RNA id: XM_036952235.1


Basic Information

Item Value
RNA id XM_036952235.1
length 3337
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110493043
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60781715 ~ 60846975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTctgtgagaggaaagagagtgctGCTCTGAACGCTCCTCACATTTTCAACAGGCTGCGCAGGGGACAGGATCTAAGAGAACAggaatccctgtgtgtgtgtttctgtgtctgtgtgtgtgtgtgtgtccgagagTGAATGAGTGGAAAAGGAGTACATAAATCTGTCTTATAGAAACATCCACGCTGGCCATTGGGCTCAGGACTGGAAGATACAGAGAGGTTAttctgaggaagaagaggagctaCACTGTCACATATTTTATCTGATTAaaaggggaagaagaggagaaaggagacatGTCACGTGCAATCCCGAGAAGAAACACCAGCAAGCAAGGTTTGCAGAACCTCTTGAAAATCACCACCCAAAGGAGCGTTGAGGATGCAGAGGAGGTGGAGCGAGAGCGTCGGCGGAGGGCCCGGGAGTCCTTCCGCAGTATGGGCAGCAGCAGCACCTCGGACCCTGGAGGACTTTCACTAGACAATGTGGTCCTGGCTGAGGACGGCCTGTATGAGAGTGATCTGAAGCCTAGCAGCAGCTCTCCTTCTATGGAGGAGGACGAGGGCTTCAGTGACTGGACCCAGCGGTTGGAGAGACGCCGGCAGCAGGCCCAGCGCATGGAGGAGCTCAGTCAGGCCCCAGAGGAGCAGGACCAGAGGCCCCTGAACGGTGCCGCAAAGGCCCCCACACCACATACCCTCTCTGCCTCAGCCACTCCCACCACATCCACCTCTCGTCTGCAGAGACAACACAAGGCAGAAgcggaggatgaggaagagaagaAGTTGGTAAGAAAGGAAAGTGAGAGGAaaaggagggagcgagaggaggtggtgagagaagagagggtgcaaaaggagagggagagagaagaggagggagcgaAACAGAGGCAGGAGAAGATGAGGGTGCtcaagaagagagaggaggaccaaagacCAGATGCTAAGGAGATGTTCCAGTTGAAGGAGAAGAGAAAAGATGTGAAGGTCTCCTACACATCCCAAGTCGTCCTGCAGACGGAGGCAAAGCATGCTAACACCAACGGAGACACCGTTGGGGAGGAAATGACTTCATATATGGCCAAAACCAAATTAAGAGCTCCCAGggCTGTGGTACAAGTGGCAGGGGTCGAGGCTGAGGAGGAGGCGGAGGCCATCTTAGAGGCCAAGCTGGTGAAGATCCGGCGTAGCCAAGCAGAGAAGGAGAACCAGGAGCTTGAGCAGCTCAGACACAAGCAGGCTGAGGCCGAGCAGGATCTGGAGgagctgaagaggaggagggaggagagacgccaggtcagggagggggaggagcgcaggagcagggaggaggagcagcagcgccTGGCCAAGGAGGAGGAAgaaaagaggaggatgaaggaggacatagagaggaggaggatggaggcagCAGAGAGGATGAAGAGCCTCAGTACCTCCAGTGTGGACGGAGATGAGTTGTTTAGCCCGCTCAATCCTAAAGGCTCCATCTACAAGATCACAGAAAGAACAGAATCCTTGAACCGGTCCCTAAAGAAAAGCAACAGCTTCAAGAAGACACAGCCCCCTGTTCTCCTCGCCAAGATCGATGACAGGCTGGAGCAGTACACCCACGCCATTGAGaaTGCTGAGGGTCTGAAGGTGGGTGTGGCAGACCTGATCACCCAGTGGGTGAAGGGGAACCCAGATGGCACAAGCAGGAACTCGCCCCCGAGACCAGCTGATGTAAAAGCTGGTGACGTGATGCAGAAAAAGAACATGTGGGAGATCATTGGAGAAACATCCCCTGGGAGATTAGGGGCAAAGGGCAATCCATCTGGTAAAAGGTACAAATTTGTGATGACTGCTCATGGCAAGTATGCGAAGATTCctgttgatgatgatgaatatatgGATGAATACACCAATGGAAAAGCAGACCTACCCCATGGTGAATATTGAAAAACATGTGTTGGTGGCAAAGACTTTCTTCTCAAGACGGTATGAACTTCAACAACACCGTTTGCTTGTCAGCCAACCCTGTGATGATATCCTGAAGTAGCATACCTTTATACCTTTCCTACCACCTTAAGTAGGTAACTttagaaatgttttaaaaatggttAGCCGTtgctttgttttgtgtgtctgtatatTCAGTTTGTACAAAGCAATGAGAACTCCCCAATTCCATTTCATCTCCAGACATGTACAGAACATCTGCTGtttccgtgacatagactgaccagatgaatccaggtgaaagctatgaccccttattgatgtcacttgtttaaGCCACTTCCATGGgtgtagattaaggggaggagacacattaaagaaggatttttaagccttaagacaatttagacatgtattgtgtgtgtgccattcacgCACCggtgagtgtcaagaactgcaacgttcctgtgtttttcacgctcaacagtttctggtgtgtatcaagaatggtccaccacccaaaggacatccagccaacttgacacaactgtgggcagcattggagtcaacatgggccagcatccctgtggaacgcttttgacaccttatagagtccatgccctgacaaattgagaaagttctgagggcaaaagtgtgtgtgtggagagggattaatattaggaaggtgtccttaatgttttgtacactcggtctATATTTGGTTTCTTGTCAAAAGTATATGCCACATATgtttatgtatatacagtatgaatgtttgttttttactcAATGGTTGTTTCTCTTCTTTGTTTATGCCATTGAAAAGTATTAGGTGAATGCATTTACATGTATGTTGGAAATTATGCAGAAAGGAACATAAAACCCAAGCTTAGAATATTAAATGGTAACTCTTTGTCATATTTCCAGGTTTGGGAAGTTTAGTCACTGAGCCCGTTATTTGTAAtatcatgttttaaaaaatgtgtttttcttctgGCATTTATTTGAGCACAGAGATTATCCAGACATCAGCCTGAATAAGGTGTTAAACACTAGGCTACACTGGCTTTTAAGCGAttcatctctttttttttttcatgcatAAAATTCTGCATTGAAATGCCAAATAGTTTTGAGGTAACTGGATAACCTGGTAAGAGAACATTGCTTGTCTGTCGTATTATTTCCACTTTAtttcacacacactaacatttCATCCTGCCATTTAACCATGATTCTGTTTCCAGTGATGCACACTGGGGTTTTTCACATCCTTACTTATGCTACTAATGTGACAATATTGTGATTACTGCTTTTTTTGTGTTACAACTTTCTTTACCTTAAACCTATTTGTTTCTGACATGAAATAAAGCATTTTATACGATGATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190323 lncRNA upstream 112005 60669512 ~ 60669713 (+) True G167059
TU190285 lncRNA upstream 163666 60617769 ~ 60618052 (+) True G167025
TU190250 lncRNA upstream 175856 60605591 ~ 60605862 (+) True G166991
TU190166 lncRNA upstream 232161 60549349 ~ 60549557 (+) True G166907
TU190159 lncRNA upstream 243240 60537821 ~ 60538478 (+) True G166900
TU190444 lncRNA downstream 9617 60856592 ~ 60907513 (+) True G167164
TU190479 lncRNA downstream 74141 60921116 ~ 60921322 (+) True G167198
TU190485 lncRNA downstream 89278 60936253 ~ 60936489 (+) True G167204
TU190486 lncRNA downstream 89793 60936768 ~ 60936995 (+) True G167205
TU190500 lncRNA downstream 114122 60961097 ~ 60961377 (+) True G167219
XM_021567380.2 mRNA upstream 41356 60735125 ~ 60740362 (+) True LOC110492990
XM_021617522.2 mRNA upstream 47687 60725590 ~ 60734031 (+) False LOC100170211
NM_001129990.1 mRNA upstream 47852 60725618 ~ 60733866 (+) True LOC100170211
XR_005037406.1 mRNA upstream 61760 60714653 ~ 60719958 (+) True LOC118941118
XM_021567378.2 mRNA upstream 69520 60697379 ~ 60712198 (+) True LOC110492964
XM_021567391.2 mRNA downstream 4442 60851417 ~ 60866445 (+) False LOC110493059
XM_021567387.2 mRNA downstream 4443 60851418 ~ 60866445 (+) False LOC110493059
XM_021567389.2 mRNA downstream 4443 60851418 ~ 60866445 (+) False LOC110493059
XM_021567386.2 mRNA downstream 4462 60851437 ~ 60866445 (+) False LOC110493059
XM_021567388.2 mRNA downstream 4462 60851437 ~ 60866445 (+) False LOC110493059
TU190136 other upstream 265838 60515632 ~ 60515880 (+) True G166878
TU189317 other upstream 828553 59945708 ~ 59953165 (+) True G166131
TU186698 other upstream 2565335 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 2849727 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 3728076 57048314 ~ 57053642 (+) True G162130
TU190389 other downstream 4457 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other downstream 4457 60851432 ~ 60866455 (+) True LOC110493059
TU190578 other downstream 215618 61062593 ~ 61074591 (+) True G167288
TU190618 other downstream 385221 61232196 ~ 61232545 (+) True G167325
TU190863 other downstream 684614 61531589 ~ 61532327 (+) True LOC110510683

Expression Profile