RNA id: LOC110501735


Basic Information

Item Value
RNA id LOC110501735
length 2366
RNA type mRNA
GC content 0.43
exon number 17
gene id LOC110501735
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60274384 ~ 60288852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCCTGGCGCCCCCTGGAGGAGAATTTAGCAAAGCCGTACAGGCTCCAAGATCGGTGTCACATGGTGAACATTACAATTTCCATCTCGGATTTCAGACATGACCAGAGTCATCAACACCACTTGATAAAGAAAAGCGATGGTGTTTACGACCCCATGGAGTATCACCCGGAAAGTACACATCACACTTCAGAACCAGCGTTGCGTTTTATGGTTGCGCCATCACTTGCTTAATCAACGgttgatttgatttgatctactaGGACCCCCAGACGCCACGGCTCCTGAGGCGGCTGGGCGCCCAGAGGCTCCTGAGGCACGTCAAGCCCTCCGTCACTTCTACCGAGGGATGGCCAGAGCTTCTCCACAAGCTCCTTGCGATTTGTGACATATCTGCTAACATTGTGGGCGCTATTGAGTTCATGACTGAGTGCACCACCATCGATAAGCCTTTCTGGATGTATGATGCGGACCAGCACATAGACCACGACAGTGTGGAGGGCACAGGTATCCTCGTGTTGTATTGATAACCTTCCTGCCCAGCTCCCCATTGAAGCCACTGAATATTTCGGTGACCGCCTCTTTCCCTACATTTGGGAGATGCTGCCCTCGGATGCCACCATGCCCGTTGAAGAAGAGGACTTCTCACCTCAAGTCAGAGATagaaactctataGCTCTCtgggtgaccatcggTATGCTGCCGTATGGGTATCACCCAGTGATCGCCAAGCACTGCATCAACAAGAAGGTGAACATGGTGACTGCCAGCTACCCGAGTCAAGCCATGAAGGACCTTCAACAGAGTGCTGAGGAAGCTGGCATCACCATAGTGAATGGGCCTGGACCCTGGCATCGACCACATGCTGGCTTTGGAGTGCATCGACCAAGCCAAGGCGGACGGCTGCACTattgAGTCATACAGCTCATTCTGTGGTGGACTCCCTGCACTAGAGTGCTCAGACAATCCTCTGCACTACAAATTCAGCTGGAGTCCTTTATGGAGTCCTCCTCAATACCATCAGCCCTGCTATCTTCCTCAAAGACAACAAGGTGGCGAGCATCCTAGTGGAAGGAACTCTGATGGAGTCTACGTCTCCCATGGACTTCATGCCTGGCTTCCACCTGGAGGGTTTCCCCAACCGCGAGAGCAATACAGCCGAGCAATACGGCATCGAGCCGGCCCACACACTCATCAGAGGACCACTCCGCTTCAAGGGTTTCTCCAAGTCCATGAGTGGCTTTGTGTAGCTGGGTCTGATCAACACTGACCCCTCAAtgctctcaAGCTACAATGGAGATTTGACTGACAAgattgaacaaaaacaacaaaaaatccctGTGCAACAGAAAGAGCTGCTGAGTATACAGATGGGCTTGTCCCTGTCTTTCTCTAACCGTGCATTTGAGGGAGCGGTCGACGACATCATTGGCCAAGACGACTTCAAGATGGAGTGGTTCGGGATGCTGAGTAAGGAGGTCGTCCCTCATGCAGACACCCTGCTTCACTGGCTAAGCATTTAGAGGCCCTCCTTTGATAAAGGCGAGCGGGACATGATCATCATGAGGAATGACGTGGGCCTGCGCCACTCCACAGGCGAGCTTGAGACCAAGCACATCAGCCTGGTGGTCTACAGAGACCCCAACGGCTACTCTGCCATAGTAAAAGTGAAGTGAAAACTGCCTTTCAATCTGCAGAAGAAATCTGTATGAAGGGACTGGTGGTGCCAATGACCAAGGACATCTATGGAGTGGCTCAGAAGAGACTGCAGGAGGAGGGCTTACAATTCACTTCAAAAGCACCATCCAAGAGTAGTAACTCACGAATAATCAGCTGCGTCTCAAATAGTGTATATTGATTTCCTTTCCTGGTGTCCTCTCCATCTACACGGATCCAAAAAAGACCCCACACATGAAAAAATACAATTCTATTCAATTCAGTTAAATTATTTCAGAAGAGTGCAGATAAAGAAAAGGAGATTAAGAAAAAAAGCTAGTTTAAACAATTGAGAAATATTTGTAGATTCAACGCCAAGACAGATGGGAAATACAGCCAATCATTGGCTGTCTACCAAGGCCCAGAGAAATCATCTCCATAGTCCCAAGTTACTTCCTCTGTTCATCTCCATGCCTTCATCTGTGCTCATCTGAAAaggcgagagagtgagagatgcaCCCTGACTTTCTGCTTGTTTCAAAGGCATTTCCTCACAGCCTTGTCTTACCTCAACCAATTTATTGTTTCAACACGTGGCGAATATAACAGTTACATTGCAGGTGAACAGTTTCCAAGCAACTTCTTTAAATAAGGCTGTACAATTCATGACATGGAGAACCACAAAACTTGCTGAGTGTCGTTTATAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189566 lncRNA upstream 12580 60261578 ~ 60261804 (+) True G166370
TU189453 lncRNA upstream 146784 60067305 ~ 60127600 (+) True G166259
TU189333 lncRNA upstream 351501 59920128 ~ 59922883 (+) True LOC110501704
TU189308 lncRNA upstream 401563 59872367 ~ 59872821 (+) True G166122
TU189307 lncRNA upstream 403286 59870810 ~ 59871098 (+) True G166121
TU189591 lncRNA downstream 8127 60295751 ~ 60296886 (+) True G166381
TU189647 lncRNA downstream 92150 60379774 ~ 60380051 (+) True G166431
TU189649 lncRNA downstream 95272 60382896 ~ 60383104 (+) True G166433
TU189652 lncRNA downstream 107669 60395293 ~ 60395551 (+) True G166436
TU189653 lncRNA downstream 108010 60395634 ~ 60395870 (+) True G166437
XM_021567308.2 mRNA upstream 6992 60262699 ~ 60267392 (+) True LOC110492825
XM_036952033.1 mRNA upstream 23287 59986065 ~ 60251097 (+) False LOC110501720
XM_036952031.1 mRNA upstream 23287 59986069 ~ 60251097 (+) True LOC110501720
XM_036952045.1 mRNA upstream 297063 59969706 ~ 59977321 (+) True iqub
XM_036952003.1 mRNA upstream 351661 59900130 ~ 59922723 (+) False LOC110501704
XM_021567324.2 mRNA downstream 111252 60398876 ~ 60406820 (+) True LOC110492846
XM_036934029.1 mRNA downstream 340314 60627938 ~ 60639516 (+) True syt8
XM_021567377.2 mRNA downstream 366977 60654601 ~ 60666601 (+) True LOC110492948
XM_021567375.2 mRNA downstream 395356 60682980 ~ 60695886 (+) False LOC110492922
XM_021567376.2 mRNA downstream 395394 60683018 ~ 60695886 (+) True LOC110492922
TU189317 other upstream 321219 59945708 ~ 59953165 (+) True G166131
TU186698 other upstream 2058001 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 2342393 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 3220742 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 4021786 56245044 ~ 56252598 (+) True G161687
TU190136 other downstream 228008 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 563808 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 563808 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 774969 61062593 ~ 61074591 (+) True G167288
TU190618 other downstream 944572 61232196 ~ 61232545 (+) True G167325

Expression Profile