RNA id: TU190389


Basic Information

Item Value
RNA id TU190389
length 2723
RNA type TUCP
GC content 0.44
exon number 12
gene id LOC110493059
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60851417 ~ 60866455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATCCCCATTGGGGCCTCGCCTCCGACGCTTCCTTGTCCAATAGGGACCTTCCTTGGATCAAGTGTCACTATAACAGAAGGACATAATCAGGGTTGTAATTCTGCAGAACCTTACAGCCAGTCTCGGCCACCAGGGAGCTCACTTCTTCTTTCCGCTATTCTGAgGTGCAAAGTCCACTGTCACCATGTCTGACACAGAGGAAGTCGAGGGTAAGTTACATTATTACTATGTTATTGCCCTGTATCATTATTGTATCTTTCCATGATCATCGTCATTTTAAATGGGTAATTGTTCAATCGTATGCTGAaacattctgtatgttttgttaACCAATGCCTAACTGATTTCAATCCTCAATGTAGAATAGTTAAACACAATGGAGAAACCTGGCTGGACTCCTTAGGTTTCAAGTTGTGTTCAAAACTGCCCTCTGTAGCACAACATGTAGAGAAAGCCATGACTTAGTCATGACTTATTGATGAATGGTTTCAGGGGCCAATGTTGATAACAGGCCATTGACTAAATTGAGCATGATGCATTTAAATGAATTAACGCATTCCTTTAAATTATTTTCTAAATGTCAGAGCACATCCATCCACTCGTCTGTTAGCAACAGGTCCCTGCAACTCTCTAGACCTTTTACAGTTATACTGTCCTCCTAGTTTGTACACATTCTGTCTGAGTAAAAATGCATATCTCCTCTTTATGGAGGGCTATAAATCAATCCTATTAAACTATCAGGCCTTGAAATCTTTTGTCTGCTCAAAAGTCTTCCCGAGAGACCTGATTTAACAGCACTTTGTGAACTGCCAATTGATCAGCTATGGAGGACTGTATTGTGTATGCATACAACTGATCCCTACTGTACCCATATTTACagtgtataatatatatagtaaatattatattatatactgaTATATTGGATGCAGACGGATTCTTTTGGTAACACTATTGTTTTACTCCTTTCTTTCTCCGAAATTAATGTTTATATCCGTGGAGGCGAGGGAGAAGGTAAAAAACAATGACGCGCAGACAATGAAAATGTTCATGTCATCTATACTAATTTGTCAGCTGTGTCGCTCTTGATCCTCAGTGTGCTTGAGGATGTGTGTTCAACTCATTCGATCTTCATGTAGCTCATAGCATGTTGGATACTGCTAATGCTTCCACTTCACCTCACTTCATCAGACTTTAACTTGAACATACAATATGGTCATTGCGGAAAATATTTATCTACAGAGTAAGAAACTACAGGCTCATGTCAGACTAGATATACCAAATTAGAAGATACCTCGTCGGCAAACAAACCTTCGTAATTGGCAGAAGTGTTTGTATAGTAGAAAAGTAGCAAGGTCAATTTCAGGTCCCTGTATGTAGGAAACATCAACACATTGTCCAATATTGCCTCTATAGATCTATTCATTGAACCCTGAACTCTTTCTCCTGCTTGCTATTTTCTCTGCCTCATATAGCGCCACCCGGTGGTTACGCCCATGGACTCATCTCCTCTTTTAacctccatatctctcttctgTTCTAAATAACTCACCATCTTTCTCATGCTTCCATTCATTAACCTCTCCATTCACCTTCCTCTCCCTGGTTACTCACTGCATGTTGTGTAGCCATAGCAGAAGAAGtagttgaagaggtagttgaagaggtagtagaagaagaagtggtagaggaagaggtagaagtGGCCCCAGAGGCAGCCCCAGAACCAGAGGCAGAGCCTGAGCCAGAGCCCGAGCCAGAGGCAGAGCCTGAGCCAGAACCAGAGGCGGAAGCCCAAAAGCCACAGTTCAAGGTACCAAAGATACCTGATGGCGATAAAGTGGACTTTGACGACATTCAGAAAAAGCGTCAGAACAAGGATCTTGTTGAGCTGCAGGCCCTGATAGATGCTCACTTTGAGCACAgaaagaaggaggaggaagagctcATCGCCCTCAAAGAAAGAATTGAGAAGCGTAGGGCTGAGAGGGCCGAGCAGAACAGGATCCGTAGCGAGAAGGAGAAGGAGCGCGCGGCGAGGCGTGAGGAGGAGAGGCTGAAGAGGGAGGAGGCAGATGCCAAGAAGAAGGCTGATGAGGACGCAAAGAAGAAGTCTGCCCTGTCCAGCATGGGCTCCAACTACAGCAGCCATCTGCAGAAGGCTGACTCAAAGAGAGGTGGGAAGAAggaaactgagagagagaagaagaagaagatcctGGCAGGCAGACGCAAGGCCCTGAACATCGACCATCTGAATGAAGAGAAACTGAAGGAGAAGGCAAAGGAGCTGCATGAATGGATGCAGACACTGGAGTCTGAGAAGTTTGACCACATCGAGAGGCTGAAGAGGCAGAAGTATGAGGTCACAACCCTGCGTAAGAGAGTGGAGGAGCTGAGTAAATTCTCCAAGAAGGGTAAAACGGTCCGCAGAAAGTAAACGGTACCGTTCTGCTGCTTGGAGCCCAGACTGCCACCGTACTACCGGACACGAGCATAatgcagcaacaacaacacacacttaCGCTAAGATCATGGCTCGGACATGACTAACACTATGTCTTAATGTTTGCATATTCACAAAAGATGTGCTACGGTCTACAGACGTAGAACGGAGCCATTAGCTGCTGTTGTAGGAATTATCCCTCACGCTATCTCTCCCTGGACTGTTTGGTTCtcagtatttttgtaaataaagtGTGACTCTTCAACCTTGTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190416 lncRNA upstream 22403 60800447 ~ 60829029 (+) True G167137
TU190323 lncRNA upstream 181719 60669512 ~ 60669713 (+) True G167059
TU190285 lncRNA upstream 233380 60617769 ~ 60618052 (+) True G167025
TU190250 lncRNA upstream 245570 60605591 ~ 60605862 (+) True G166991
TU190166 lncRNA upstream 301875 60549349 ~ 60549557 (+) True G166907
TU190479 lncRNA downstream 54661 60921116 ~ 60921322 (+) True G167198
TU190485 lncRNA downstream 69798 60936253 ~ 60936489 (+) True G167204
TU190486 lncRNA downstream 70313 60936768 ~ 60936995 (+) True G167205
TU190500 lncRNA downstream 94642 60961097 ~ 60961377 (+) True G167219
TU190508 lncRNA downstream 108536 60974991 ~ 60975297 (+) True G167227
XM_036952224.1 mRNA upstream 4457 60781715 ~ 60846975 (+) False LOC110493043
XM_036952234.1 mRNA upstream 4457 60781715 ~ 60846975 (+) False LOC110493043
XM_036952240.1 mRNA upstream 4457 60781715 ~ 60846975 (+) False LOC110493043
XM_036952229.1 mRNA upstream 4457 60781716 ~ 60846975 (+) False LOC110493043
XM_036952235.1 mRNA upstream 4457 60781718 ~ 60846975 (+) False LOC110493043
XR_005034528.1 mRNA downstream 6770 60873225 ~ 60875437 (+) True LOC118937285
XM_021567396.2 mRNA downstream 133122 60999577 ~ 61091420 (+) False LOC110493150
XM_036952286.1 mRNA downstream 133124 60999579 ~ 61091420 (+) True LOC110493150
XM_021567465.2 mRNA downstream 317388 61183843 ~ 61191849 (+) False LOC110493175
XR_005037411.1 mRNA downstream 391261 61257716 ~ 61259025 (+) False LOC118941124
TU190136 other upstream 335552 60515632 ~ 60515880 (+) True G166878
TU189317 other upstream 898267 59945708 ~ 59953165 (+) True G166131
TU186698 other upstream 2635049 58215677 ~ 58216383 (+) True G163660
TU186506 other upstream 2919441 57928150 ~ 57931991 (+) True G163513
TU184934 other upstream 3797790 57048314 ~ 57053642 (+) True G162130
TU190578 other downstream 196138 61062593 ~ 61074591 (+) True G167288
TU190618 other downstream 365741 61232196 ~ 61232545 (+) True G167325
TU190863 other downstream 665134 61531589 ~ 61532327 (+) True LOC110510683
TU190931 other downstream 860504 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 1013315 61879770 ~ 61880424 (+) True LOC118936783

Expression Profile