RNA id: XM_036951914.1


Basic Information

Item Value
RNA id XM_036951914.1
length 4202
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110492721
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 58797383 ~ 59033367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGACGTCACGGTCAGGTAGAGCGCAGTGAAAGTCGCTCGTGAACCTAGAACCGGGCAAACCTAATAGGTACAGTGAACAGCATAGTGACGCAGCAATGTCTCGCACGAGCTTCCCATCATTCATTTCACAAGTTATCAGGGGCTTAGCATTGAATAGCACTGGACCTGATGCTCAGCGTTGTCGGTGAGCAATGAGGTCCTATTAGATGTGGTTTCATCTCGACTTCATATCTATCAGTTGTGGGAATTTACAAGGAAGGTTGATCTAACTTGGAAACAGCGAAGATGGACGTATCGCAAACCAACTACTGTCTATTTAGTGATATCTCAAATTCGGTAAATATCGAGACAAAATTAATTTTACCGAATTGCTGCAAAGTGGTCCGGTGGCGCAGCCGTGTCATATAGGCATCCTGGAGAGTGTGGCTAGCCGAGTCACTGCGTTCGAACCTCAGAGAAGAATTTGCGGTGACAAGCAGGTTAATTTGAATAGCCCGTGAGAAAATCCCTCACTTGTAATTATGTGAGTGATGGTCCAACGACTTGAACTTTTCTCTCCGCTATCTTTATTAAAGAACGAAAAGGTTGCATTCATTTGGAATTGAAGGGATCATATCAAGTCTCTCTCATGGATTGTGCCGATGTTGTATTTTACTTTGAATTCAAGCCCACAGAGTCGCCTTAGGGACTTGTCAACTGATATTTGTTTCATTTTTAATTTTTCAACACCGCTGCATTGGATCAAAAATGGATTTGTCATTGTAGACTACTCCTGCTGCTGAAGACCGCGCTCTCCTTTGGGTGTTTTTGACTTTTCTTTCTCAACGATGCAGCTCATCCGACTAGCGTGGGCTTTAACGGGAGCTGCAATCTGCTGTTTCGTTATCCTCCTTATTCACTCACATGTTCTAAAAGAAGGTCAGTTGGCAGCAGGTACTTGTGAGATAGTTACTCTGGACCGGGACAGCAGTCAGCCACGGCGGACCATAGCACGACAGACGGCGAGGTGTGCCTGCAAAAAGGGTCAGATTGCAGGCACCACGAGAGCCAGTCCGGCTTGTGTAGACGCTCGCATTGTGAGGAGCCGGCAGTGGTGTGATATGATGCCTTGCTTGGAAGACGAGGGCTGTGACCTCTTAGTAAACCAGTCGGGCTGGACCTGCACACAGCCTGGGGGCCGGGTGAAGACCACCACGGTCTCCTGACGATGGCGGGGAATGACTCTCcggaaagagagaaggaatggTGTGTGAGCTGCTTCCCATGGTCAATCGCCTGTGTGGATCATACGTTGTCTTATCATCAGCTGTCCGTCCATTGTCCTGTGCAACAGAGTGAAACCACATCAAATCTACGGTGCCAAAGGCCCGGACTCCGAATACAGGAGCTGGAGCTAAACATCGAACCGATGGACTCTGCAATACTGTATTATTCTGTGGGAGACCAAACTTATTTTTCAGTGGGTCGTCTTGAAGTGGGTCGTCTTGAACTTCTGGATATGACCCAGGACGAGATTCTCTTTTGGAGTTTACACTTGGCAACTCCTCTGCAGTGTTTTTACAGAATACAGACCAAAGTTAAAGACCATGTTATGGAGGACACAGTGGACTATGGGATAAGGGGTTTAGAGACGTATTAAAGTTGATAAAACATGCAATCCTGTATTCCCACTTACACTTTGATAGACATACCCACAAATGTACCCACGGTGACTTATTTCGCAGAGTAATTGTGTACAAATTAATGACAATAATTGGAAGGCAAAAGAAATAAGTCAAAGGACATTGTGTAATTTGTCAATGACATTTATTTTAGACTACTAAACTGTACTTGTGTACTCACTGCTCTATTTTGAACATTAATTAAATCAGATTTACATTTTCCATTGCTATAATATTTTGAAAATTTGCAGTCAGCATGGCTGGTTATAGTGAAACAAGCAAATCATTTCTCACcaggaaagaagaggaggaaaagagtAAATCCGTCATATCTGTTTGGGGGAAAGAAACATTACATGTATTTTCAAAAGCCTAAAGTTATATATTTAACAGTTTTATATGTTGTATCTTTGTAGAAAACCTTATTTAGCACTGGAACTGTGGTCACATTGCCAATCATAAACTGTGCATACACAATGAGCTATGTCCAGCTACTGGTCTGTCTTGTTCATTTGAACAAAGTCAAGTGGCTCTGCCTTTCCATTCTGTTGAATTATTTTTTCATCATAAAATCAACTATTTAACATGAAATGAGGTGGAAATTACAATATTAAAGCAACCAGACAATTGTACAGAACCCGTTTATGAAGAAAGGTTATATTTTCTAAATTTGTAGCCCACAGTTACctttgaaaatgttgcacaatttcAGGTTTTAATTTTCAACCCACCTTTACTACTTTAAACAACCAAGCTACTGCCATATTTAATGGAAGGGGGAGACACAACGAGACATTTCATGATTTTCAAACTGGTGACTACAGAGTTTGCAACTAAAGCTCAGAAAGTTATAACTTTATGTACATTTCAGCAAGTTAACTTTACGGGAAGCTCTTGAGCTAGTAAGCTTTGACCCTGCTGGATAAGCTACCACCAACATGCTGTTTTGCATGCTGTTCAGAAGAAACACCACTGAAGGTAGTGACCGTGTGAGCACCATTTTAGCAGTGCAAACCTCGTGTTGGGATTATGCCACAGCAGTTCAGAGTATTCTTCTTTGATCAGAATTGGTTCAAAATTAGCGACAAATACAAATAGTATATGGGCCAATTTTATTAGAGAGACTTCATGGGAATATCATTTGAATAGGTAAACGTTGATTTACATCATCCTACAGTATGCACCAGGCAAAAATTGATTTAATTAATTGTTTCCTCATTATTTTAACTGACATAATCCGGTTGCATCAATGTGGCTGGCTGGTAGAATGTGGAAAAATGCGTGTGTCTCAATAACATGCAGTACATCGTATGCATGGTATACGTTCGCAATATTTCCTTCTTAAAGATTTTAAGGCTGGAAGAACACTTGAACAACAATTCATGAGCATAGTATTCTGTTCTCAAATGGCCATTTAAagggaggttgaacagactgatttctcctctgttttcttcATCATCATTAAGAGCAGTATGATTTGATGTGGGTGTGTTATGTTCTCTATACAATGTGCAAGTGACGCGTCAATGTTACTTCTGCTAAGAATGAGCCTCAATTTTGCATCATCAAAGTCATGAAAACATGGCCGTTTAATATATATAAAATTGTATAGGTGTTTCTGAGTGAATTAACTTACTATGTTCCGTTTTTTCAAAGTATTTCATTAGAACCACACACATGAACTATAAATATTTCTAGAAATCTGTCCTAGATTTTTTTGTAAATGCTGGCTGGAAATATTCAGTTAAAAAAACCTGactaatataatttaaaaaaacacataAAATGGCCTGTAACTAACAACTTCTGACCGTTCTGTAAGTCCTCAGCTCGATATGGGAAAGCTCCGGAATGGTATACAGCAGGAGATTTCTCTAACTTTCTGCGACTTGTCTTATTTCTTGAGTGTCAAATATTTTGATAAAGGCATCCGGTACAAATATTAATATCATTTTACAcacagtcaggtccaaaattattggcacccttgataaaaatgagcaaaaaagactataaaataaataattcaaatactgagctatattgtatgctcaaacaAATGGGACAATTATATTATGTaaaactaatacaattgctcagagaaatatcttttttttaacaaaacaatatATCCTTTGTCTGTGCTTTTGTAcagccctcttcaattcaaaccacaggttttcaatggggttcaagtccggagactgagatggccattgcgaaatgttgattttgtggtcaattaacaatttctttgatgtgtgcttggtttattgtcttgctggaagaacCATTTGACAGTTGTGTTTGTGATGCTAACTTTAGCTCACGAATGTGAGgattttaaatgtttaaaaaaaccaAAGCTGTTAATTAATAACAAGTCTTGTTCTTTCAACATAACATTGGAGACAATGTATTGTATCAATATCTTGTTCGTTGTCTCATGTCAATCAAACAAGTCCCGAGGCTGTGCATGCtaatgacaattgggtacttctgCTGTCTGTAAAGAAATGAGTGGATTGTAGGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187830 lncRNA upstream 32812 58812281 ~ 58822858 (+) True G164706
TU187829 lncRNA upstream 42716 58794036 ~ 58812954 (+) False G164706
TU187536 lncRNA upstream 170848 58636882 ~ 58684822 (+) True G164422
TU187477 lncRNA upstream 286462 58568855 ~ 58569208 (+) True G164364
TU187429 lncRNA upstream 341078 58514175 ~ 58514592 (+) True G164317
TU188275 lncRNA downstream 56833 59090199 ~ 59090524 (+) True G165122
TU188284 lncRNA downstream 62991 59096357 ~ 59096581 (+) True G165131
TU188292 lncRNA downstream 67116 59100482 ~ 59100758 (+) True G165139
TU188294 lncRNA downstream 67514 59100880 ~ 59101358 (+) True G165141
TU188362 lncRNA downstream 118092 59151458 ~ 59151664 (+) True G165209
XM_021567141.2 mRNA upstream 533119 58316277 ~ 58322551 (+) True LOC110492681
XM_021567123.2 mRNA upstream 558924 58253604 ~ 58296746 (+) False LOC110492647
XM_021567098.2 mRNA upstream 558924 58261541 ~ 58296746 (+) False LOC110492647
XM_036951861.1 mRNA upstream 558924 58262247 ~ 58296746 (+) True LOC110492647
XM_021567035.2 mRNA upstream 744490 58110123 ~ 58111180 (+) True LOC110492604
XR_005034527.1 mRNA downstream 354584 59387950 ~ 59390103 (+) True LOC118937284
XM_021567226.2 mRNA downstream 368811 59402177 ~ 59643249 (+) False LOC110492752
XM_036951948.1 mRNA downstream 368811 59402177 ~ 59643249 (+) False LOC110492752
XR_005037383.1 mRNA downstream 438805 59472171 ~ 59477345 (+) True LOC118941102
XM_021567236.2 mRNA downstream 740797 59774163 ~ 59781857 (+) False LOC110492759
TU186698 other upstream 639287 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 923679 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 1802028 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 2603072 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 2908425 55946143 ~ 55947245 (+) True G160569
TU189317 other downstream 912342 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 1482266 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 1818066 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 1818066 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 2029227 61062593 ~ 61074591 (+) True G167288

Expression Profile