RNA id: XM_036951892.1


Basic Information

Item Value
RNA id XM_036951892.1
length 4942
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110492691
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 58355406 ~ 58389301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATTTCTCTCCAGCACCAAAATTAGAATACGTCGTGACGCTGTGCGTAATGTTTAGTTCGTCCCCTATGGTGAATGAAGAATCCGCTATCCAATTGTGGCACTGCCGTTGTCGAAAATAGCAACATTGTTTCCTTCTGTAGACAAAGGTGTCTCGACAACCCGATAAATTACTGAATAGTCATCCAGTTCTGTGGCTTCTTGGTGAAGACATGGAAAAACAACCACGGTTGTTGGCATCCCAACTCctactgaaaaacagcttattcGAAGTGTCGTTAAACCGTGTGCTTCTGACATGGAAAGAGGTTGCGACCAAGAAAAAACGCGTTTCTGGGGGCATGCATCACCCATTTAAAGTCGGTTTCTGTTTTCCTAAGTTTCTGCGCAGAGACAAAGGAGAGTCAGGTACCAGTCACGGTGTGTCAGTGTCTGAGATCCTAGCAGTCAGGGAGCTCGACGTGGACAGCGGGACGAAAGATGACGGCAGGTGGCAGAAAATGCCTCAGAAATCGACCGAGGCCTATCCATATGCATTCACAGTGTCCTACGTGGAGAGAGCGTGGCAGCACCGCTGGCGGTGTAGTGACGTCACCTTTCACTGCCTAGAGGGGGCGCTGTGTCAGCAGTGGGTCCAGACCATCAGAGAGCAGCTGACAGCACTGACCAGCAGACCCAAGCATTTGCTGGTGTACATCAACCCCTATGGGGGCAAGCAGCAAGGCGAGCGTATTTACGAGCAGAAAGTCGCCCCTCTCTTCACCCTTGCCTCCATCTCCACGCACGTGATTGTTACAGAGCATGCCAATCATGCCAGGGACCACCTGAGGACAGAGGCTGAGTTGAAGAAATATGATGGagtggtgtgtgtgggcGGGGACGGCATGTTCAGTGAAATGGTTCACGGCCTGGTCTCCCGGACCCAGAGGGACAACGGCGTGGACCAGAACAGCCCGGAGGAGAAGCTGGTACCCTGTACTCTGCGCATCGGCATTATACCCGCAGGTTCAACGGACTGCATCTGCTATGCAACTGTAGGCATCAACGACCCTGTGACCTCGGCCTTACACATCATAGTGGGAGATGCCCAGGCAATGGACGTGTGCTCAGTCCATCACAACAACACATTCCTGAGGTACTCTGTGTCCCTGCTTGGGTACGGTTTCTATGGCGACGTGCTGGCAGACAGCGAAAGGAAACGATGGATGGGACCAGCCAGATACGACTTTTCAGGTTTTAAGACGTTTCTCACACATCACTACTATGAAGGGACTGTGTCTTTTCTACCAGCAACGGACATATTGGGAACTCCACGAGACAAGACCAGGTGTAGAGCTGGGTGCTTCATATGCCAACACAACGGACAGCTGTATTCCGAGGATGCCCCAGAGATTTGCGAGACTGATCCAGATGTTCCAGACAGTGAATACAAAGGGGGGTGGCGGGTGATCAGAGGGAAGTTCCTGGCCATCAACGCGGCCAGTATGAGCTGTGCCTGTCCCCGTAGCCCCAAGGGCCTGTCCCCCGCTGCCCACCTCGCTGACGGCACCACTGATCTCATCCTCGTACGCAAGTGCTCTCGATTCAACTTCCTGCGCCACCTGCTACGCCACACCAGCAAATACGACCAGTTTGACATGACCTTTGTAGAAGTGCACCGTGTGCGGCGCTTCCGCTTCACCCCGCGCTACTGCCAGAGTGACTCCGAGTTGGACCTGCGGGAGAATGGCAAGAAGCTCTTCAGCCAGATCTGCCGAGACCACCCGGCCTGCAGCTGTAGCCCTGCCTACAGCAGCTGGAACTGTGACGGCGAGATCCTCCCTCATGCTGCCATTGAAGTCGGAGTGCACTGCCAGTTGATCAAGCTGTTTGCGCGAGGGATCGAAGAGCAGCCTGTGTTTGAGGACCTTCCCAACCCGTGTGCAGTATAGATCCCCCCCCACTGCTGCCCTACCCTATCAAAGTCACTGGAACAGTCCTACTGCATTTCAAAGGCTACTGCTGGCATATCCTTACCCCTGTGCCCTACCTTTTTCTGATGTACTTTGAGGTCTTTCAGACATCTGTTTTCTGGGGCCATTTTTGTTTGTCTGCCACATTTTAGAGGTCACAAGTTCACAGGTCAAAGAGTACTGTTGATGGTACACTTACAGAGAGGTTCACTATCCACATCCACTATACTGAAGAAGAAATCATGAAAATACTAAAGCGGTATTGAATGTAGCTCTTTTCCGCTCTCCTTTTTCAATCGAGCGATGTTAACCTAGCAATTAACATGCTGTTCAACATTTTTAGAACTCCTCTTTGCACGTTTTACAATGTATGCTGCTCCAAATTATGAATAACTGTTACGTTtagtttatttattcatttagaGAAAACATTTAGAGGATGTTTGAATTTTGCTAGCTGCTTGCACTTTTGTTTCAAATAGGCCGTATGCGTTGTGACCTTATAAGCAATGCCTTGTTAGAAGTTATTTTACAGCACGAATTTGAATACATATGTATTGATGATCGAATATTGGGTGAACCAGAGAACTCTCtcgggcagtgtttcccaactccagtcctcaagtACCCCCAGCAGTACATTATTTTTATTGTGGTCCCGAACAAGCACAACTGATtctacttgtcaactaatcatcaagcccttgacaattgaaccaggggcctcatttatcaaccgTGCATACATGTCTTACTTAGTTCTGAGGTACGTGGAGATTCTAGAATTTCCGCAACAAATGTATCAAACTGTCACACGCAACATATACATACGCATGTTGTGATTGTTAAACCATACTATATTTGTGGGCTTGTAAACGAGCACTAAAACCTGACTTGGAAAACACCCCCCATTCACATTTTATGGTAACAAAAATTCCCACATTTGCTGTATGACACAATTCTGTAGATGTGcgtgaagaatgtttttttttattttttttttaaatatatatattttgcagtGACCTATGCCTCCTATAGCGAGTGCCAAACACTGTCCACGCGTACTGCACGATTGATTGTCCATTCAAACAATTTAAAAGTAAATGCTACAGCCCACACTTCTATGTAAGATACTAATTGTTGTTGAATATTTTGTTTATCAATAGAAGATAGAAACACAATCTCCTGCCTTGGTATAGGCTCTGAGATGAATAGGCTATTGTGTCTCGCTCCTGTCACAAAGCAATACTGTGGCCTACCCATACTGTCATATAGGCTACCGGTCTATTTACTTTTGAATGAGTAATGGATAAACGGTAGCCTAATATTTGTTGCGTAGCGGGAATAAAGCAGTCGTCAGAAAAGGAGCGATGTCCTGCAATATGATTTAGGTGTATATAATGAAAGTTAAATTAAATATATTAGGCAACATGCTGCTACGCGATCTTCATACCAACGGCAAATGCATCCGTGTTGTCATTAGACCAACGTTTTGTTTTTGTTCGCCTACATTGTTAGAATTCCTGTGCATCAAACGCCTCAATTTCCCCCAAAATAACAATATTTGCTTGCAATACCACTAGAAGTTGCATGGAGCTATGCCCGCTTTTCCATCAAGTTCAAAattgtgtgctgttgggggtacttcaggacaggagttgggaaacactgctctaggggtACCAGATACCAGCCAGACTCTTACCTTTAAAGGAGAAgttagattattattttttacaaacaAATCTGTATTTCGAATGTAAATAGTatgttatagaagggtccagacacttttttttgtttgcGATTTCACGTTTGTGAGAGACCCCAAACAGTgattcacttcctcatcctcgttGTGCAATACGGGGGCTCTGAAGAAAACATGAGGAAATGCTCCAAATACGTAGTCTTTTAAATGACAATGCTCTCAGTATAGTAATGCAGGTCTTTAGATATTGTACACATGTAATTGTCATTCCGAAACTTTTCCGCAACGTTATATTCAGTTGGCTTCTAGGTACCCTCATTAAGGCCATAAGTCACTAAAGCAGGTCTTAGTAACTGGTATCTGGGCCTTTGAGCCATAAAATTGGCCAATGGTGTCCTTAAGCGATTAAGATGTTTCAAATGTGTAGTCTAATCAACCCCTCCTCTGGTGGTAGATTTTCTGCGAATCTCTTAAGAGGAACGTGTCCGTCTCCCCTCTCCATATGTCTGTCTAATAAATCTTTAAAAATAGAAGTTGTTCATGTCATCTTTTCCATACAGCATTTCTCCACACCATGAACAGTTTTAAATTCTAAAGACCTCACTATACTAGGAGCTTTCCGGTTTCTAAAAGGACttatttgggtgtttttggagctTTCTCAGAGCTCCTGTACTGCACAACAAGGATGAGGAAGTGAATCGCTGGTTGGGGTaaaaaaatagagacataaaaacacTACAATGTCCTTTAATGTGACATTGAAACAAACCATCACCAAATCTAATGGTTCACAAAATGTCTAGACTGGCAAGATTCGCATGGGATGCTGAAAAATCAACAATGTAGCTCGTCAACACAGTGTATGCGCTAAAACGTGTGACTTGTTACCATAGAAATAGTGGCTTTAGGCACATTTTACCAAGCTATCTCTGCCATTTGCGGCATTGTCATTCCAGGTTTAGATTCCTTGATATCTGAGGTATAGCAGTTAAAGGGAAATTCCACCCAAAAACTATTgacatttgtttcattagtccattgatTGATATTGTCTCAATGTTTtccatgtcagcaatcaagttttcaagatgtataactttcaaaatacagaaatacagccgaTATGATGCATTTAGCgtcaaaacattttgggactatatcaaacAATGTACTAATGAAGCAAATACTAAAATATTGTTTTTGAGTGGAGTTTCCCAAAAAGGattctggttcgaatccctgactAGTTgagaaatctttttttttttcttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187187 lncRNA downstream 98422 58258020 ~ 58259366 (-) True G164080
TU187046 lncRNA downstream 336312 58021094 ~ 58021476 (-) True G163944
TU186888 lncRNA downstream 562809 57794615 ~ 57794979 (-) True G163819
TU186912 lncRNA downstream 592665 57761150 ~ 57765123 (-) False G163837
TU187306 lncRNA upstream 43508 58432805 ~ 58433005 (-) True G164195
TU187346 lncRNA upstream 69980 58459277 ~ 58459589 (-) True G164235
TU187368 lncRNA upstream 81031 58470328 ~ 58470584 (-) True G164257
TU187373 lncRNA upstream 86436 58475733 ~ 58475946 (-) True G164262
TU187667 lncRNA upstream 176433 58565730 ~ 58566380 (-) True G164552
XM_036951841.1 mRNA downstream 109615 58210911 ~ 58248173 (-) True LOC110492633
XM_021567063.2 mRNA downstream 122393 58208496 ~ 58235395 (-) False LOC110492633
XM_036951766.1 mRNA downstream 157144 58118987 ~ 58200644 (-) False LOC110492612
XR_005037374.1 mRNA downstream 162866 58186283 ~ 58194922 (-) True LOC110492624
XM_036951749.1 mRNA downstream 331790 57998305 ~ 58025998 (-) True LOC110492572
XM_021567205.2 mRNA upstream 954862 59344159 ~ 59356493 (-) False LOC110492741
XM_021567214.2 mRNA upstream 954862 59344159 ~ 59356494 (-) False LOC110492741
XM_036951921.1 mRNA upstream 954862 59344159 ~ 59356495 (-) True LOC110492741
XM_021567256.2 mRNA upstream 1427428 59816725 ~ 59823875 (-) True LOC110492772
XM_021567266.2 mRNA upstream 1437327 59826624 ~ 59841614 (-) False LOC110492782
TU187140 other downstream 182700 58173659 ~ 58175088 (-) True G164037
TU187106 other downstream 226415 58129409 ~ 58131373 (-) True LOC110492612
TU187105 other downstream 239567 58111341 ~ 58118221 (-) True G164003
TU186917 other downstream 568405 57776469 ~ 57789383 (-) True G163839
TU186224 other downstream 757570 57595537 ~ 57600218 (-) True LOC110492469
TU188907 other upstream 1092660 59481957 ~ 59482314 (-) True G165742
TU188911 other upstream 1098164 59487461 ~ 59487840 (-) True G165746
TU189225 other upstream 1438779 59828076 ~ 59830015 (-) True LOC110492782
TU189774 other upstream 1530581 59919878 ~ 59920330 (-) True G166541
TU190051 other upstream 2013051 60402348 ~ 60406808 (-) True G166794

Expression Profile