RNA id: XM_021567214.2


Basic Information

Item Value
RNA id XM_021567214.2
length 5518
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110492741
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59344159 ~ 59356495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCCCCACCTCCTTGATGTTTGCAATTTCTTTTCGCTGGGACGTAATCACGTCATGCCGTAACTGGGGAGCCGCACAACCGCATTGTTGTTGGCGAAAAGAAACCAGGGGCTGCTAGCTACTGATCGTTAGCAAGTCGCAAAAGGACATTAGTATTTGGTGGCTCTTCAGAAATATTTATGTTTGTAATAGAATCGAATTTGGAATTTAGACCGTCGTCGTTTAAATTTATAATTCAAAGCTGCTCGAGCGGTGCCCGTTGGATGAGAGAATTGTGTGTGGATTTACTGCTGCTGCTCTGCAGGCCACATCGCCATTGCTTGCAAGCGCTGCTGTTTTCAAAAGCGGAATTACTGAAAATACAAAGCATTTTTTTAGGTCTTCATGATGAAGAAAAAAGTACGGCATTATAATCGCATGTCCACGCCCCAGAGGCCCCCCTCTCCCATCAAACCTTCACCGAACAAGGAGACCCTGACATACGCCCAGGCCCAGCGCATGGTGGACCTAGAGATAGATGGCCGCGTGCACAGGATCAGCATCTATGACAAGCTGGATGTCATCGCTGACGATGATCCCACGGCCCAAGAGATCATGGAGTGCAACAGCAACAAGGAGAACAACGAGAAGCCCCAGCTAGTGCTGGTGCGCTCGGTGAGGCTCAAAAACAACCAGCAGAAGAAGAGCGCCGCCCTCACCACCACGCATGGGGCTGCCCCGCAAGGGAGTGCCCTCCTGGAACCCAAGTTCCGCGCAGTGGAGTACAACCTTCCCGCGGTGCCTCGGCGGCCCTCCATATATTATAAGTATTCTGAGAAGACTGCCGAAGAGCTGGATGAGGAAGTGGAGTACGACATGGATGAGGAGGACTACGCTTGGCTGGATCTTCTCAATGAGAAGAGGAAAAGTGAGGGCGTCAGTCAGGTGTCCCAGAACCTCTTTGAGTTCCTTATGGACCGCTTTGAGAAGGAGTCCTTCTTTGCCAGCCAGGGTCGGAGTGACCCGCAGACCCTCATCGATGAGGATGCTGTGTGCTGCATCTGCATGGATGGAGACGGACAGGACAGCAACGTCATCCTCTTCTGTGACTCATGCAACATTGCCGTGCACCAGGAGTGCTACGGTGTTCCCTACATCCCTGAGGGCCAGTGGCTGTGTCGCCACTGCCTCCAGTGCCCCTCACGGCCCGCTGAGTGTGTGTTCTGCCCCAACAAAGGCGGTGCCCTGAAGAAGACTGATGATGACCGCTGGGGCCACGTGGTGTGTGCCCTGTGGGTGCCAGAAGTGGGCTTCTCCGACACAGTCTTTATCGAGCCCATCGACGGTGTCAGCAATATTCCGCCCGCCCGTTGGAAACTCACCTGCTACCTCTGCAAGGAGAAGGGCGCCGGGGCCTGCATCCAGTGTCACAAGGTTAACTGTTACACAGCCTTCCATGTCAGCTGTGCCCAAAAGGCCGGCCTCCACATGAAAATGGAGCCTGTCAAAGAAGTCACAGATACGGGGTCGCCCACTTTCTCTGTGAAGAAAACAGCCTTCTGCTGTGCTCACACTCCTAAAGGGTGCACCCGGAGACCCCTTGCTATCTACAAGGAAGGCCATGCTAAAAACGGTGTCTGTCACAAGAGGGGTGACAAAAGAGGGATGACGAGGTTAAAAGGGTGGCAGAAGAAGAAGAGCAAGAGAATAGTGGTGGTGCCTGAGGAAGAGGCTCCAGCTGTGCCTGGGCCTAGTATAACCCCCAGCAGTTTCGACACGATCCTCAATCAAGTGTCTGTCCAGAAGAAGAAGGTGTTTGTGGAGCGGGTCCTGAGCTACTGGAtgctgaagagacagtcgaggaacGGCGTGCCACTGATCAGGCGGCTACAGGCCAACCCTCAACCCCCTAAACCAGAGCAGCCGGATCGCAGGGTGGAGGATAATCGAGTGATGAAGGAGCAGCTAAAGGAATGGCACCGCCTACGCCACGACCTGGAGCGAGCTCGCCTACTGCTCGAAATGATCAGGAAGAGGgagaagataaagagagaggagATGAAGCTCCAACAGTCTGTTCTAGAGGTACAGCTCACACCCTTCAACATTCTACTACGAGCTGTCCTGGACCAGCTTCAGGAGAAGGACCAGGCCAAGATCTTTGCCCAGCCTGTCAACGTTAAAGAGGTGCCTGACTACTTGGATCACATCAAGAACCCAATGGACTTCTCCACCATGAGGAAGCGCATTGAGGCCCACGGCTACAAGAGCCTGGTGGAGTTTGAGGCCGACTTCAACCAGATCATATTCAACTGCATGAAGTACAACGCCAAGGACACGTTCTTCCACAAGGCCGGTCTGCGTCTACAAGACCAAGGCGAGGCCATCCTCAGGAAGACTCGTCGGTATGCAGAGCGAATCGGCTTTGACTTTGTCAGCGGGATGCACCTCCCTGAGCCGCCCAAGGTGGAGGCTCTTCCCCCTTTCTCCTGGGACGATGTGGACCGGATACTAAACCCAGCCAACCGCCAGCACATGTCTTTGGAGGAGCAACTTAAAGAGCTGCTGGAGAAGCTGGACCTGAGCAGTGCCATGAAGTCTAGTCCGTCTCGCAGCAAGCGACTGAAGCTGCTCAAAAAGACCATCACAGATGTTCGCAGCGAGATATACCTAAAGACGAGGCACCCCGCTTCCTCTGAACCGAAACCAGCAGATACTGAGGATAAACCGCTGCCTCCCACTGGACACAGCACACAGGAAGAAGGAGGCAAGTCTTTGCCCCCACCAAAACTAGAGCCGTTGAACTCCTTGCCGCCGCTTGTCAACTCAGATAGTCATTCAGAACCTCCCATGCTCAAGCCCATCAAATCCAATGCAGACAAGAGCCAGAAGACCTCCAAGTGCAACGGTGTCAAGACCGCTACCTCTGTACCCCAGGAACCCATCAACGGGCACATCTGTAACCCGCTGTTCCCAGTCAGTGACCTCAGTTTCGTGGCCACCTCTATGCTCGCAGAGCCCTCTGGCACGGGCAACAGGCGGACCAATGTGCTCTTATGCAAGTCCAAGAGTGCTAGCCTGCAGAAGCCCCCAAGGACAGCAGAGCACTTGCCCGGCTCCCCGCCGCTGGGGGCCAAAACCTTCCTCTCTGTTGTCATTCCTCGCCTTGAGACCCTCCTTTTACCCAGGAAGAGGACCCACAGCTCCAGTGGAGACTGTGACGAAGATGAGGAGGAATCGCCCATCAAGCGCCTTGACACAGGACTAGCTAATGGCTTTGTTGTTGAGCCAGAGAGCGAGGCTAGCCCCAGTAGGCCGCTGGAGCCTCGCCGACGCTGTGCCTCTGAGTCCAGCATCTCCTCAAGCGGCAGCGTGCTGTGTAGCACAAGCACGGTCAGAGTGCCAAAAAACGGAAAAGGCAGGCCATCCATGGCACGCAGGAGCACAGTGGACGACAAAAACGCTCTCATCACCTGTATCGAAAATGGGGACTTTACCAAAGCCGCTAAGATTGCAGCAGAAGTTGGCAACGGAAATATTTGGATGCCTGCTAGTGCTGCAACATATGTACTGGAACCCCTTAAACTAGTTTGGGCAAAATGTAGTGGATATCCCTCCTACCCCGCCTTGATCATAGACCACAAGATGCCGAGGGCGGGGTGTCACCACAAcggggtctctctccctctaccccctctggACGTCCTCAGGGTCGGCGAGCAGATGCAGTACAGGTCCGAAGAGAAACTCTTCCTCGTCCACTTCTTCGACAACAAGCGCAGCTGGCAATGGCTTCCTAGAGCCAAGATGGTTCCCTTTGGTATCAATAAGACTGTGGACAAGATCAAACTGATGGAGGGCTGCTCCTCTGGCATCCGTAAAGCAGTGCAGACCGCCTTTCATCGCGCTGTGAGCCACCTGAGCCAGGTCAAGGACAAGCCTAGCAGCAAGCCCTGCAATGTGGACTAAACCTGCTCATGCATCCCCCTCACCTCTAGGTGGAGCCCTTCTTCAACTCTCCTTAGTTTACTTGATATTCCACAGCAGTCCCAGTAttcctctaacacacacaccctctcttcgTGTTTACTGTGTACTGGGGTAGAATCTAAAGCCCTCAAGTAAGTAGCCCTACGGTCTCTTGGTGCAGGTTTCCATTCCACCTCGTCTTGATTATATCAACTGAGCTGCTCATGGGTAAATGGTATGTGTATGACACCACTACACGCATGCTCCCTTTTAATCTATTCCATTCTAAAAACTGTAGCTGGCAACATGTAATATCCACATGAATCAATGAGCTATGCAACTGAACTCAAGCGATTTGGGTTGGCGTGTGCAAAAAACCTTAATACAGAGTCCTAGAACTGACTCACGAAAATCACTGGCCTAACCTGATGAATGTTGAATTTCTGTCCTGTAATATGCTGCACCTTTCACTGCTGCAACTTTCACTTCCATCATGATTCTCACCCTCactctcatttcctctctgcAGTTGCCCTGTATTTAACCCTGTAAATACCTGTACAAGGCGTGACACTAATTTATTCTGTTTTCAGTTATTGGTACTGCGTGTTCACTTTCTTGCTATTTATGCTGTAGGGGTGATTCATGTCAGCACTATGGTGCTTATTAAATATTTGCTGGTGCTACAACCTGTGCAAGTCTTGGCTACAACTGAGACTCATCCAGggcaaaacatatatatatactgtatcgaTTGAACGTTTGTTTTTATTTCGGctactttttttttaatggtttCTTATTAAGTTATTGAAGTTTTATGGACAAGCTTCTCTCTACATTATTGTGGTTTTTAAATACAATAATGTTTTTATGGGAATTagtgtgttttgttgttttgtttgtacaTATTTATAGAAATCTATATAATTGTATACATAAGATGCTTTCAATGTTTAAAACCAGAAAGTGCATCATTCACACAAAACCAAAAATTTGCTGCCCAGATttgattcattttattttttattttttttacagtttttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagagagagagatatgtgaaTAACCTGTAAAAACGTTGTCTTTGTTCACAATGGTTTTGACTGTGTTACAGGGACCTATACCATGACCATAGGTGAATGTGCCTGTACTAATTTATTGTAAAGGAGAAATGTATATGCATTACTTTATATAGAAAGAATTGTAAGAGATGCAATTGTCTCACTAGGAGCCAACTGTGTAAAGGCCATTTTTGCATATTGTTTGTTTTAATCAGAGGCATTAATCTTAAAGGTGGGTGTAATAGAATCCATTACGTTTTATTCAGTTAGGAGGATCTGGGGTAGCAGTGGGTAGATTTGTTTTTTTCAAAATCCATTTTTGTATGGATGTTCTGTAAATAGACTTGATCCTGGTCTTATTCTCTGGGAAAACCACATTATAGCCAATGGGAGTGGATGCTGGCAAAGTCCAGTATGTTTTTATATAAAAAcactgaaaataaaataaaaatgttattgaATCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188772 lncRNA downstream 43772 59300078 ~ 59300387 (-) True G165609
TU188768 lncRNA downstream 48114 59295823 ~ 59296045 (-) True G165605
TU188542 lncRNA downstream 52769 59291001 ~ 59291390 (-) True G165386
TU188486 lncRNA downstream 92028 59251929 ~ 59252131 (-) True G165331
TU188398 lncRNA downstream 158090 59185617 ~ 59186069 (-) True G165245
TU188815 lncRNA upstream 6965 59363459 ~ 59365028 (-) True G165651
TU188877 lncRNA upstream 91576 59448070 ~ 59448337 (-) True G165712
TU188893 lncRNA upstream 108615 59465109 ~ 59465330 (-) True G165728
TU188902 lncRNA upstream 120318 59476812 ~ 59477315 (-) True G165737
TU188909 lncRNA upstream 127233 59483727 ~ 59483943 (-) True G165744
XM_036951888.1 mRNA downstream 954858 58357788 ~ 58389301 (-) False LOC110492691
XM_036951890.1 mRNA downstream 954862 58357788 ~ 58389297 (-) False LOC110492691
XM_036951892.1 mRNA downstream 954862 58357788 ~ 58389297 (-) False LOC110492691
XM_036951841.1 mRNA downstream 1095986 58210911 ~ 58248173 (-) True LOC110492633
XM_021567063.2 mRNA downstream 1108764 58208496 ~ 58235395 (-) False LOC110492633
XM_021567256.2 mRNA upstream 460231 59816725 ~ 59823875 (-) True LOC110492772
XM_021567266.2 mRNA upstream 470130 59826624 ~ 59841614 (-) False LOC110492782
XM_021567276.2 mRNA upstream 516423 59872917 ~ 59885714 (-) True LOC110492793
XM_021567288.2 mRNA upstream 580427 59936921 ~ 59948593 (-) True LOC110492804
XR_005037390.1 mRNA upstream 595498 59951992 ~ 59963140 (-) False LOC110492814
TU187215 other downstream 980565 58362586 ~ 58363594 (-) True LOC110492691
TU187140 other downstream 1169071 58173659 ~ 58175088 (-) True G164037
TU187106 other downstream 1212786 58129409 ~ 58131373 (-) True LOC110492612
TU187105 other downstream 1225938 58111341 ~ 58118221 (-) True G164003
TU186917 other downstream 1554776 57776469 ~ 57789383 (-) True G163839
TU188907 other upstream 125463 59481957 ~ 59482314 (-) True G165742
TU188911 other upstream 130967 59487461 ~ 59487840 (-) True G165746
TU189225 other upstream 471582 59828076 ~ 59830015 (-) True LOC110492782
TU189774 other upstream 563384 59919878 ~ 59920330 (-) True G166541
TU190051 other upstream 1045854 60402348 ~ 60406808 (-) True G166794

Expression Profile