RNA id: TU189562


Basic Information

Item Value
RNA id TU189562
length 1982
lncRNA type sense_over
GC content 0.36
exon number 4
gene id LOC110501735
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60274384 ~ 60288852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcttcagcaaagatggctgacaaaactaCGTggatggaagcaaatGTTCGGGATGCTGAGTAAGGAGGTCGTCCCTCATGCAGACACCCTGCTTCACTGGCTAAGCATTTAGAGGCCCTCCTTTGATAAAGGCGAGCGGGACATGATCATCATGAGGAATGACGTGGGCCTGCGCCACTCCACAGGCGAGCTTGAGACCAAGCACATCAGCCTGGTGGTCTACAGAGACCCCAACGGCTACTCTGCCATAGTAAAAGTGAAGTGAAAACTGCCTTTCAATCTGCAGAAGAAATCTGTATGAAGGGACTGGTGGTGCCAATGACCAAGGACATCTATGGAGTGGCTCAGAAGAGACTGCAGGAGGAGGGCTTACAATTCACTTCAAAAGCACCATCCAAGAGTAGTAACTCACGAATAATCAGCTGCGTCTCAAATAGTGTATATTGATTTCCTTTCCTGGTGTCCTCTCCATCTACACGGATCCAAAAAAGACCCCACACATGAAAAAATACAATTCTATTCAATTCAGTTAAATTATTTCAGAAGAGTGCAGATAAAGAAAAGGAGATTAAGAAAAAAAGCTAGTTTAAACAATTGAGAAATATTTGTAGATTCAACGCCAAGACAGATGGGAAATACAGCCAATCATTGGCTGTCTACCAAGGCCCAGAGAAATCATCTCCATAGTCCCAAGTTACTTCCTCTGTTCATCTCCATGCCTTCATCTGTGCTCATCTGAAAaggcgagagagtgagagatgcaCCCTGACTTTCTGCTTGTTTCAAAGGCATTTCCTCACAGCCTTGTCTTACCTCAACCAATTTATTGTTTCAACACGTGGCGAATATAACAGTTACATTGCAGGTGAACAGTTTCCAAGCAACTTCTTTAAACatatgcttcccacagttgtgccaaaTTGACtgaatgtcctttgagtggtggaccattcttgatacacacagggaactgttgaggctgaaaaacccagcagcgttgcagttcttgacacaaaccaaccagtgcgcctggcacctactaccatcccACGTTCAAAGACactgaaatattttgtcttgcctattctccctctgaatggcacacagacacaatccatgtctcaaggcttaatttTTTAACCTACTgtatctcctcccctttatctacactgaagtggatttaataagtgacatcagtaagggatcatagcttacatcttgattcacctggtcagtctgtcatggaaagagcagccgtccttaaagttttgtacactcagtgtatatttgtaTTTTAAAACTGCTCAGAGATTATAATGTGGCAtagagtacagttgaagtcagaagtttacaaacacctttgccaaagacatttaaactacatttttcacaattcctgacatttagtcctagtaaaaataccctgttttaggtcagttaggatcaccactttattttcagaatgtgaactgtcagaataatagtagagagaatgatttctttcagatttgatttctttcatcacattcccagtgggtcagaagtttacatacactcaattcgtatttggtagtattgcatttaaatggtttaacttgggtcaaacgtttcgggtagccttccacaagcttcccacaataagttgggtaaattttggcccattcctcctgaccgagctggtgtaactgagtcaggtttgtaggcctccttgctcgctcactgtttcagttctgcccacacattttcgatAAGATTtaatgtgatggccactccaataccttgactttgttgtccttaagccattttgccacagctttggaagtatgctttgggtcgtccatttggaagacccatttgcgaccaagctttaacttcctgactggtatcttgatgttgcttcaatataggggcggtagggtagcctagtggttagagtgttggactagtaaccggaaggttgcaagttcaaatccccgagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189566 lncRNA upstream 23589 60261578 ~ 60261804 (+) True G166370
TU189453 lncRNA upstream 157793 60067305 ~ 60127600 (+) True G166259
TU189333 lncRNA upstream 362510 59920128 ~ 59922883 (+) True LOC110501704
TU189308 lncRNA upstream 412572 59872367 ~ 59872821 (+) True G166122
TU189307 lncRNA upstream 414295 59870810 ~ 59871098 (+) True G166121
TU189591 lncRNA downstream 6899 60295751 ~ 60296886 (+) True G166381
TU189647 lncRNA downstream 90922 60379774 ~ 60380051 (+) True G166431
TU189649 lncRNA downstream 94044 60382896 ~ 60383104 (+) True G166433
TU189652 lncRNA downstream 106441 60395293 ~ 60395551 (+) True G166436
TU189653 lncRNA downstream 106782 60395634 ~ 60395870 (+) True G166437
XM_021567308.2 mRNA upstream 18001 60262699 ~ 60267392 (+) True LOC110492825
XM_036952033.1 mRNA upstream 34296 59986065 ~ 60251097 (+) False LOC110501720
XM_036952031.1 mRNA upstream 34296 59986069 ~ 60251097 (+) True LOC110501720
XM_036952045.1 mRNA upstream 308072 59969706 ~ 59977321 (+) True iqub
XM_036952003.1 mRNA upstream 362670 59900130 ~ 59922723 (+) False LOC110501704
XM_021567324.2 mRNA downstream 110024 60398876 ~ 60406820 (+) True LOC110492846
XM_036934029.1 mRNA downstream 339086 60627938 ~ 60639516 (+) True syt8
XM_021567377.2 mRNA downstream 365749 60654601 ~ 60666601 (+) True LOC110492948
XM_021567375.2 mRNA downstream 394128 60682980 ~ 60695886 (+) False LOC110492922
XM_021567376.2 mRNA downstream 394166 60683018 ~ 60695886 (+) True LOC110492922
TU189317 other upstream 332228 59945708 ~ 59953165 (+) True G166131
TU186698 other upstream 2069010 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 2353402 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 3231751 57048314 ~ 57053642 (+) True G162130
TU184425 other upstream 4032795 56245044 ~ 56252598 (+) True G161687
TU190136 other downstream 226780 60515632 ~ 60515880 (+) True G166878
TU190389 other downstream 562580 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 562580 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 773741 61062593 ~ 61074591 (+) True G167288
TU190618 other downstream 943344 61232196 ~ 61232545 (+) True G167325

Expression Profile