RNA id: XM_036951861.1


Basic Information

Item Value
RNA id XM_036951861.1
length 5415
RNA type mRNA
GC content 0.43
exon number 20
gene id LOC110492647
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 58253604 ~ 58296746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGATGCAATGTTTTGTGATAAGGAGGAGACTGCACCCAAAGTGGGTTATGTATACTACCACGGGGATGCCATACGCCATGTTAAGATAAAGACGACTGTGTTTAACATGCTTAAGCGGTTGGACAAAATCCGGTTCCGGGGCCAGCGGACAGATGTGTTTCTGGATCTGGGCGACTCGCCCAACACATCTGACACTGAATGTAGCGAAGAGATTCTGATGAAGCCTCGGCCCTCACTTGAAATGAAAGACACTGAAGAACTGCAAGACCCTGCTGGTCCAGGGACACTTACGATGCCTGCTGCAGCCATCCAGGACTACCAGAGGGCTGAGACAGATCGACTCAACGACTTGAAAGGCCACCTGGAAGTTGCCTTACTGGAAAAGCACTTCCTACAGGAAGAGTTGAGGAAACTTCGGGAAGAAACCAACATAGACACTCTGAAACAGGATTTGGAGAAGGAGAGATCGAAGAGGCTGGACTTGGAACATAAACTGAACTTGGATGTTCTCAAAATGGGACCGGAAGATTCCCCATCACGGCGACCCAGAGAAACGCCTCCAACTGCCAACGGTACAGACAAGCAGAAGGAGACCATGTACTCATGGCTGCAGGCGTGGCTGTACAACCGGTTCGGAGCGTACATCGGGGATTTCCGTTTCCAGCCGGAGGAGAACACAGTGGAGCCAGAGGAGCCGCTAAGCGCTAAGAGATTGACTGAAAACATGAGAAGACTCAAGCGAGGTGCCAAACCTGTCATAAACTTTAAGAGGAACCTTTTTGCCTTATCCAGCTGGCAATCAGTGTATACGTCAGCCTTCGCCTTCATTATCTATATGAATGCAGCGTGGCACGGTTGGGCCATCCCCATGTTTATCTTCCTAGCCATTCTAAGGTTGTCCTTGAATTACCTAATTTCCAGAGGTTGGAGGATCCAGTGGAGTATTGTGCCTGGGGTCTCTGAACCTGTGGAACCACCAAAAGAGGATCTGACTGTTTCAGAGAAGTTCCAGTTAGTTCTTGATGTAGCTCAAAAAGCACAGAATCTTTTTGGAAAGATGGCAGATGTCTTGGAGAAAATAAAGAACCTGTTCATGTGGGTGCATCCTGAGATTACTCGGAAGCTTTACGTTGGTCTATGGGTGGCCTTGATCTGCTCCTGTCTCATCCCCTACAAACTCATGGGCTTTATGATCGGGCTGTATGCAGGGATCAAGTTCTTCCTAATCGACTTCATGTTTAGGAGCTGTCCCAAACTAAGGGACAAGTATGACACGCCGCACATCATTTGGACCAGCCTGCCCACTGACCCCCAGCTGAAGGAGCGCGGGGGCGCGACGTTGTCCAGACGGCTCTCTGGGTGTGAAAAGaTCCATCCGACGGTAGCTCACGGCAGTCTAGGAACAGCCTTACCATGTGGTATCAGTCTAGAGGAACAGACTGGCAGAGCCTACAATACTAAGAAGGGGGCTTTCCACGAGGTCTTCAATCTTTCTGGGGATGAGCGCCCCCTGGCAGTGTGTGAGAATGGCTGGCGATGCTGCTTGATCAACAGGGACAGGAAGAGTCCCACAGACTACATCCGTAATGGTGTGCTCTTTGTCACTGAAAATTACCTTTGCTTTGAAAGCTCAAGCTGCAGGTCAAATTCCTCTAAAAAGAATAAAGTCATCAAACTGATTGACATCACTGATATTCAGAAGTACAAAGTCTTGTCTGTATTACCTGGATCTGGAATGGGAATCTCCATAGCAACACCGTCCACCCAGAAGCCGTTGGTGTTTGGTGCCATGATCCACAGGGACGAGGCCTTTGAAGCCATCTTCACACAGTACACGAAGAAAGTGACCATGACCACAGCCACCAACCCTGAGACCTAACATACCAAAATGGCTGCCTTCACCAGGGATGTCCTATACTGACACAGCGAGTTCTCTATGTAGTACACTGCTACTGGCCAATTAGTATATCTGCAAGTATGTTAAGCTAGTGTCCATGCCAAGGTGGTGGATTCCTCCACCAAGCCACATTAGGTTAGTATGTGAGGATGGTATCCACTTGATCTGAGGCCTGGTCCATCACTATAAAGCCCAAGATCTTTGTATCCTCTCGCTGATAACCACAACTTCTCATTAGGTCTAAGGGACTACAACTGGACCCGCACACCATCGCTGACTCCTACTGGTTCGGTCGAGGCTATTGCATCTGGGGAAGTAGCCTTTTGAGCCAAGAGAGCACACTTGTCttaatttgctgttgttctgtacTCGGGTAATAGCTTTTCAAGTCTCTCTCTTTTGTTGTCAGTTTTTCTTTTGTACACGCGTGCGTAGTGTGCACATGCGTGAGAATGTGTGCTGCTaaaaagcgtgtgtgtgtgtggtggggggggtgaTAATTTTATGGTCAACACTGTTGTGCTGTTTCAGGAGGAGGCTGGATCTCTTTGCCTATCTGAGAGGACTGCCTGGCACTCCCATTTTGTGTATCACACACATTGATGCTATTTGCTTCAATTGTTGCTCTCCTTCAATAGGATGCATTTGGTTTGATATAGATATCATTGGTGGCCTTGCACAGGTCTTAACTCacattttgtaaagtgcaccagaaACCACGTTTATGAATACCTCGAGCCTTCATGTTTCTCAGTTAATGAAAGTGCTTTAGATATCATTTCTGCAATAGCCTTTAGGTGTAAGTGTTTTATTTAGCCTTTTTTTCTGAGAGAGGAGGGACGGAACTGGAGTCATTTAATGATGAGCAGCCAAAAGCCTGAAGTTATTGTAGTCTATATCTTTCTCGCACACATTTTTGTCTCGGCAAAGAAAAGGTATGGATTTACATGTCCAGGTTAAGGAGTTATAATGCATTCATAAGCACCACATAAACATGACCTAATGTCAACATAGTCTTTCTGAAGCCTCAGAGTACATTTATTATGTAGAACAATATGTGACTTGTAATATGTGACATTCTACATAACTAATTGGTTCAGTAAAAACGATAACTTATGTAGGTTTTGTGGAATGCTTATGAATGTACTGTAAGTACTTTATGGGACAGATTTCATGTAAAGCAATTCCCCAAAAAATCAGGAGCCTTTTCTACACTTCCTTGTTCCACCACTCTCAATGCCTTACCTAATTCTCTCACAGATTTAGGCCAGGATTCAAACCAATGCAGCACTGCACTTTCGACTGACTCTGACGTGTAACTTCAGGTAAATTGCCATTGGATCACGCATCCACATGTTCTTAAAAGTCGAGTGCAGTGCAATGCCGGTTATTTGTGTTAGTTTGAATCCCAGACAAAAATGTTGGCAGTAAAGTTTTCTTTTTGGTTTTGACAGCAAACGGGAATGGGGTTTATATTAAAATGCTAGTAACCTTGTCAAGAGGTTCGGACCTCTTGGTGTAATggttaaggtgttggcttgaaGGTCGCTGGACCCGGCTTTGAGTGCCAGTCGGGGCTACCCCCTGAATTTGCTaaattggtgtcagaagtgggatggtgTCTGTGAGGCCATCGGAGAGGCGTGTACACCTGAGGGACTTGGTATAGAGaaagtatggggggggggggccctcTCCCGAAGGAAGGGGGTAATGTAGCGTCCTTAACCCAACACCTTGCGACCTCGTCAAGATGTTCGTAGCTCTTGACGTAACGGTTAAGGTGTTGGCTACAATATGTTCTAGTTGAGCACATGCTAGGGAGGCTAACTGGACATTTGCTTGATGCCTTTTAGTCTACACCAAGTAATTTAGGTATCTCACTCGCCAAGCCCCTCAAAAAAAGTTAGATCTACTTAAGAAGcacagaatgtactgtatgtgtgccaaAATCTTTACTTTATTTCACTGCTTGTCATTTAGTTATTTCACCCTATATCTGTAATGTTTACAGATGTTAGGTTCTGAACTCCACTGCTTTAAGTCAGTTTGATTCCTTGTAAGACTATGAGGTCATGAAGACTGACCGGGTACGTCTTGTGATGGAGAACTTCTGAATGCTGATAAACCTGAGTGGTCACATCTCAGCCAATCAAAGACTTCCCCTGGGTTTAGCCACACTCTTTGCCCGTGGATGGTGAATTGAAAGGTGTCAATTCGTGGAGTCATGTTGCTTCCAAATCTGTTTGAATCGCCACTCGCTAAACAATGTCAATGTATGGCATGGCCGTCAACTTGAAGATGGAAAATCCTCATTGTAGTAccgtgtgtgtcccaaatgatcaaatgtgttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaagccttgcTAATCAATCATGCCCTTGTTGATCGATCATCCTTTTCGTTGCTTGCTAATTCCCAGTATGATGGTAATGGCTTCACCAAGTCTTCCGGTAGGTTTTTTTGTGTAGTTTCTGCCACACTGTTATGCTCACCTACCATGTCATTTCCCAATAGTTGAGGAGGATCAACACGGGACTGGATACATTTTCAGAGGAGGATGGATATTGTCTCTATGGTTCTGTGTCAGAGGGGGAGAGATTGTTTCAACCACTGAGGCTTGCCAACTGAAAACTGCAGAAGTAATCATGTGGCCTCTGTGTTAAACaagtacagggccttcagaaagtattcataccccttgacttattccacattttgttgtgttgcagcctgaattaaaaaacaTAAAAATTATCTCACCCATCTgaacacaataccctataaatgacaaagtgaaaacatgtttttagaaaatgttgcaaatgtatttaaatgaaatgcagctttccacaccttgttTGTGCAACAGTTGGCAATTTTTAAAAGTTGTTTGTTTACCTATCTACCAATAAGTGCCATTTGAGAGGCATTTGAAAACCTCCCAGGTCTGATGTCGAATCTTTATATGAAATTCATTGCTCGAATTAGGGACCTTAGGCTTGccctaacaaaggggttgaatacttattgacccaagacatttcagtttttcattttttattaatttgtaaaaatgtctaaaacgttgacattatggagtgttgtgtgtaggccagtgacaaataaATCTAAATTTGATcctttttaaattcaggctgtaacacaacaacatgtgtgaaaaagtctaggggtgtgaacactttcttgAAGACCTATTGTATTTATTTGAAATCAAAGTACTTGTTTGCTAATTCATTTTTCATAATACCTTCCCAATCAATATGTAACTGTTTAGGAACGATAGATAACCAGTTACAGTAGGTGTGAATACGTCTTTGTAATCTGCAGTGTCCACTGCCCTCCCAAAAAATTGTACATATGAAATTATGTAATGAACACATTTTAAATCCCTGTAAAGTTTTTAAAGAAAATTGTTTAGTGTAAAATGTTATGTACATTTTCACTTAAGTAAACACATTTTAAAGTAA

Function

GO: NA

KEGG:

id description
K23554 GRAMD4; GRAM domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186701 lncRNA upstream 38762 58216991 ~ 58223485 (+) False G163662
TU186702 lncRNA upstream 38762 58217346 ~ 58223485 (+) True G163662
TU186619 lncRNA upstream 85948 58116793 ~ 58176299 (+) True G163591
TU186554 lncRNA upstream 262752 57995304 ~ 57999495 (+) False G163544
TU186557 lncRNA upstream 262752 57995349 ~ 57999495 (+) False G163544
TU187400 lncRNA downstream 199446 58496192 ~ 58497512 (+) True G164289
TU187416 lncRNA downstream 207302 58504048 ~ 58504313 (+) True G164304
TU187419 lncRNA downstream 209134 58505880 ~ 58506095 (+) True G164307
TU187424 lncRNA downstream 212563 58509309 ~ 58509560 (+) True G164312
TU187429 lncRNA downstream 217429 58514175 ~ 58514592 (+) True G164317
XM_021567035.2 mRNA upstream 151067 58110123 ~ 58111180 (+) True LOC110492604
XM_021566992.2 mRNA upstream 152804 58040338 ~ 58109443 (+) False LOC110492579
XM_021567141.2 mRNA downstream 19531 58316277 ~ 58322551 (+) True LOC110492681
XM_021567187.2 mRNA downstream 500637 58797383 ~ 59033367 (+) False LOC110492721
XM_036951914.1 mRNA downstream 558924 58855670 ~ 59033366 (+) False LOC110492721
XR_005034527.1 mRNA downstream 1091204 59387950 ~ 59390103 (+) True LOC118937284
XM_021567226.2 mRNA downstream 1105431 59402177 ~ 59643249 (+) False LOC110492752
TU186698 other upstream 45864 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 330256 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 1208605 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 2009649 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 2315002 55946143 ~ 55947245 (+) True G160569
TU189317 other downstream 1648962 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 2218886 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 2554686 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 2554686 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 2765847 61062593 ~ 61074591 (+) True G167288

Expression Profile