RNA id: XR_005034528.1


Basic Information

Item Value
RNA id XR_005034528.1
length 2029
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC118937285
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60873225 ~ 60875437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTTACTGTTTGTCTTCTGTGTGACAGCACTCTATGATGGTGTAAAGAAGCAGGTGGGCCGCATGATTGCTGTCTGTCTAGTACATGGGGTTGTAGAGACACATTTTTTCAGAGGCTATACAGGCAAGTGTGTGGCCTACAATCTCCTGTGCCAGAACTGAAAGAAATTGCGGAATATGACTTCAGAGAGAAGTTGGAGAAGTACAATAAACATTCTAAGATCCAGTTAGCACAAACTGTTGACGAGGCACAGGAAGCGGTCATGTTGGGTCCAGTGCGATACATTCGTACATTGGAGAGGGATGCCCTGGTGGAGTCAGCCACAAAGTTCTACTTAGAAAGCAGGATACGGGATGCTCTTGAGCAGTGAGTTTCCATATATCTAAGGTATCTCAAGTTTAGTTAAATTCTTCAGGGAAAATAAATTTACATTTTTGACTTTATAAATTCAAAGAGGGTCTGGAGTGTCTAGGTCTCCTGCCTTCCATGAATAGACACTCAAGCCTCTTCAGAGAGGTTTCCATCTATGCTGAGAAAACTATTTTTGCCACAGACATAGCTTCTCTCTTCAAAGCAGAGTGCTCCCCACCTGGTACCAGTCAAAGAGCAATGAGAGAAGAGTCATGTTTCTGGAGGGACTGGCATCTGGAGGTGGAAGGTTAGATGCAAAACCATGATCATTGAAGTAATACAGCCCACATCAGTAAAATATCACTTATTCACTCTCACAACTGTGGGACAGCAGTTTATAGCCTTATTCTTCCATAGGCCCCCTAAGAATGTAATAGATCAATTAAATCCCAAACTACTTTCACTTAGAGTATTGTGTTCTCCAATAAGCATTACTTATGGACTTTAATGTCACCCCCTTCAATTTTTTCAGGGGAGAACACACCCTTTAACCATGGAGAAGGTATTAATTTTCACTTTGGGGGCTTCAACATTCCTAGGCTGGGATTGCCAGTGGAGCCACAGCTACAGGCTACAGTTCTATCTGCTAccacgccaagtctaggtccaagaggcttctaaacagattctacccccaagccataagactcctgaacatctaatcaaatgcctacccagactatttgctgctactctatctatgcatagtcacgttaGTATCTCTACCTACATGTTTATATTaactattttctttctttctttgtcgtttaaaaaaaactgcattgttggttaagggcttgtaagtaagaatttcactgtaaggtctacctacacctgttgtatttggcgcatgtgacaaatacaatttgatttaaagaTAATTAATTTAAGGGGAAATATCCAACATGTTTATCACATGACTACCTAGTAAGTTGGGAATACTGCAGCCAATGTTAATtggtgatgtgtcctataagaatTGATATTATGAAAGTTTCCGAAAGGATTGTCCGTCAGCAAAAAAAAGTTGTGTAGTGAAAGTTTTCAAAAGCATTACAACCAACCAGAATCAATTGAACCCAGTAATACATAATGCAGCTTTAATATTTGAAAAAATGTATGATTTCTTAGTAGAGTGGGTAAACTGAGCATTATGCAAAGTAGTTAAGGCATGTATGTCAAGGGACTATGTTAcaagagatcatacgtttcctatGTGCAATGTTACCATAAATAAATCTTACAGTAAATATGGACCACATTTCATTTACATGTGTTATGGCAATAAAAACCGTAGTTGGTACATAGGTCATGGTGCAGCAAGTTTGAGGGTAGTGGAGAAGCACAAGTGGGACTTTTTGAGTAAAGTAACTGAGGGCAGAAAAGGATATCAGGGTGCCCAGGAACTTGAAGCTGCTGATAATCTCCATGTACAGTAGATGGGAGAATGGTCAAGTATCACCATCGACTTTTTTTTGCTTACGCTGAGACTGTTGTCCTATCACCATTATGTCAGGTCCCACAGCTCCTTCATGTACTCATGATCACTGGTGATCAGGTGTGCCATGGTAGTGTCGTGTCCATTCTGGGGATACACATTCTTGTGATAATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190416 lncRNA upstream 44196 60800447 ~ 60829029 (+) True G167137
TU190323 lncRNA upstream 203512 60669512 ~ 60669713 (+) True G167059
TU190285 lncRNA upstream 255173 60617769 ~ 60618052 (+) True G167025
TU190250 lncRNA upstream 267363 60605591 ~ 60605862 (+) True G166991
TU190166 lncRNA upstream 323668 60549349 ~ 60549557 (+) True G166907
TU190479 lncRNA downstream 45679 60921116 ~ 60921322 (+) True G167198
TU190485 lncRNA downstream 60816 60936253 ~ 60936489 (+) True G167204
TU190486 lncRNA downstream 61331 60936768 ~ 60936995 (+) True G167205
TU190500 lncRNA downstream 85660 60961097 ~ 60961377 (+) True G167219
TU190508 lncRNA downstream 99554 60974991 ~ 60975297 (+) True G167227
XM_021567391.2 mRNA upstream 6780 60851417 ~ 60866445 (+) False LOC110493059
XM_021567387.2 mRNA upstream 6780 60851418 ~ 60866445 (+) False LOC110493059
XM_021567389.2 mRNA upstream 6780 60851418 ~ 60866445 (+) False LOC110493059
XM_021567386.2 mRNA upstream 6780 60851437 ~ 60866445 (+) False LOC110493059
XM_021567388.2 mRNA upstream 6780 60851437 ~ 60866445 (+) False LOC110493059
XM_021567396.2 mRNA downstream 124140 60999577 ~ 61091420 (+) False LOC110493150
XM_036952286.1 mRNA downstream 124142 60999579 ~ 61091420 (+) True LOC110493150
XM_021567465.2 mRNA downstream 308406 61183843 ~ 61191849 (+) False LOC110493175
XR_005037411.1 mRNA downstream 382279 61257716 ~ 61259025 (+) False LOC118941124
XR_005037412.1 mRNA downstream 382282 61257719 ~ 61259025 (+) True LOC118941124
TU190389 other upstream 6770 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other upstream 6770 60851432 ~ 60866455 (+) True LOC110493059
TU190136 other upstream 357345 60515632 ~ 60515880 (+) True G166878
TU189317 other upstream 920060 59945708 ~ 59953165 (+) True G166131
TU186698 other upstream 2656842 58215677 ~ 58216383 (+) True G163660
TU190578 other downstream 187156 61062593 ~ 61074591 (+) True G167288
TU190618 other downstream 356759 61232196 ~ 61232545 (+) True G167325
TU190863 other downstream 656152 61531589 ~ 61532327 (+) True LOC110510683
TU190931 other downstream 851522 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 1004333 61879770 ~ 61880424 (+) True LOC118936783

Expression Profile