAACCAGTCTGCGACGGGCCAGTTAGCCACTGTACCCAACCCACCTGGACCCCTCAACATCACAGAGAGGACAACCAGCTCCCTCGCTGTCCAATGGAAAACCCCTGGTCTAATGACTGGTGTTCCGGGCATCTCCTATAACATTAGCTACTATTCTACTGGGACTGGAGCAAGCAGCCAGTCTACCGCTAGTCTCAGTTATAACCTGCTCTCTTTGTCCTCTGGAACGTTCTACACCATCACAGTGATAACCGTGGGACCACAGGATCTGGGAAGCGCCCCTGTTAATACATCTGGATACACATTGCCAAAACCAGTGGTGAGCCTCATAGCGAGCCCGTTGTCCACCTCCTCAGTGAAGCTACAGTGGACTGACCCTGTGGGTGTTAAGTCCTACTACTCCTACAGAGTCCAGTACAGCAACGCTACAGGCCCTGTCGGAGAGAAAACAGTCAATACAAGCTTCGCGGACGTCCCTGGCCTAGAACCTGGGACTGGCTACACCTTCACTGTtacaacagtagcagcagcgggAAGCGACGGAATTCCAGAACACACGTTCAGCTACACACAGCCCAAGGCGGTCAGTAACCTCGTGGTCAAGGATCTGAACACAACCGCTATCAAGCTTTCCTGGTCCCGACAGGACGACTACCAACCCACCTACTCCTATCTGGTGACCGTCTCCAAGAAGGGTTCTATGGTTGCGAATGTGTCAACCACGGTCGAGAGCTACACCTTCACCCATCTCCAGCCTGGGGACAGTTACACCTTCTCTGTGGTCACGGTCGTCCAGGGGGTTAAGTCTGACTCAGTAGAGACGTCTAGCTACACAAAACCTGGGGTGGTGACAAACATCGCCACAACAGGAACAACCACCACAATGAATGTGACCTGGGATGCCCCTGTGGGACAGGTGGACTCCTACACCGTCACAATCCACAACGACAACGTGATGGAAAACAGCCACACCGTCTCCAATGACTCTCTAGAATTAGTGTTCCAAAACCTGAAACCAGGGAAAGTCTATGTTGTCAGAGTGGTCACCAACAGTGGACCGCTCACTGAGGCATCACTGAATGTTACAAATGCAACGTATCCCAACCCTCCCGGAACCCAGAAGGTGGAGGCCCAGACCACTGGTTCCATCAACATCAGCTGGGCCCGGCCCCTGGACATGGACCTGGGTCAGTACCGGTTCTCTGTGTTCTACCTGGGCCAGCATAACCTGACGGAACACAACTGGATCCTCCTGGAGAACCTCCAGTCTGGAACACTCTACAACATCACTGTGGTAACCGTAGGGCCGTTGGACTACCAGAGCACAGCGGTGACGACAGCCAACTATACCAGGCCCCGCTCTGTGAGTAGGCTGACAGAGGCAGGAATCACCCCTACCGATGTGACTCTAGTCTGGGATCAGCCGGAGAACAAAGCTGGCTACTCCTTCAAGGTGGAGGTAACCTACCCCAACGGGTCCCTTTTAATCGGCGTCACTGTCAACAACACCAAAAGAATTGTCACCGGACTACAGTCGGGGAGCAACTACACCTTTACCGTGACAACGCTCACAGAGGACGGCACCATGGCAACCCCTGTGAAAGTGTCCTATTACACAAGACCATATCCCATTAGTGGGTTGTTGGCGCCTACAGTAAACACAACTGGTGTACGTCTGACCTGGACCAAGCCACCTCAATACCAGAGTGGTTACACATACCGCATCCAGACCGAGGGGTGCGTGTCTACTCCCACAAACCACACAGTGACAGGAGAGGAGGCTGTCATTCCAGAGCTCACACCAGGAACCAATTGCACCTTCCGTGTTTCCGTCAAGGCACAGGGCGGTATAGAGGGAGGCACCGTCTCAATCTTTCAGTACACAGAGCCTGAGTCTGTCCAGCCATCCATCTCCAACAACGGTAGCACCAATACCATGGTGGTGAGCTGGGCGGCACCCCCAGGGAATGTGGGGCAGTATGTGGTCCATCTGAACAGCACTGACCAAGTCTTTACCCCCGTATGGCTGAACTCCAACCAGCAGACACACACCTTCATTTACCTGTCTGCTGGGAGAGAGTACACAGCCGTGGTGACCACTATCAGTGGGCCCTTCAATGAAACATCAGGACCTGTAACTACAGCAACTCAACCCAACCCGCCTGGGCCCATCGGGATCTTGGAGAAGACGACTAGTTCCATCACTGTGGAGTGGGGCGAAGCTCCTCTGATGGCCAACACCACCTTCAGTTACCTGGTGAAGTACCTGTCAACGCAGCGAGACAGCAAGACGGTCACGACTACAAACACAAGTCAAACACTGCTCAGCCTGTCCTCTGGAACACCCTACAATGTGTCTGTGGTTTCAGTGGGAGTTCTAGGCTTCCACAGTGAGGAGGTCTGGAGCAGTTCGGTCACAACCAGACCAGAGAGTGTCCAGTCATTGCGTGCAGTGACAGCCGAGGTGAACCTAACATTGACCTGGTCAACGCCTGTAGGTCACAAGCCAGGCTACAGCTACAGAGTGACCTGGACAAACTCCACTGGGTTAATCATCAGTAATAGAACCACGGCCGTGGAAAACCTGCCCGTCAATGGATTGGTCCCCGGTAGTCCGTATAACTTCACCGTAACGACACAGACAGATGACGGCACAGAGGGAGCTCCAGTCTCAACCTCCAGCTGCACCAACGCCAGCCCTGTGTCCAACTTGAAGTGTGCCTCTCCTAATGACCCCAACGCCAAGCTGAGTCTGTCCTGGACCAAACCCAAAGGACTGCACCAGGGCTTTCAGATCACTGCTAAGGAAACCATCCAACTCCCTCAGGGCCAGGTACACAATAAGACAATTGGTGACTGTAACCCAGCCTGTGGTCACACAGTCCCTGACCTGAAGCACTATACAGACTACACCCTGACCGTGACCACTCTGGGCTGTGGGAAAACCAGCACCGTCCAAAGCCTCACCTGCAAGACTGGCATTACTGTCCCTCCTATCCCAGCCGACTTCGAGTCCCTAGTCAGTGTCACAGCGAAGGATCACAACTCCTTCTCTGTGCAGCTGACCCCCAGCCTCCTGGACAGCACCAATGGACCAATCAAACACTACGGCGTGTTGGTGACCTCAGACATCAACAATGTAGATCAGTCTAACTCATCGCAGTACTTAGTGAAGACTTACCAGGACTGGGAAGCAGGCTCTACTACTGCATACCTGGCTACGGTCAAAGACAACACTAACAACAGCCGGAGGAGGAAACGTGCAGGGAACATTGACATTTACATAGGGGACAAAACCTCATGGAAGGGCTATACCAATGGCCAACTCAAGGCCAAACGAGAGTACAGTTATGCCATTGTTTTATTCACTGAAATGGTGGTAGAGCAGAATGGCCTTCTGAACGTCGGTTCGTCGCTCGTCATGATAACGCTGTTTAACTCAAATTCATTGTACCTCCCTCAGGACCCAGGGGTCACCAGTGTGGTTGTCGGGGTAACGCTTGGAGTTTTTGTCCTCCTCTCCATCATTACTGCCGGCTTCATCATCTACTGGAGGAGACAAAACAAGAAGGACTCTTCAGACATCCAGATTCACTCGATGAGCAGAACCGTTGTTGTGAGGGTGGAGGACTATGAGGCTTATTACAAGAAGCAGAGAGCAGACTCCAACTGTGGTTTCGCTGAGGAGTTTGAGgACCTGAAGCTAGTGGGAACAGCCCAAGCAAAAACCAGCGCTTTGGCCATGGAGAACAAGTCTAAGAACCGCTACAACAATGTGCTTCCCTGGTTACAACTCCAGGAAGGAGTTTATTGCGGCCCAGGGTCCTTTGCCCGGCACTGTCAACGAGTTCTGGAGGATGATCTGGGAGAAGAACGTCCAGACTCTGGTCATGTTGACACGCTGTAACGAACAGGGAcgaGTCAAATGTGAGGAATACTATCCATCTGAGACCAAGCACTTTGAGAATATCACCGTGACAACCACCTCTGAGATCCCCCTAGAAGACTGGACCATCAGGGACTTTGACGTAAAAAATGTGAAGACGGTTGAGACACGCTCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186554 lncRNA upstream 40843 57995304 ~ 57999495 (+) False G163544
TU186557 lncRNA upstream 40843 57995349 ~ 57999495 (+) False G163544
TU186559 lncRNA upstream 40843 57995349 ~ 57999495 (+) False G163544
TU186561 lncRNA upstream 40843 57995349 ~ 57999495 (+) False G163544
TU186541 lncRNA upstream 40843 57996116 ~ 57999495 (+) False G163544
TU186619 lncRNA downstream 9929 58116793 ~ 58176299 (+) True G163591
TU186701 lncRNA downstream 110127 58216991 ~ 58223485 (+) False G163662
TU186702 lncRNA downstream 110482 58217346 ~ 58223485 (+) True G163662
TU187400 lncRNA downstream 389328 58496192 ~ 58497512 (+) True G164289
TU187416 lncRNA downstream 397184 58504048 ~ 58504313 (+) True G164304
XM_021566934.2 mRNA upstream 242704 57795263 ~ 57797634 (+) True LOC110492531
XM_036951608.1 mRNA upstream 250943 57667227 ~ 57789395 (+) False LOC110492500
XM_021567035.2 mRNA downstream 3259 58110123 ~ 58111180 (+) True LOC110492604
XM_021567123.2 mRNA downstream 146740 58253604 ~ 58296746 (+) False LOC110492647
XM_021567098.2 mRNA downstream 154677 58261541 ~ 58296746 (+) False LOC110492647
XM_036951861.1 mRNA downstream 155383 58262247 ~ 58296746 (+) True LOC110492647
XM_021567141.2 mRNA downstream 209413 58316277 ~ 58322551 (+) True LOC110492681
TU186506 other upstream 108347 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 986696 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 1787740 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 2093093 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 3311478 54728296 ~ 54728860 (+) True G159889
TU186698 other downstream 108813 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 1838844 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 2408768 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 2744568 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 2744568 60851432 ~ 60866455 (+) True LOC110493059

Expression Profile