RNA id: XM_021567256.2


Basic Information

Item Value
RNA id XM_021567256.2
length 1607
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC110492772
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59816725 ~ 59823875 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCGTATTACGCACAGAGGAGTCACGATGGACCAGTTCCCCCAGATAAAAAGGGGCGCTCCCCAGCTACTCCCCACCCTTGCCCTCTCCCTTCTGGCGTGTCTTAGTTTCGTCTCCCCCCTACCTACAACGGAGCCCCCACTGTTTGACGGTCATCCGTTTGTGGGTATATGGAATACCCCGACCCCTGCATGCAAGAGGCTGCAGATCCCACTGGACACCTGGTCCTTCAAAGCAGTGACCACGCCTGCTGCTGTTCCCGGTCAGTTCCTCACCCTGTTCTACGTCGACCGCCTGGGCCTGTACCCTCACGTTGACCCCAACAACCATCGCCAGTTCAATGGTGGCATCCCCCAAAAGGGCAACCTGACGGCCCACCTGATTAAGGCCTACGGTGACATCAATCATTACATCCCCTCTGACACGACCCCGGGTCTGGCCGTCATTGACTGGGAAGACTGGCGCCCCCTGTGGGACAGAAACTGGGGGTCCAAGAATATTTACCGTCAACTGTCCATCGCCTACGCTCGAGAGAAGGACCCCTCTTTGTCCCCATCACAAGCAACCACTGAGGCCAAGAAGCAGTTTCAGACTGCAGCCCGCAACTACATGGAGGGAACCATGATGCTAGGTATCAGCCAGCGGCCCAGCCAGCAATGGGGGTTCTATCTGTTCCCCGATTGCTACAACTATGGCTGGGAGAAGCCAGACTACACAGGGCAATGCTCCGACAAGACCAAGAGCCAGAACGACGAGCTTTTGTGGCTTTGGGAGTCCAGCACGGCTCTATACCCTTCAGTCTACCTGCCTGCGTCGCTGAACAACAGCGCCAACGTGGCACTTTTCGTCCGAAACCGCGTTCAGGAGGCAGTGAGGGTGGCAGCTCTGCCCAAACGCCCCTACACTGTGCCCATCTATGTGTACTCATGCCCACTCTACCGTGACCGAAATAAGTTTCTCAGTACGGAGGATCTGATCAGAAGTATTGGAGAAAGTGCAGCATTGGGGGCTTCCGGGTCAGTGCTCTGGGGAGCCAGTGCCGACTATACTGACAAGgcTTCATGTGAAGCATTATCCACATACCTGACATCCACCCTCAACCCATACATCGCTAACGTGACCGCTGCCGCCAAACTCTGTAGTGACGTCCTTTGCCAGGGCAATGGCCGCTGTGTCAGAAAGGACTACAACTCCAATGACTACCTGCACCTGAACCCGGACAACTTCCGCCTCCTAAAGTCCCAGCGAAAGTACGTGGCCATCGGAATACCCTCCTCTGCTGACCTACTCACCTTAGCAGAGAAGTTCACCTGCCAGTGCTACACAGGCAGTAGCTGCTCACCCCAGTTATCACGTCCCACGACCCCAATGGTTATTCAAGTATAGCCTCCCTGGGGGTTCACTCTTAAAAAATCTCACAAATCTGATGAATGCATTCACAGTATGGGTACGTGTATATGATTGAAGCAAATAATCATGGTTCTCATTTTTAGATTAACAGTATTTTTTGGAGAATCCTGCACTATAGGACTGAATCACTAAAGTAAGACATTACATATTTATGTCAGAataaaattcaaaaatattttacaTTGTTGTGAGTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189267 lncRNA downstream 12672 59803847 ~ 59804053 (-) True G166081
TU189266 lncRNA downstream 14713 59801766 ~ 59802012 (-) True G166080
TU189024 lncRNA downstream 169355 59647074 ~ 59647370 (-) True G165847
TU189023 lncRNA downstream 170053 59646458 ~ 59646672 (-) True G165846
TU189022 lncRNA downstream 171068 59645444 ~ 59645657 (-) True G165845
TU189223 lncRNA upstream 3600 59827475 ~ 59827944 (-) False LOC110492782
TU189285 lncRNA upstream 6934 59830809 ~ 59831085 (-) True G166099
TU189291 lncRNA upstream 19450 59843325 ~ 59843603 (-) True G166105
TU189783 lncRNA upstream 108610 59932485 ~ 59998041 (-) True G166550
TU189902 lncRNA upstream 304742 60128617 ~ 60134108 (-) True G166665
XM_036951921.1 mRNA downstream 460230 59344159 ~ 59356495 (-) True LOC110492741
XM_021567214.2 mRNA downstream 460231 59344159 ~ 59356494 (-) False LOC110492741
XM_021567205.2 mRNA downstream 460232 59344159 ~ 59356493 (-) False LOC110492741
XM_036951888.1 mRNA downstream 1427424 58357788 ~ 58389301 (-) False LOC110492691
XM_036951890.1 mRNA downstream 1427428 58357788 ~ 58389297 (-) False LOC110492691
XM_021567266.2 mRNA upstream 2749 59826624 ~ 59841614 (-) False LOC110492782
XM_021567276.2 mRNA upstream 49042 59872917 ~ 59885714 (-) True LOC110492793
XM_021567288.2 mRNA upstream 113046 59936921 ~ 59948593 (-) True LOC110492804
XR_005037390.1 mRNA upstream 128117 59951992 ~ 59963140 (-) False LOC110492814
XR_005037391.1 mRNA upstream 128117 59951992 ~ 59963149 (-) True LOC110492814
TU188911 other downstream 328885 59487461 ~ 59487840 (-) True G165746
TU188907 other downstream 334411 59481957 ~ 59482314 (-) True G165742
TU187215 other downstream 1453131 58362586 ~ 58363594 (-) True LOC110492691
TU187140 other downstream 1641637 58173659 ~ 58175088 (-) True G164037
TU187106 other downstream 1685352 58129409 ~ 58131373 (-) True LOC110492612
TU189225 other upstream 4201 59828076 ~ 59830015 (-) True LOC110492782
TU189774 other upstream 96003 59919878 ~ 59920330 (-) True G166541
TU190051 other upstream 578473 60402348 ~ 60406808 (-) True G166794
TU190135 other upstream 691351 60515226 ~ 60515522 (-) True G166877
TU190177 other upstream 716314 60540189 ~ 60549179 (-) True LOC110492890

Expression Profile