RNA id: XM_036952066.1


Basic Information

Item Value
RNA id XM_036952066.1
length 6615
RNA type mRNA
GC content 0.54
exon number 30
gene id ptprz1a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60293012 ~ 60372642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAAATAGAGCTCGTGCATTATGGTCTGTGGGAGGCGCACGCTTCTCATACACTTTCCCTCCTCGCGCTCACCGTTCATCTCCGAGTAGGAGACGAACAACCTCACCGGAGATACCGAAAAGAAAGGAGTGAGGATACACCGGGACCGGACAACACAACTCCCAGCATGAAACAAATGTGAAACCGTCACGGGACTATCTTTCCCAAGAAGCACACATTCGATTTTTTATTGTCTTCTTCGAGATTTGTGAGGTTGGTGAAATATGGAAACGGCTGTTTCAAGAGGCTTATTGCTCGCTCAGCTCTTGATCGTCTGTCAATTAGCTGAACTGGTGCAAGGATACGGATACCGGGCCCAGCGCAAATTCTCAGAAGACATCGACTGGTCCTATGCGGGGACTCTCAACCAAAACAACTGGGCCAAGAAGTACCCATCATGTAACAATGCCAGACAGTCGCCCATCAACATCGAGGAGGAGCTGACACAGGTCAAAGTTCAGTTCCAAAAGCTGAAGTTCGAGGGCTGGGAGGAAGCGATGTCTGATGGGACCACCATCAAGAATGACGGCAAGACAGTGGCGGTGAACCCAGAGGGGGACTTCTATGTGAGTGGAGGGGGACTGAGGGGCAGGTTTAAGGTGGGAAGAATCACCTTCCACTGGGGACGCTGCAACGCCTCCTCAGAGGGCTCCGAACACAGCCTCAACGGGGTGAAGTACCCCCTTGAGATGCAGATCTACTGTTATGAAGCGCATCGCTTTGAGTCCTTAGACTACGCCATCAAGGACGGGGGCAGGATCACAGCTCTCTCTGTGCTGTTTGAGACTAGCATCGAAGACAATGACAACTACATAGCCATTATCGATGGAATCAACAGTGTCAGTCGATTCGGTAAGAGTGGGAGGGTGGGTCCCTTCTCTCTCCGGGGCCTCCTGCCCAACTCCACAGAGAAGTACTTCATCTACAACGGCTCCCTCACCACCCCACCCTGCACTGAGACCGTGGAGTGGATCGTCttcaagaacactgtggccatcTCCGACACGCAGctggaaatgttCTGTGAGGTGATGACCATGCAGCAGGCGGGCTACGTGATGCTGATGGACTACCTGCAGAACAACTAcagggagcagcagcagcagttcaTGGGCCAGGCCTTCTCCTCCTACACCGGCACAGAGGAGGTCCTCACTCCCAtctgcaGTTCAGAGCCGGAGAACGTGCAGGCAGACCCCCATAACCTGACCAGCCTGCTGGTGATGTGGGAGCGGCCACGGGCGGTGTACGACGCCGGGATAGAGAAGTACTCAGTTACCTACAAGCTGGCCCAGGGAGAGGACCCTCCGGCCTTTGAGTACCTGACCGACGGAGACCAGGATGTGGGGGCCATATTGCAGGACCTGATGGCCAACACCAGCTACGTGGTTCAGGTCTTGGCGGTCTGCACCAACGGTCTGTACGGCCGCGTGAGCGAGCAGCTGACTGTCGACATGCCGATCGACGACCCTGAGGAGACCCCTGATCCAGATTCTACTGGATTTGCAGAGGAAGAGGACTATGGACCCCGGGTTGAACCGGGTGAAGACCAGGACAATGACATGGACTGGACCACCCCAAGCTCTACGACGACCAGGCCCAAAACAACCACTGGCCTACCAAGCCTCCCTTTGCCTGGTATCAGAACAACCACCCCTTCTGTCCAGAGGAGAACCACCACTCCAGTGTCTCCTTTCAAGACCACTCAGCCCAACCGATCCCATACGTCCACGGAGCCGAGTGTAAGGTACCGCACCACGACCAGAGCTCCAGCAGAGGGGGCCGTCTCACCAGGCAGCAGAGGGAGCGGGAGTACACAGAAGTATACCACAACAGCGACCATGCCACTGTCTCGCATTGATGACGTCACCACTTCCTCAACCAGAAAGGAGAAGGGCAGAGGGGTGGTGCACCCCGTGACCGTCCCAAGCGGCAAAGGCAGCGGTGTTCCCATGGCCATCCCTCTCCCGGAAAGCTGGACCGTGGCCACTTCTTCCCCCTCCCTTTTTCAGGGGGTACCACCACAGCCTACAAGTCCCAGCATGCCCTTGTTTTCGTCCACTGCCTCCTCCTTCGGCAGCGTTCTCTCGCAGACCACGCAGCCGGTGTTCAACGGTGagatcctcccctccacccttcctGTGTGTGACACGTCGACCCCTGGTTACCCCGGCTCCGCCACTAGCAATGCCCCCACCGCCTGCCTGCATGCCCCTCCTTCGTCTAGACCTGTGTCGTCTGTGACCCCTCCTGCTCGGGACTCCCCGCATGCTGCTACAgcactgttgtctagtggtgactCATTCCtcgctccctcctccctctcctcccccaccctgcctctcctccctcacccctcacACCCCCTGTCTGGTTGGGAGACCGTAGTTTCTCATGGTGTTGGCGATGAAGGCgatgatgatagtggtgatgGCGATGTGTTGTCTGGTTCTTCATCCATGGCCTCAGGTGACCCCGCACTATTTAGTGACACTCCCCCccttcaaactctccctgactCGCCCGTCGAGTGGGACCTGTCTGAGCTAGCCTCTAGACCGCTCCctgcagcctctctctccctgcagccttctcttctcctctctagtGACTTCTCTCTGTCCGGGGCCACCCCGGGAATCACTGACTATGTCTATGGCAGGCTGGGGGACTCTAGTTATGCTACGGGCGGTGTAATAGAGTCTTCTCTGTCGTGGGTTGTTGATGGTGGCGGAGGGTTCACGGTAGCTAGCAATGGTGTGGAGTCGTTGTGTAGCTGCTCTCTGGATGGCACCTCGTCCTCTTCCTGGTTGCAtgcctctcctcacctccccctgCCCACGTCTGACTGGGGGGCGGCTAGCCTAGCGCTCTACTCCTCCGGTAGCGACTTAGACCATCTCATCCATTCATCTCTGGCGGGCTCCACCAACCCGTCTGTAGGTcagcctctcttctcttcctcctcctctcctcctgttcctcatcctcctctctccggTTCCCATGGTGACCTGCACGTTTCTGTTACAGCCACGCCGCTCCACTCCAAGGACCGCTGGGTCTCGGCCCTCCGAACCTCCGcccccccctcttcttcctcccgcACGGCCTCCCCCGTCACCCCCACCCTCACCCCTGACCTGCAGACGGTAGACAGTAATGCGTCTGGCTCGACCCTGTCGGGAGAAGCTCAGGAGGAGCTAGATGAAGAGTGGGACAGGATTCAGAGTTCAGCCTCGGCCTCGGCCTCAGGGGAGGGAATGTTCCCTTACATCCCCACCGCCCCCCCCCCATTCACCTCTGAGGTTGCCGCCTCTCCCGATTCCGACAATGATGAACGCTCCTCTGCGTTTTACTTTGAGAGTGAGAGTGGCAGTGCTGTCGCCACGGAGACGGCGGGGAGCACAGCAACAGTATCTGCGATAACTGCGGCGGTGCCCTGGCCGCTAGGTGGGGAGGAGCAGAGTGGCTCGGGCCAGGGCGAGAGCCCTTACGACAACGAGATGTCCTCAGACTTCAGTATCCCTGAGCGCACAGAGAGagactctgaggaggaggagccaATCGCAGAGGCCAGTAACAGCAGCCATGAGTCCAGGGTGGGTCTGGCCAGGGATAAGGAGAGGAGGGCCGTGGTCCCTCTGGCGGTGGTCTCCACCCTCACCTTCGTGGGACTCATCATCCTGGTGGGCATCCTCATCTACTGGAGAAAGTGTTTCCAGACTGCCCATTTCTACATAGAGGACAACACATCGCCCAGAGTCATATCTGTTCCACCCACACCATTGCTTACAGCTACAGATGAACATGAAGCCGTTGCGGTGAAGCAGTTTGTCAAGCACGTGACAGAGCTCCACCACACCAACGCATTCTCCCGGGAGTTTGAGATATTGAAAGAGTGTTACGAGGAGGTGCAGGTGTGCACAGTGGACCTGGGTATCACCGCAGACGGCTCCAACCATCCAGACAACAAGAACAAGAACCGATACATCAATATCCTGGCCTATGACCACAGCCGAGTAAGACTCTCAACCCAGGCTGACAAAGACGGGAAGAGTGGAGATTACATTAACGCAAACTACGTTGACGGTTTCAACAAGTCCAGGGCCTACATCGCGGCCCAGGGCCCTCTCAAGTCCAGCACCGAGGACTTCTGGAGGATGGTGTGGGAGCAGAACGTGGGCGTCATTATCATGATTACCAATCTGGTGGAGAAGGGACGGAGGAAGTGTGACCAGTACTGGCCCCTGGAGAGCCAGGATGAGTACGGTGGTTTCCTGGTGACGGTGAAGAGCAGCAAGGTTCTGGCCCACTACACCGAGAGAACTTTCACCCTCAGGAACACCAAGGTCCAAAAGGGTTCACTGAAGGGGCGGATTAACGAGCGGACCGTGACACAGTACCACTACACCCAGTGGCCAGACATGGGCGTGCCTGAGTACACACTCCCCGTGCTCACCTTCGTCCAGAAGTCCTCCAAAGCCAGGACAGATGACATGGGGCCTGTCGTAGTGCACTGCAGTGCGGGCGTAGGCAGGACTGGCACCTACATAGTGTTGGATAGCATGCTGAAGCAGATCAAAGAAGAGGGCACGGTCAACATCATGGGTTTCCTCAAACACATCCGCACACAGAGGAACCACCTGGTACAGACAGAGGAGCAGTATGTGTTCATCCACGACGCCCTGGTGGAGGCCATCTTGGGCAAGGAGACGGAGGTTTCCTCCAGCCTCATCCACAGCTACGTCAATGACCTCCTGACCCCAGGGCCCTCCGGCAGGACGCAGCTGGAGAAACAGTTTAAGCTGGTATCCCAGTCCAATGCCAAACAGTGTGACTACTCGGCAGCCCTGAAAGAGTGCAACAGAGAGAAGAACAGAAACTCCTCTTTAATACCCGTTGAAAGGTCACGGGTGTGTCTGTCCACGGTGGTGGGAGAAACTACATCAGATTACATCAACGCCTCATACATTACGGGGTACCGGCAGAGCACTGAGTTCATCGTGACCCAGAACCCACTGGCCGGCACAGTGACAGACTTCTGGAGGATGATCTGGGATCACAACGCTCAGGTCATCATCACACTGCCGGGAACACCAGCAACACTGGGAACACCAAGCCTGGCAGAGGGGGAGGAGCCGTACGTGTACTGGCCCCGCAAGGAGCAGACAATCAGCTGTGAGGCGTTCACAGTGACCCTGCGGAGCGAGAACCATGTGTGTCTGGCCAACGAGGAGATGCTGGTGGTGCAGGACTATGTCCTGGAGGCTACACAGGATGACTATGTTCTGGAGGTGAGGCACTACCGGGCGCCTCGCTGGCCCAACCCAGACAGCCCCATCAGCAGCACCTTCGAGCTGCTCAGCCTGGTGAGGGAGGAGAGCTCCTCCAAGGAGGGCCCCATGGTTGTCCATGACGAGGTTGGCGGTGTGACTGCGGGAACCTTCTGTGCCCTGTCTACTCTGGTGTGCCAACTAGAGTTGGAGAGCTCTGTGGACGTGTACCAGGTGGCCAAGATGATCAACCTCATGAGGCCCGGGACCTTCACTGATGTTGAGCAGTACCAGTTCCTGTACAAAGCCATGCTGAGCCTGGTTGGCACACAGGAGGACGAGAGGACGCTCCAGTCCTCTGACAACAACGGAACGGTCCCAGGGGGCCCTGTCAGCACAGCCGAGAGCCTTGAGTCCCTGGTGTAACCATGGCAACGGGGCCCCTAACTTGCCAGTATGGACTCTTGCCTGTCTCACTGTGTTCCGTTTTTAAAGACAGCAGCTTTGCCTTTTTCCCCCCCTCcttttttcctcctcttctgttcTCCGTCATTGAATGGCAGTTTCCTGACCGCTGGACATGATACCGCACGACCCTGTAATGTGTGCCTTTGTACATTCATCTTGTACTTCTAACGGCGTTCATACAATTGTAGATTAACTTTATGATGTTTTGTCGATACCGTCATCTTGAGATGTTTGCTTAACTAACTGTTTTCCCTAAACTTTCGTATTTATTGGCAGTAAGCTATAAAAAAAGAAGGGAAAACGCAACTTTTACGTTAAACAACATTTTGTTAGCCTATTTTTTGTAGAGTCAATGCATTGAGCAACTCATTCTTCCGTCTAGACAATGTAAATACTATTTTGTTTGTAGCAACGGTGAGCTTTTGAAATCAAAAATGCACATTGGCATGAAATAATAAATCTAATATGTAAATAATATTATAGCAACCAAGACAATGGACCAAATTTCTATTTATACTTCTAGATTTTTATATTTtactacagtttttttttttgtcaattttcaATGTATGGCTGCAATTCTAATAACTTAGTCAAAGCATTTTTTTGTATGTTTTAATGTTATAGCTAATGTTCTGTATTTTGTAACGGACTAAATAGGAAGCTTTGGGGTACTGACACGTTTTAGCTGTACATGAAACTTTGCTGGATGATTAGACATAGGATTAAACAAGTGAAAGAAAACCAAGGAAGGAGCTTTTTCTTAAACTACTGTGAAGGTCAATCTAGACCTGTGGGTGCAAAGTACATTAAATATCAACTGTTCCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190007 lncRNA downstream 18034 60274737 ~ 60274978 (-) True G166752
TU190005 lncRNA downstream 19362 60273392 ~ 60273650 (-) True G166750
TU189951 lncRNA downstream 71136 60205896 ~ 60221876 (-) True G166712
TU189914 lncRNA downstream 111712 60159455 ~ 60181300 (-) True G166677
TU189906 lncRNA downstream 136044 60147541 ~ 60156968 (-) True G166669
TU190045 lncRNA upstream 9598 60382240 ~ 60382528 (-) True G166790
TU190056 lncRNA upstream 35271 60407913 ~ 60408242 (-) True G166798
TU190058 lncRNA upstream 36411 60409053 ~ 60409280 (-) True G166800
TU190063 lncRNA upstream 46489 60419131 ~ 60421096 (-) True LOC110492857
TU190086 lncRNA upstream 87847 60460489 ~ 60460705 (-) True G166828
XR_005037391.1 mRNA downstream 329863 59951992 ~ 59963149 (-) True LOC110492814
XR_005037390.1 mRNA downstream 329872 59951992 ~ 59963140 (-) False LOC110492814
XM_021567288.2 mRNA downstream 344419 59936921 ~ 59948593 (-) True LOC110492804
XM_021567276.2 mRNA downstream 407298 59872917 ~ 59885714 (-) True LOC110492793
XM_021567266.2 mRNA downstream 451398 59826624 ~ 59841614 (-) False LOC110492782
XM_021567334.2 mRNA upstream 47859 60420501 ~ 60437560 (-) False LOC110492857
XM_021567342.2 mRNA upstream 76236 60448878 ~ 60455286 (-) False ppp1r3ab
XM_021567347.2 mRNA upstream 76236 60448878 ~ 60455286 (-) False ppp1r3ab
XM_021567353.2 mRNA upstream 76236 60448878 ~ 60470558 (-) True ppp1r3ab
XM_021567361.2 mRNA upstream 164977 60537619 ~ 60559746 (-) False LOC110492890
TU189774 other downstream 372682 59919878 ~ 59920330 (-) True G166541
TU189225 other downstream 462997 59828076 ~ 59830015 (-) True LOC110492782
TU188911 other downstream 805172 59487461 ~ 59487840 (-) True G165746
TU188907 other downstream 810698 59481957 ~ 59482314 (-) True G165742
TU187215 other downstream 1929418 58362586 ~ 58363594 (-) True LOC110492691
TU190051 other upstream 29706 60402348 ~ 60406808 (-) True G166794
TU190135 other upstream 142584 60515226 ~ 60515522 (-) True G166877
TU190177 other upstream 167547 60540189 ~ 60549179 (-) True LOC110492890
TU191049 other upstream 306081 60678723 ~ 60679041 (-) True G167723
TU191030 other upstream 363329 60735971 ~ 60740351 (-) True G167706

Expression Profile