RNA id: XM_021567361.2


Basic Information

Item Value
RNA id XM_021567361.2
length 3988
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110492890
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60537619 ~ 60559746 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAAGGCGTCTCAACAGAGTTTTCAGTGATGAAGACTTCGAGATGGCAAAAGAAACCCATCCTGTATACCTATTTGAAGAGATGCCTACATGAAAATCCCTTTCAAGACTGCTGCTTTCTCTCGGACCTGCCGTGATTGAACTTCATCTTCTTCTATtaggagaaagggagagtggaTCTTTTTAGGTGCAAGAGCGGCTGTCTGCAGAAATGCCAGCCAACCTCACCGTCTCAAACAACACCGTGCTAGTTCTGGGTGCCGAAATTAACACCGCACAAACCCAGGACACCGACTATAACTTCCCTGCTCTGATATTCGGAATATTGCTAATTGTGGTCATCATTTGTGGAAATTTGCTTGTGTGCCTTAGCGTGTACAGGGAAAAAGCTTTGAAAACTACAACCAACTACTTCATAGTCAGTCTGGCTGTGGCTGATTTGATGTTGGCAGTTTTGGTTTTGCCACTGTTTATATATGTTGAGTTCCAGGGTGGTCTGTGGTCACTGAACATGCATGTCTGCGACGGCCTGATGACAATGGACGTGATGCTGTGTACGGCCTCCATATTCAACCTCTGCGCCATCAGCATCGACAGGTTCATCGCTGTCTCCATTCCACTCAACTACAACCTTAAGCATGTTGATCAGAGACAGATCTTCCTGCTCTCCGCCACGTGGATCCTGGCCTTGGCAGTGGCCTCACCCGTCATGTTTGGCATCCAAAACGTCCCGCAGCGGGACTCTACAGAGTGTAAACTGGAGGACGACAACTTTGTGGTCTACTCCTCTGTCTGCTCTTTCTTCATTCCCTGTCCCATCATGCTCCTCCTCTACTGCGGCATGTTCCGGGGattgaggaggtgggaggaggcaCGCAAGGCCAAGCTGAGGAGCAGCATCCTGGTCTGTAGGAAGTTCCAGGACGCAACTGCCTCACTGCCCCCGCTGGactccctgcctcctcctctacccccaatTATCAAGAGGAAGGAGCTCACAGACATGAAGCCAGAGCTAAAGGATATTAATCTGGAAGAGCTGGACCCTTACCCCCTAGATTCTCCAGACGGCCCCTATAATAACTCCTCACCAGACACACCAGACCGCCCCTATAACAACTCGTTAACAACTACAGAGTACAAGGACGGCCCTGTGCCCACCGTGGTGGCCTACTCTAACATTGGGTACAACCTCCACCCCCAAACCGACCCTCACCAGAAGAAGAGGGCCAAGATTAATTGCCGAGAGAGGAAGGCCATGAAGGTGCTTCCTGTCGTTGTGGGTGCCTTCCTGTTCTGCTGGACCCCGTTCTTCGTGGTCCACACCATGCGGGCCCTGTGTGCCACCTGTTACATCCCCCCATGGCTGATGAGCATCGTCACCTGGCTGGGCTACGTCAACAGCGCCCTCAACCCCATCATCTACACAGTTTTCAACACAGAGTTCAGGAACTACTTCAATAAATTCCTCCACAGCTGCTGTATATACCGATAGACAAGATGAGCacaactagcctggtcccagatttgtcATCATGACAAggaactcctatggtcattgtcatttCTATTGTCGTTGTAACTCATATGGTCATTGACAACACAgcaaaaacagatctgggaccaggctgagGCACCACCGCTGATGAATGGACAAAAAAAGCACAATGAACAATACCATTGTAAGATGTTACGATATCAAATGTGTGCTTTGCTGTACAGAAAATCTTGCGATTGCATATTTTTCTCCCACttgggattttatttttttctgttgATAAATGCTTGTGATTTATCCTATTGTGACAGCAATGTTGTTTGTCAGCTTACCATATGTTGTTTCCATGTTTTATGTGGAAAGCTTTGTGGTAAGGAATTGCATTGAATCCCTCCAACTAAAAAAGGTGCTAAGAAATACCAGCAAGGCATCAATTTCTTAGATTATTAGTGGTAATTAAATTGTATCTTTAAGATTACTTATTTTTCTCACTTAAATTAGGACTTCTGTCCCTAAACTGTGTGGACATTAAGGACCGGGGTTAGAACACTGCGTCAttgacaaaaataaaaataaaacacttcTCCACACAACCATGATTATACTGCAAATCCTAATCCAACTCCTGACTGAGTCTGACAAAGATCCCCACAACAAAATTAAACCTCATCCAAAAATATCCCTCTCGCCCATACGGAAATTGAGGCTTTTGACAAACGGACAAAGTGATTAAAAAAAAGGGCTAAATAACAAATACAGTTTCCACTCTGTTGCCTAGCAGCACAAATCATGTATCCAAtacaagaaaaaaaaacaacaacaagagtTTCATGGTTCAAATCCAAGGAGAAAGCTTTAAGAGGGAGGATGAAATATGATGGAGCAATTTCAGACACCATCTGCTTGCAATGTGACAAGTATTGACAGAGTAATTTACATTCGCAAACTTCTCCCCCAGGATGATTGGTCCATCAGCCACATGTGGGGGACAGAGGTTAGCCTAGCAACAACAACAGGTGGAGAAAGAATTAAAAACATTAGACCTATTTCAAATCAGGGCAGTGAAAACTAGCTCTGCAGCATTTATGAGCTAACATAAATGTCAAATGCAATTCAGGGCATTTAGAGGAGTGACTGGAAATGGTAATCACCCTGTGTATCTATGACTCAGATTACATCATGGGTGTGTGAGTTGGAAGATTTAATGTCAGTCCTTCCATAAACGTTGTTTTTCCACAAACCCCCTTATGACAAGTCTCCCTTACACTATGACCCAAATGAGTTAAGAtattctccttcagtctcctcCAAGACATCAGACGCAAATTATATTCAAAGATATTCAAGTCTATCTCAACTAGGAGAATGGAGATGGCCGTTCTAGAGTTGTTtcaaggacaggagagacagcCGAGTGGAAACGTACTTTGGGTCCACTTTGGATAGGACTGCTGTAAAATGTGATTATGGAGGTGAAATTGTGAAGGTGGATGGACAGACAAGAAAGAGGGATGCATGTCTCTCCCAAGCCAATGCCTTTATGTAGATCTGAGAGTGTCATCTCTCATTACAGTCAGAAACCCACAAAGTATTGGACTGTCTGTCAATAGATGGCCCTTGACAACTCCTCTAACTCCCTCCCCGTGATCCAAAGTAACTACTGGAGTGGGGGTGATTGTTTATGTCAGCAATGTAGAGGGAAGCTTCTCTCAAAataaacaaggcaacagtaaacatgtagtCCCCCATGAATGATGCAGCGCAAGGGCTTGACATTAAGGTAAATTTGCCAGTGGCACACTTCGCCAGTAACAAGTGAAAATGACTGGCCCGAATGAGACATTTCTGTCCCAGGCCAAGATCACAGGAAAGCAAGTTAAGCTAGCAGAGTTTCAATTGTAGGTGATTTCATGTTTCATTTGCAGTCTGGGCAAGTACCTTATAGCCAACCATAAAATCTGATATTTACACTGATTGTTTGGAAAACAAATATAAAACCATCCCCCTTTCAATGATGACATATAGCCTATATTAAATCTTTAAAATGAAATATTCCCCTTCAGAAATTTGTCCAATAACATATTGATGAAAAGCAATATTATCAGACAAGTGTGTTATTTTAGCAAAAAGCATTATCACCCTTCTGATGCAGCATCGTGACTACATggctgaagcatggggttgcTTCTCTGTATTGTCTACCACAATGGGTTAATCATTAGCTAGATCACAGACTCTAAATATGATCTTGTCGCTTGTTAAATGTCCTAAAAAAAGAACTTGCGCAGGCACTAATAAAATCACGTGATTTTTACAGTGTTTATAACTACAGTGTAATTGTGTGAATTTTACAGTGAATATAGGCCTACCGTTTATGCATTCAAATGACTGGTGCGCTTCCCGCCGCTACTTTTATGTTGTCATGCCAGACAATCAAGATTGTAAAACGCTGCCAATTGCTCAAAAAATgtaagttgagaaataaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190147 lncRNA downstream 13705 60523708 ~ 60523914 (-) True G166889
TU190140 lncRNA downstream 19881 60517538 ~ 60517738 (-) True G166882
TU190118 lncRNA downstream 37419 60499988 ~ 60500200 (-) True G166860
TU190113 lncRNA downstream 45173 60492198 ~ 60492446 (-) True G166855
TU190112 lncRNA downstream 47408 60489887 ~ 60490211 (-) True G166854
TU190203 lncRNA upstream 6364 60566110 ~ 60566410 (-) True G166944
TU190205 lncRNA upstream 7098 60566844 ~ 60567189 (-) True G166946
TU190211 lncRNA upstream 9236 60568982 ~ 60569187 (-) True G166952
TU190239 lncRNA upstream 28077 60587823 ~ 60588047 (-) True G166980
TU190266 lncRNA upstream 46525 60606271 ~ 60606672 (-) True G167006
XM_021567353.2 mRNA downstream 67061 60448878 ~ 60470558 (-) True ppp1r3ab
XM_021567342.2 mRNA downstream 82333 60448878 ~ 60455286 (-) False ppp1r3ab
XM_021567347.2 mRNA downstream 82333 60448878 ~ 60455286 (-) False ppp1r3ab
XM_021567334.2 mRNA downstream 100059 60420501 ~ 60437560 (-) False LOC110492857
XM_036952084.1 mRNA downstream 164977 60293012 ~ 60372642 (-) False ptprz1a
XM_021567373.2 mRNA upstream 65396 60625142 ~ 60627473 (-) True LOC110492911
XM_021567382.2 mRNA upstream 275411 60835157 ~ 60850501 (-) False LOC110493006
XM_021567381.2 mRNA upstream 275411 60835157 ~ 60850563 (-) True LOC110493006
XM_021567392.2 mRNA upstream 321650 60881396 ~ 60883242 (-) True LOC110493125
XM_021567393.2 mRNA upstream 329047 60888793 ~ 60899520 (-) True zgc:172145
TU190135 other downstream 22097 60515226 ~ 60515522 (-) True G166877
TU190051 other downstream 130811 60402348 ~ 60406808 (-) True G166794
TU189774 other downstream 617289 59919878 ~ 59920330 (-) True G166541
TU189225 other downstream 707604 59828076 ~ 59830015 (-) True LOC110492782
TU188911 other downstream 1049779 59487461 ~ 59487840 (-) True G165746
TU191049 other upstream 118977 60678723 ~ 60679041 (-) True G167723
TU191030 other upstream 176225 60735971 ~ 60740351 (-) True G167706
TU191197 other upstream 415016 60974762 ~ 60975021 (-) True G167866
TU191365 other upstream 694766 61254512 ~ 61256015 (-) True G168021
TU191382 other upstream 731393 61291139 ~ 61300092 (-) True LOC110493186

Expression Profile