RNA id: XM_036951948.1


Basic Information

Item Value
RNA id XM_036951948.1
length 4055
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110492752
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59402177 ~ 59643249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGCCACCATGCACTCTTTGGGCTAGGCAAACACTCTGAGCATGAATTATATGAATTCGTCCTAAATAGTCCCTGCACACGTTTTCATGTGTGGTCATGGGTTATGGTGATTTGaaacagtcaattgaaataaactgCTCAGTATGTACAGCAACAACTAACAAACATCAGAGAAGCATTAGGTAGCACAGAGTTGGAAAACCAATCACCGTCGTGTGGGAGTACTGGGTGATTCCACGAGACAAGAAACGCGCTCGGGCTTCCTATGGTGTTTTTTCAGCACTATGAGCACAAGCTTGCGCCGCATTGGTGTGGCAGTGAGAGCGCGAAGGACCTGATCTGAGTAACCCGCAGGGTCTTTTGAGCATGTGATGCCAAGGATTGCAGAGAGATCAACACTGTCCAGCCAGTGTGAGAAACTcagcctctcttctctccagctcCCTTATATCACTCAAACTGCACCCCCTTCCCAGTGATGCCAGGAACATGCATCATCAGCTCTTTGAAACCAAGAGGTAAtcatccctaaccctaccctGATTTAGAGAGGGGCACCCATGGTACGCCCCACCCTGTGcacccaccaccacccaccagcTGCCTGCTGCTCCGATCTTCCAGTGCTACACCATCCCTCCCCTGACCCACTATCCCACTCACCCGCACTGCTACCACCATGGCCAGGGAGTccaaacacccctccctctcccgttATTGCTTCCTCTTCCTACTGACTACCAAATGCTACTGGCTGTTGGTCTCTGCCACTCAGAAGGTCTCGGACCCGCAGCTGCCTCTGCAGGAGTACGCCCATTCTATCCGGCTGGACGGTGACATCATGCTGGGTGGCCTATTCCCTGTGCACTCCCGTGGCGAGAGAGGAGTGCCCTGCGGGGAGCTGAAGAAAGAGAAGGGCATTCATAGGCTGGAGGCCATGCTGTTTGCCATTGACCTGATCAACAAGGACCCAGAGCTGCTACCGAACGTGACCCTGGGGGCGCGCATCCTGGACACGTGTTCCAGAGACACCTATGCCCTGGAGCAGTCACTGACCTTCGTTCAGGCACTCATCGAGAGGGATGGCTCAGACGTGCGCTGCGCCAACGGGGACGCACCCATCTTTGCCAAGCCGGATAAGGTGGTGGGGGTCATAGGGGCAGCGGCTAGCTCGGTGTCCATCATGGTGGCCAACATCCTGCGGCTCTTCAAGATCCCTCAGATCAGCTATGCATCCACAGCGCCCGAGCTGAGTGACAACACACGCTACGACTTCTTCTCCCGTGTGGTGCCACCAGACTCCTACCAAGCTCAGGCCATGCTGGACATCGTAACGGCGATGGGCTGGAACTATGTGTCGACCCTGGCCTCAGAGGGGAATTACGGTGAAAGTGGCGTGGAGGCTTTCGTCCAGATCTCCAGAGAGTCTGgtggTGTGTGCATTGCCCAGTCTCTGAAGATCCCCAGGGAGCCCAAGCCGGGGGAGTTTGACAAGCTTATTCTGCGATTGCTTGAGACCTCCAACGCCCGAGCCGTCATCATGTTTGCCAATGAGGACGACATTagGCGTATCCTGGACGCGGCCAAACGCAACAACGAGACTGGTCACTTCCTTTGGGTTGGTTCAGACAGCTGGGGGTCCAAGATCTCCCCTGTGGTCCAGCAGGAGAGAGTGGCAGAGGGGGCCATCACCATCCTCCCCAAGAGAGCCTCCGTGGACGCCTTCGACCGTTACTTCCGGAGTCGCTCCCTCTCCAACAACAGAAGGAACGTGTGGTTCGCGGAATTTTGGGAAGAAAACTTTGCGTGCAAGTTAGGGATGCATGGCAAGCGACCTGGGAGCCCCAAGAAATGCACAGGACTGGAGAAGGTGGGTCGTGACTCAACCTATGAACAGGAGGGGAAGGTACAGTTTGTGATGGACGCGGTTTATGCCATGGCCCACGCCCTACACCGCATGCACCGCGAGCTCTGCTCAGGGAACATAGGCCTGTGCCCACGCATGCACAACATTGACGGCAAGGAACTGCTGACCTTCATCCGGGCAGTAAACTTCAATGGAAGTGCTGGGACTCCTGTCACATTTAATGAGAATGGCGATGCTCCAGGACGCTATGATATCTTTCAGTACCAGATCAACAACAGGTCAACAGCAGAGTACAAGGTCATCGGCCACTGGACCAACCAGCTACACCTAAATATGGATGCCATGCAGTGGACCAGTGGAGACCCCTCTGTGCCCGCCTCTGTGTGCAGCCTGCCCTGCaagatggATGTACATCCAGACAGCCACGCTGACCATCTCCCTCAGCCTGAGCGCCTCCGTCTCTCTGGGGATGCTCTACATGCCCAAGGTCTACATCATCATCTTCCACCCGGAGCAGAATGTTCCCAAGCGCAAGCGCACCTTCAAGGCCATCGTCACCGTCGCTACCATGACCAGCAAGCTGTCCCAGCTGGCCTCCGAGCGACCCAACGGAGAGGTGAAGACAGAAATCTGCGAGGGCATGGATGCCAGTATGCCATCAACCAAAACAAAGTATGTCAGCTACACCAATCATGCCATCTGAAGAGAGAAGCACTGAATAGAGAATTACTGAGGAATTCCACATGCAGACTTGGATGTGTCAGATTCGCCCATGACAGGGCGTTACAACAAGCATGAGACATTGATATTGCTCAGAGTCCAAATAACGACTGAGAGCATGGCAGTCAACATAAATATGTCTGCTCTTTCATGTTCACAGACAGAGCTAATGGGCCTGCTGGAAGCAgacaaaacactaaacaaacaattCAAGAGACTTGACAAAATGAGGGTGGGGAACAGAAGAGGAAAACAAAAGAGAATTTAAATAGAAATTGTTGCGATCAACCATGTTAGTTAGTTTGTTATTCTAATTTTATGTATTTTGTGGTTGTGAAGATTTCTCATTCGTGTCTTACGTCGTCTGAACTACATTGCGAGATGAGTTTGTCTCTGTATCAGCTAACTGAATTGTAGCCTTGAGTTGTGAAATCTGTAAATGCAATGGTTTAAGCATGCACATTTTTATACAAATACTTTATTTATAATAAAGGAATGTTTTGGAAATGTTTAGGATTGTTGGATGAGGTTAAATATGAGAGTGGGATATGATGTATGTGGTTTACCTCAATTTAGATGGAAATGATACCCAATGCATCATCCATAAGGCATAACAGTTATGTGATGGCCTTGACCTGAATTGAGCACACATCCAAAATACACCAGGATGGTAAGTAGGCAAATTATGTTAAGAATGTATGAAGCCTTAAAGCAAACTATGAAAAATATCTAGAGCACCCCAAAAACTCCATGGTCTCAAATCAAAACAAACAATATTGCTGTAGGATTTCCCCTGAAGCAAACTATATACAGTCGTGGCAAAATAATTTGAGTATTACTGTGAACATAATGCAAATGTTTAGTTTTAACATTTTACttaaacctgagaaaaaaaaatgGGGCTGGACTGACTTTTGGactgccagagaatttaatattaatttctctaccgtaaACTGCCTCAGTAGTAATTGGAATTGAATTGAATATTCAATTGCAATTACTACTGCATTGCAACATTTTCTACTTTTGTGTTTCGGATTTCCTTCTCTCTCATATCATTTTTGTTACATTAGGTTTTTGTCCTGTTCAAAATAGCACAAATGAGTGCCAAAAAacagtacagtggcttgcgaaagtattcaccccccttggcatttttcctatttagtTTCCTTACAAAATATAATTTcaggggggtttgtatcatttgatttaaacaacatgcctaccactttgaagatgcaattttgttgttgttgtgtgtaacaaacaagaaataagacaaaaaaatctGAACTTGAGTGTGGATAACTATTCACTCACCCAAAGTCAAAGcaccagctccttcaagttggatgggttccgatGGTGTACAGCAGTCTTTAattcataccacagattctcaattggattgaggtctgggctttgactaggccattccaagacatttaaatgtttcccctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188565 lncRNA upstream 20389 59316180 ~ 59381788 (+) True G165409
TU188598 lncRNA upstream 36550 59364039 ~ 59365627 (+) True G165441
TU188560 lncRNA upstream 91958 59310016 ~ 59310219 (+) True G165404
TU188553 lncRNA upstream 101481 59299739 ~ 59300696 (+) True G165397
TU188551 lncRNA upstream 103040 59298892 ~ 59299137 (+) True G165395
TU189128 lncRNA downstream 156809 59800058 ~ 59800342 (+) True G165946
TU189149 lncRNA downstream 193577 59836826 ~ 59837031 (+) True G165967
TU189153 lncRNA downstream 198166 59841415 ~ 59841623 (+) True G165971
TU189156 lncRNA downstream 199820 59843069 ~ 59843273 (+) True G165974
TU189161 lncRNA downstream 207668 59850917 ~ 59851116 (+) True G165979
XR_005034527.1 mRNA upstream 12074 59387950 ~ 59390103 (+) True LOC118937284
XM_021567187.2 mRNA upstream 368810 58797383 ~ 59033367 (+) False LOC110492721
XM_036951914.1 mRNA upstream 368811 58855670 ~ 59033366 (+) False LOC110492721
XM_021567141.2 mRNA upstream 1079626 58316277 ~ 58322551 (+) True LOC110492681
XM_036951861.1 mRNA upstream 1105431 58262247 ~ 58296746 (+) True LOC110492647
XM_021567236.2 mRNA downstream 130914 59774163 ~ 59781857 (+) False LOC110492759
XM_021567244.2 mRNA downstream 130914 59774163 ~ 59781857 (+) True LOC110492759
XM_036952003.1 mRNA downstream 256881 59900130 ~ 59922723 (+) False LOC110501704
XM_036952009.1 mRNA downstream 256881 59900130 ~ 59922723 (+) False LOC110501704
XM_036952045.1 mRNA downstream 326457 59969706 ~ 59977321 (+) True iqub
TU186698 other upstream 1185794 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 1470186 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 2348535 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 3149579 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 3454932 55946143 ~ 55947245 (+) True G160569
TU189317 other downstream 302459 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 872383 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 1208183 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 1208183 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 1419344 61062593 ~ 61074591 (+) True G167288

Expression Profile