RNA id: XM_021567035.2



Basic Information


Item Value
RNA id XM_021567035.2
length 678
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110492604
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 58110123 ~ 58111180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAGGTAGGATATCAGTTCCACAtcaagagcagcagcagcagcagcacagagagacaAAATGACCTCCACCGGCATGAACATGAACAGCAAAATCACCTTCTACGAGGACAGGAACTTCCAGGGTCGTTCCCATGAGTGCATGAGCGACTGCCCCGACATGTCCTCCTACCTGAGCCGCTGCCAGTCCTGCAGGGTTGAGAGCGGCTGCTTCATGGTCTACGACCGCCCCAACTACATGGGAAACCAGTGGTTCATGAAGAGGGGAGAGTACTCTGACTACCAGCGCATGATGGGAATGAACGACATCAGATCCTGCCGCATGATCCCCATGCACAGAGGATCTTACAGGATGAGGATCTACGAGAGGGAGAACTTCGGAGGTCAGATGCACGAGATGATGGACGACTGTGACGACATCATGGGTCGGTACCGCATGAACAACTGCATGTCCTGCAACGTGATGGACGGCCACTGGCTCATGTACGAGCAGCCCCAGTACAGAGGCAGGATGATGTACATGAGGCCTGGAGAGTACAGAAACTTCAATCAGATGAGCACGGGCTCTATGGGCATGAGGTCCATGAGCATGAGGCGTATCAATGAGTCCTGTTACTAGATATTGCTTTACTAATGTAAAGAAGAGAAGCCATTgaataaaatgtatataaaaataaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186554 lncRNA upstream 110628 57995304 ~ 57999495 (+) False G163544
TU186557 lncRNA upstream 110628 57995349 ~ 57999495 (+) False G163544
TU186559 lncRNA upstream 110628 57995349 ~ 57999495 (+) False G163544
TU186561 lncRNA upstream 110628 57995349 ~ 57999495 (+) False G163544
TU186541 lncRNA upstream 110628 57996116 ~ 57999495 (+) False G163544
TU186619 lncRNA downstream 5613 58116793 ~ 58176299 (+) True G163591
TU186701 lncRNA downstream 105811 58216991 ~ 58223485 (+) False G163662
TU186702 lncRNA downstream 106166 58217346 ~ 58223485 (+) True G163662
TU187400 lncRNA downstream 385012 58496192 ~ 58497512 (+) True G164289
TU187416 lncRNA downstream 392868 58504048 ~ 58504313 (+) True G164304
XM_021566992.2 mRNA upstream 680 58040338 ~ 58109443 (+) False LOC110492579
XM_021567000.2 mRNA upstream 680 58040338 ~ 58109443 (+) False LOC110492579
XM_021567008.2 mRNA upstream 680 58040338 ~ 58109443 (+) False LOC110492579
XM_021567023.2 mRNA upstream 680 58040338 ~ 58109443 (+) True LOC110492579
XR_005037372.1 mRNA upstream 3259 58040338 ~ 58106864 (+) False LOC110492579
XM_021567123.2 mRNA downstream 142424 58253604 ~ 58296746 (+) False LOC110492647
XM_021567098.2 mRNA downstream 150361 58261541 ~ 58296746 (+) False LOC110492647
XM_036951861.1 mRNA downstream 151067 58262247 ~ 58296746 (+) True LOC110492647
XM_021567141.2 mRNA downstream 205097 58316277 ~ 58322551 (+) True LOC110492681
XM_021567187.2 mRNA downstream 686203 58797383 ~ 59033367 (+) False LOC110492721
TU186506 other upstream 178132 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 1056481 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 1857525 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 2162878 55946143 ~ 55947245 (+) True G160569
TU182462 other upstream 3381263 54728296 ~ 54728860 (+) True G159889
TU186698 other downstream 104497 58215677 ~ 58216383 (+) True G163660
TU189317 other downstream 1834528 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 2404452 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 2740252 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 2740252 60851432 ~ 60866455 (+) True LOC110493059

Expression Profile