RNA id: XM_036952009.1


Basic Information

Item Value
RNA id XM_036952009.1
length 3933
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110501704
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59900130 ~ 59922883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCAGTATACTGCATTCATGTTACAAAATCCACTGGGAAATAGGGCTAGACCATTCCATAGTTCGGGATATTTTGGCATCCTCGTTATATTCCAACATCAGAACATTTAAAGACGACAGGCAACATCTTTTTTAAATGGAAATGAATTTCGTTCGGAAAGCCCTGCCCTTCCATTGAATAGTATTTGTATATTTCTCCATGACCCCTATCCTCATTGGAATGGTTGTTCCTTTACACTGCCATGTTGGATGGATGTATCGATGTTGCAGCTGGAGTTCCGAATGAAAGTTTAGAATTTGCATTCTGCAAAGATTGGGGTTCCCACCGTTTAGTCATGGAGGTTGTTATCCAACAACCAGGATCCTGAAATATTTCATTTTGCAGTCCTCTACCTTAGAAACAACGTCATGAGATGATCCGGTTGCAGGCCATGGCGACCAAAGGCTGCACCAATTTGATGTAATGTTCAAGAGTAAAACAGTTAATTTTGTTTATTGAGAAGTTATTTACGAACATGAATAGCCATTCTCAGCAGCGGCGGGTTGGAAATATTGGCTCCATACTCCTCACCCCGCAAGAGAACGAATGCCTATTCAACTACCTGGGAAGGAAATGCAATACCCTGTGTTCAGCGGTGGTCCAGGTGTATGGGGCAGACAGGAGCTCATCCTGGATGAAGAGGTGCTGCGGAGTGGCCTGTCTGATCAAGGATAACCCTCTGAGGTCCTACTTCATCAGGGTCTTTGACATCAAGGAAGGGAAAACCATGTttgaacaggagctctacaataacTTCTCAATCAACAGCTCTAGGTCGTATTTCATTTCATTCGCAGGAGATAACTGCCAGGTAGGCCTGAACTTCGCTAGCGAGGAAGAGGCCAAGCGATTTAGAGCTGCACTTAACGAGCTACTCGGCAGACGCCAACGTAAAACGGGCCCGGCTCTCCCTATGGCCACAGTGGACATCAAGAACCCAGAGATTAACAATGTGCGCTTCCACAACTCTCAACAGCAGCTTCCCCAGCCACACCACATCAACAACATGCTGCACAGCAGCCTCAGCAAGAAGGAGAAGAAAGTCAAGTGCAAGAGGAAGAAGCTCACCAAGGCAGACATAGGCACCCCCAGCAACTTCCAgCACATCGGCCATGTGGGCTGGGACCCAAACACAGGCTTCGATTTGAATAACCTGGACCCAGAGCTGAAGAACCTGTTTGACATGTGTGGCATCTCAGAGGCACAACTCAAAGACAAGGAGACCTCCAAGGTCATCTACGACTTCATCGAAAAGAAAGGAGGGGTGGAGGCCGTCAAGAACGAGCTCCGTAGGCAAGccccaccaccccctccctctcgGGGAGGCCCACCTCCCCCTACCCCGCCCCACAGCTCGGGCCCagctcccccaccaccaccattgcGAGGTGGCCGGGGTGCCCCGCCACCTCCACCCTCTCGGGCCCCCACCTCGGcccctcccccaccaccaccatccagGCCTGGTGCCCTAGGaaccccccctccacccccgcCCCCCACCAGAGGGGGCCACCaccagccaccaccaccacctcctgcACCCTTGCATGCCAACACAGCACCCCAGgccccaccaccacctcccccaccagcaccaccaccctcCGGTTGTGGagcccctccaccacctcctccaccacccccacCTGGACCCCCGCCCCCTCCAGAGTTGGACTGTGGTGTGCCGTTGTCCCGCTCACCCCAGGGCACGGGGGGTAAGTCGGCCCTGCTGGAGCAGATCCGTGGGGGCACCCAGCTGAAGAAGGTGGAGGCACCGGTCTCCAAACCACCGGCCACCACTGTGGGGCGCGATGCGCTGCTCGACCAGATACGGCAGGGCATCCAGCTCAAAACTGTACCAGACGGCCCAGACTCTGGCTCCCCTACACCAGCACCCTCGGCAGGCATAGTGGGGGCACTTATGGAAGTAATGCAGAAGAGGAGCAAAGCCATCCACTCCTCAGatgaagatgatgatgatgacgaagaGGATTTTGAAGATGATGACGAATGGGATGACTAGTTaagtctctcctccccctccacctgaGCACAACTGACACTAAACTGATCCTAAAATCTTCCAAAACCTGACTAAAATTGTAATGTAAATGTTCCATGAATTTGGTGTATATTTATTGTTGCCTTTTTTATTAATCTGTGCAATACCTTGTTCATTTAATCTGTAAAGTTTTTTTTCCACATACCCTCTGTAGAGTCTCTGTGAACACTTTCCTGGAACTCTGTCAAAGAACGCTCGCATCACCGTTAAAAGCATGACATCAATTATATAGTCTGTTataagggctcccgagtggcgcagcggtctaaggcattgcatctcagtgcttgaggcgtcactacagtccctggttcgattccaggctgtatcacaaccggccgtgattgggagtcccatagggcggcacacaattggcccagcgtcgttagggtttggccgggataggccgccattgtaaatgagaatttgttcttaactgacttgcctagttaaataaatagaaAAGTCATAACTGTTAATGGTAATAAGCTGAGATGCTTAGGCTGACTACCGCTGTATATGACCCTACGCTGCAAGATTGCTTGCAGCTAATACAATGTATTATTACCACCAACGACACCTGATGGATGGTTCAGGATGGTGCAATGTCACAGAACTTCCAGATAGAAACACATTTTGTAATATTGATATGATTGTCTGTCCTCAAGAATAGAGTCTTATACATTTATCAGCTCTTTACATTACATTTGTCTCCAACGTTCTGAACATTTAGCCCGAAGGAGTAACACTGTACATTGCTGCTATGTTATGCTTATGACAGCCTAAAGACGCTCTATAACAGCAGGTTCAAGCAGTACGGTATCTGCTGGATTAACCATGTGCAATTTTATTTGGGATATATTTCATTGGTGCGTTACTATTAAATGTTACTGTATGTTCCCGGTGAAGAAAGGGAGATGATAAACAATCGGACGGGATCCTCATATTGTTGGTTGACGCAAGATAACACTATTTTCCtaccctactttttttttttgtaccttttTGATTTTCTTAAAGAGATCCTAGTTTAGCAAAGTAATTTTGTTCATATGGAGTCCACTTATTAGAATTGTAAGccacaattgactcaaatgttttCAATGCTAGTATGTTCACAGCTGTTGTCTTTGCACAATTTCAAAATTGAATTTATTATAAGAGTAACAGTGCGGTGTCATAGTTGTGTTCCATCGATGTGCTTATTCAGTGACGGGGAAGACAAAGATTCCCATGGGTAGGATCAGTGTATGCTTTTTGCCAGTCATTGACTCATGGAAGCTCTTAAAGCAGCTGCTGCGTCAAGGAACTTTTTATTGTAATCCACTCATGATTGACACTACGAAAGTGTTCCGCATTACATTTcactacaaaaaaaatgtataactaaTACAGAATCACACAAATAGGCTCATATGAATCATTTAGGTTTTGTGCTGCGCTCGTTTCTTTTCTGTCACTTAGTGTACCTGTTACGATTCCCAAACGTATTATTCTCTCCTTCCTGCTGAAATGAAAATAATGGGGGTTTTTTGCAGGTCAGTTTTCATATGTACCGGCCAATCTAGAAATGTCTtccctttttttttgtttttacaatcCATTACTTTTATGGGATGAATCTCTAAATACCTCCAATACAAAAGTTAATACTGAACCAAAATTGGCATTTGCATGAAGCGTCTACAAGGTTTTGGTTTGACTCTCCTGAAAAGTTTTGAGATGGTAATGAAGCTCATCCTAAACCAAGGTGATTGCTGCGTTTTTAGAAACCTTCAAATGGGTTGGGAAAAGCGATGGAAATAAATTGTATACTTAGTTTTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189308 lncRNA upstream 27309 59872367 ~ 59872821 (+) True G166122
TU189307 lncRNA upstream 29032 59870810 ~ 59871098 (+) True G166121
TU189306 lncRNA upstream 29660 59869996 ~ 59870470 (+) True G166120
TU189305 lncRNA upstream 31953 59867904 ~ 59868177 (+) True G166119
TU189163 lncRNA upstream 48001 59851921 ~ 59852129 (+) True G165981
TU189453 lncRNA downstream 144582 60067305 ~ 60127600 (+) True G166259
TU189566 lncRNA downstream 338855 60261578 ~ 60261804 (+) True G166370
TU189562 lncRNA downstream 362670 60285393 ~ 60288852 (+) True LOC110501735
TU189591 lncRNA downstream 373028 60295751 ~ 60296886 (+) True G166381
TU189647 lncRNA downstream 457051 60379774 ~ 60380051 (+) True G166431
XM_021567236.2 mRNA upstream 118273 59774163 ~ 59781857 (+) False LOC110492759
XM_021567244.2 mRNA upstream 118273 59774163 ~ 59781857 (+) True LOC110492759
XM_021567226.2 mRNA upstream 256881 59402177 ~ 59643249 (+) False LOC110492752
XM_036952045.1 mRNA downstream 46983 59969706 ~ 59977321 (+) True iqub
XM_036952033.1 mRNA downstream 63342 59986065 ~ 60251097 (+) False LOC110501720
XM_036952031.1 mRNA downstream 63346 59986069 ~ 60251097 (+) True LOC110501720
XM_021567308.2 mRNA downstream 339976 60262699 ~ 60267392 (+) True LOC110492825
LOC110501735 mRNA downstream 351661 60274384 ~ 60287624 (+) False LOC110501735
TU186698 other upstream 1683747 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 1968139 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 2846488 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 3647532 56245044 ~ 56252598 (+) True G161687
TU183214 other upstream 3952885 55946143 ~ 55947245 (+) True G160569
TU189317 other downstream 22985 59945708 ~ 59953165 (+) True G166131
TU190136 other downstream 592909 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 928709 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 928709 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 1139870 61062593 ~ 61074591 (+) True G167288

Expression Profile