RNA id: XM_021567380.2


Basic Information

Item Value
RNA id XM_021567380.2
length 952
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110492990
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60735125 ~ 60740362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCAGGAGCTCGATGTTCCATTGGTCTGACACGGAAACCACTTCCATAAAGAGGACCCAGTGCTTCTGCTGATGTATCATCCGACACCATAAATACCGTGTTTCATGTTTCACTGCCTGTTGCTTGCCACTGTGCTAGTCTTCCCTTCTTCCTCCAGGTGTGTCctgccctcttcctcttcctttcaTAGGGTGTGAAGCACAACAACAGCCAAGATGTCAGAAAAAAAGATGACGTCGAGTCGCAGGCATCATCTGAAGAGCTTGGTGCTCCAGATAGCATTTGAGCTGATTGAAGTCGAGAAAAAGGAGGCTGAGCAGGTGAAAAAAAATTTCATGGCTGAGATCCCTGGCCTGGATTTGTCTGGAGATCAAGCGACGCTGATGGAAATGCTCAAAAAGATGGCCCATACCATTGACAAGATTGATGAGGACAGATATGATGCAGAAGCAAAAGTGTTGAAGGCTGACAAAGAGATTGAGGACTTGAAGATGAAAGTGATTGAGATCCAGGGCATGAAGAAGCCAGCCCTGAAGAAAGTGCGTATGTCTGCTGATGCTATGCTCCAGGCTCTGCTGGGCACCAAGCACAAGGCTTCCATGGATTTCAGAGCCAACTTGAAAGAAGTGAAGAAGGAGGTCAAAGAGGAGGCAGCGGATGCAGTTGGTGACTGGCGCAAGAACGTTGATGAACAGGCTGGCATGGACGGCAGGATGAAGAAGTTTCAGGGTTAAACACAGCTGTCTTTTGTCGTATTGTGGTACAGAGATGGATTTATATGACCTTGTTGTTAGGAATCCCTGCAGGAAGAGGATCTTTGATCCGAAATgctgttattttttttatactgtagctgttcaaCTATTCGACACTATGGTTttggatctctttctctctctgtctcgctctctccgccaaataaaacaataaaaaaaaaaattaaaagcttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190323 lncRNA upstream 65412 60669512 ~ 60669713 (+) True G167059
TU190285 lncRNA upstream 117073 60617769 ~ 60618052 (+) True G167025
TU190250 lncRNA upstream 129263 60605591 ~ 60605862 (+) True G166991
TU190166 lncRNA upstream 185568 60549349 ~ 60549557 (+) True G166907
TU190159 lncRNA upstream 196647 60537821 ~ 60538478 (+) True G166900
TU190416 lncRNA downstream 60085 60800447 ~ 60829029 (+) True G167137
TU190434 lncRNA downstream 101299 60841661 ~ 60891125 (+) True G167154
TU190444 lncRNA downstream 116230 60856592 ~ 60907513 (+) True G167164
TU190479 lncRNA downstream 180754 60921116 ~ 60921322 (+) True G167198
TU190485 lncRNA downstream 195891 60936253 ~ 60936489 (+) True G167204
XM_021617522.2 mRNA upstream 1094 60725590 ~ 60734031 (+) False LOC100170211
NM_001129990.1 mRNA upstream 1259 60725618 ~ 60733866 (+) True LOC100170211
XR_005037406.1 mRNA upstream 15167 60714653 ~ 60719958 (+) True LOC118941118
XM_021567378.2 mRNA upstream 22927 60697379 ~ 60712198 (+) True LOC110492964
XM_021567375.2 mRNA upstream 39239 60682980 ~ 60695886 (+) False LOC110492922
XM_036952224.1 mRNA downstream 41353 60781715 ~ 60846975 (+) False LOC110493043
XM_036952234.1 mRNA downstream 41353 60781715 ~ 60846975 (+) False LOC110493043
XM_036952240.1 mRNA downstream 41353 60781715 ~ 60846975 (+) False LOC110493043
XM_036952229.1 mRNA downstream 41354 60781716 ~ 60846975 (+) False LOC110493043
XM_036952235.1 mRNA downstream 41356 60781718 ~ 60846975 (+) False LOC110493043
TU190136 other upstream 219245 60515632 ~ 60515880 (+) True G166878
TU189317 other upstream 781960 59945708 ~ 59953165 (+) True G166131
TU186698 other upstream 2518742 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 2803134 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 3681483 57048314 ~ 57053642 (+) True G162130
TU190389 other downstream 111070 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 111070 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 322231 61062593 ~ 61074591 (+) True G167288
TU190618 other downstream 491834 61232196 ~ 61232545 (+) True G167325
TU190863 other downstream 791227 61531589 ~ 61532327 (+) True LOC110510683

Expression Profile