RNA id: XM_021567266.2


Basic Information

Item Value
RNA id XM_021567266.2
length 3022
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110492782
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59826624 ~ 59841614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCACAGGAaactctcgctttccctctcctgctccctctccatcgctctcttcCTTCACTGTATATAAGTGTGGTGGGTGGATTGTGTGTCAGACAGAGTAAAGGAATGCCAGAGTGtcggacagatggagaggggcACAATCCCTGTGCCTCCCCCTGGATTGGCTGATGGTGATGGTCGCCATACTGAATCTACAGATGATTGACGATCCCTTCAGTTGAACCAAGCCCCAGGATGATAATGTTGCCCGTCAGCGGTGGCCACCATCACCACGTCGTGCCTGTGGCTTGTGCCCTCACCTGCTCCTGGCTCCTGCTACTTTTTCATGCCGTCTTTGGCCAGAAGCCCGCCAAGCTGCCCCTGGTGGGCCGCAAGCCCTTCATTGCTGCCTGGAATGCACCGCTGGACCTGTGCACTGTCAAGTACAATGTCCACACCAACCTGGAGCAACTCTTCCACATCAGTGGCAGCCCGCGGGCCATCCGCACTGGCCAGAATGTCACCATTTTCTATGCCAATCGGCTGGGCCTCTACCCTTTTTACACGGACCAGGGCGTCCCCATAAATGGAGGCCTCCCCCAGAACTGCAGCCTGGAGGCCCACCTCTTCAAGACGTACAAGGACATCGTTCATTTTATCCCCTCTGAGGACTTTGCTGGACTGGCAGTCATCGACTGGGAGTATTGGCGGCCTCAGTGGAACCGCAACTGGCACAAGAAGGACATCTACCGATGCAAGTCCCGGGAGATGATCGCACAGGCCTATGTCAACGTGACTCCATCACAAATCGAGGTGCTGGCACGAAAACGCTTTGAGAGGAGTGCCCAGGCATTCATGCAGAGGACAGTCCAGCTAGGGACGCGCCTTCGCCCCAGTGGACTCTGGGGATTCTACCTCTACCCAGACTGCCACAACTACAACCTGCATGAGCACAACTACACAGGCTCCTGCCCCCTGCTAGAGAGCCTGCGTAATGACGAGCTGCTCTGGTTGTGGAATAGCAGCACAGCATTGTTCCCCTCAGTGGCTATCAGGAAGAGTCAAACAGATAGTGTCAGCAATCTCCATTTCTCCCAGTTCAGGGTGCTGGAGTCTCTGAGGATAGCTGGGCTTACCTCGCACGACTTTGAGCTGCCCACATTTGTGTACACACGCCTAGGGTACAGGGATGAGGCTATGGCCTTCCTCACCACGACAGACTTGATCCACACCATTGGTGAGAGTGCTGCTTTGGGGGCTGCAGGTTTTGTGATCTGGGGAGACCTCAACCTCACTTCATCCAAACACAACTGCACAAAGGTAAAGTCCTTCCTCAAACACCGCCTGGGTCAGTACATCACCAATGTGACACGGGCCGCAGAGGTCTGCAGTGACTTCCTGTGCCAGAGCAACGGCCGCTGTGTCCGCAGGGACCTCCACGCCCGGTACTACCTCCACCTGAGCGGAGACAGCTACCACATTCAGCCCTCGGGGGACGGGGACTTTGCGGTCACGGGCAAGCACTCGCTGCGTGAGCTCCAACTACTGGCCAAGAGATTCCACTGTCACTGCTATGAGGGACACGCCGGGGAGAAGTGTGATAGCCTGAACAAGGTGGtggcagaagaggaggaagaggaggggggagagttggaggaggggggagaggtggaggatggggagaAGGAGCAGAGGGAAAGTGCCGCTCCACAAACTGGGAAGAGCTTTAGCTTGGTGGTGTTGCTCCTTCTATTGAATGTCTCCTTTGTGTGACTGTGGTATGATAATAGCACTTTAAGTGTCTTGTGTTGTTTGGCGTAGGGAAGACAGAGCTTGAAGTCACTTCCATGGGAACTGCTATTACGTAATGCTGTGCCGTCGTCCTACAGGGTCCTGTATTATAGTGGGTAAAGCTTTACTTGAAGGGTACCTGCATAATGACTACATGACACATCCATAACTCATACATACTTCATTTGTAAAGTCTGATTATATATAACAATGGGACCAATATAAACTCTGGCCGAGTCTTTTGTCATTTTGCATTTAAGCATGCGTTGCCAGCAACAGCATTTATTTACTGAAAGTGAGCTAACTTCCTAACTTGTCACCTCACCGCTATCACTACTGGTACCATTGTAAGCACTGACAATGAAAAGGTGTCTGTGAGTCTTGCTCCAGTCTTCCCTAATACTGTGTAGTTTCATATAGCAATAAGCTTGAcatttgagtttattttttaatGGTAAGGCTGTCATTGAATGATAATTCATTTCAATAGATGATCTAATTTGGCTATTAAAGGCACAATAAAGTTGAAAAATTCCTAGACACTGCGCAATTTGAAAAAGCCTTGTGTATTTTTTTATCGATCATGTTAGGAACCACATCACATTTGGGCCACAAGACCTTCCACATGTGTAATAGGTGACATATAAGAATGTTGTGCAACATCGGTGCTATGGAGGTTGACAGTTGTTTCTTTTCCACACCTTTCTGCAAACATTGGTATTCAAGCAAATTCATATTCAGACAGAACATCTCATCGATTCACCGTTCAAAAAGAATCCCAAACCTTACTTATCACTCTGACATTGAAGCTTGAAGTGCAGATAGAAAGTGGGTAACCAGAAATTGAAGAGACAAGGTATTTAATCTCATCACCCTTTGCCTTTCCTCCTTAGTACTTTGTCAATACTAATTAGGACACTTAGAagctattttttttttgcaacatCAAATTCAGTGTCTTCTACCCAGGTTACTCTTGAAATGTGTGTTGAAAACTGTGTAAAATGATTTATGTACAATTTTCATACTAAACTGGAATGTAAAACCATTATATGTCACATATGGACAATGTTTTATTTGAATGGAAAGAATAGAAATGTTTAAAATCTTGCAAGTTttgttcatgttgttgtttaCCCAATGCACGATGGCACTGTACAATGTACTCCAAATGTTCTTTCCAACGGCTAGTCTTATAACTGATGTAGCAGCAATATAAGGCAAGTTTCTTTGTGGATGCTTTACTTTt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189267 lncRNA downstream 22571 59803847 ~ 59804053 (-) True G166081
TU189266 lncRNA downstream 24612 59801766 ~ 59802012 (-) True G166080
TU189024 lncRNA downstream 179254 59647074 ~ 59647370 (-) True G165847
TU189023 lncRNA downstream 179952 59646458 ~ 59646672 (-) True G165846
TU189022 lncRNA downstream 180967 59645444 ~ 59645657 (-) True G165845
TU189291 lncRNA upstream 1711 59843325 ~ 59843603 (-) True G166105
TU189783 lncRNA upstream 90871 59932485 ~ 59998041 (-) True G166550
TU189902 lncRNA upstream 287003 60128617 ~ 60134108 (-) True G166665
TU189906 lncRNA upstream 305927 60147541 ~ 60156968 (-) True G166669
TU189914 lncRNA upstream 317841 60159455 ~ 60181300 (-) True G166677
XM_021567256.2 mRNA downstream 2749 59816725 ~ 59823875 (-) True LOC110492772
XM_036951921.1 mRNA downstream 470129 59344159 ~ 59356495 (-) True LOC110492741
XM_021567214.2 mRNA downstream 470130 59344159 ~ 59356494 (-) False LOC110492741
XM_021567205.2 mRNA downstream 470131 59344159 ~ 59356493 (-) False LOC110492741
XM_036951888.1 mRNA downstream 1437323 58357788 ~ 58389301 (-) False LOC110492691
XM_021567276.2 mRNA upstream 31303 59872917 ~ 59885714 (-) True LOC110492793
XM_021567288.2 mRNA upstream 95307 59936921 ~ 59948593 (-) True LOC110492804
XR_005037390.1 mRNA upstream 110378 59951992 ~ 59963140 (-) False LOC110492814
XR_005037391.1 mRNA upstream 110378 59951992 ~ 59963149 (-) True LOC110492814
XM_036952066.1 mRNA upstream 451398 60293012 ~ 60372642 (-) False ptprz1a
TU188911 other downstream 338784 59487461 ~ 59487840 (-) True G165746
TU188907 other downstream 344310 59481957 ~ 59482314 (-) True G165742
TU187215 other downstream 1463030 58362586 ~ 58363594 (-) True LOC110492691
TU187140 other downstream 1651536 58173659 ~ 58175088 (-) True G164037
TU187106 other downstream 1695251 58129409 ~ 58131373 (-) True LOC110492612
TU189774 other upstream 78264 59919878 ~ 59920330 (-) True G166541
TU190051 other upstream 560734 60402348 ~ 60406808 (-) True G166794
TU190135 other upstream 673612 60515226 ~ 60515522 (-) True G166877
TU190177 other upstream 698575 60540189 ~ 60549179 (-) True LOC110492890
TU191049 other upstream 837109 60678723 ~ 60679041 (-) True G167723

Expression Profile