RNA id: XM_021567396.2


Basic Information

Item Value
RNA id XM_021567396.2
length 5009
RNA type mRNA
GC content 0.51
exon number 36
gene id LOC110493150
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 60999577 ~ 61091420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAAGCCTCCCTCCCATCATTTTTCTGTGGGTTATTTTCATCTCGTCGTTGTCAGTGTGACGGCACGTCTGTCTGGTCTGTGCATAACCTGTTCATCTGCTCTGGTATTCCAGAGACCAGGAAGGGATCCTTCACCGCCAGGATGCAGAGAGGAACTACAGTATCTAGATCTTGTGTATGACCACCATGCAACTTTTGATGAATACCTCTTAGAGTGTCGTCTTCGTGGTTGATCGACGGGTCACAGTGATCGAAACAGTGCCTCTTCATTGTGTCATGTTGGAGTCTTTTGAGCTTCTCAACTTCTAACACTAGAAGGCAACACTTCTAACACCAACAGGAGAATGCTGTAGTGCTTTAGGATTGGAAAAAGGAGAGGTTGGCCTGTGGTTTTGAGAGAATGAGAAGATAACGAGAAAGACTTGGGGGATGACAGAATCCCGACTGCGGGTATTTACGGACTCAGAGGAGGACAGTATTCCGGTTCACATATTCAACACAGTCAAAAATGACGTCATGGGGCTTCCACTTCCTTTAGCCGACATGAGAACACTTTCCCCCACAGACTCATTGGGATGTTCCTCGACACTTTCCTGAGGCTTGCTGATCCTGAGgtgcgttgttgttgttttgttgtgtgcTGACTGAGACATTGGAGAGGAGCCATAGATACCACCGGTACAGATGTCTTCCTCAGGCGACACAGTGGGCCCAGGCAGGATGGGACTACTACCCAGGGCTGACACAGTGGACCCTTACAGGATGGGACTACTACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACTGTGGGTCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTAGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGCCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAGGGCTGACACAGTGGGCCCAGGCAGGATGGGACTAGGACCCAAGGCTGACACAGTGGACCCTTACAGGATGGGACTAGGACCCAGGGCCGAGCCAGGTGGAGTAACGAACAGGCTGGGACCCAGAGGGACTCCAGCGGGGCTGAGACTGGGCCTGTGGATCCTGTGTTTCAGCTGGTTCTGCTTCACTGCTCACGCTCAGATGAAGATACCACCTGAGACggtccaAGATTGGGCAAATGTCCTTTCAGTGCAACTACGCGAGGTTACCACAAGATATTCGGGAGCTAACATTCTGCAAAAGAAATTCAGAGATGTAGAGTCCATTATCAAGATAGTGGACATCGATGGGAGAGCCCAAGTGAGGGACTTTTCAGAGGACATAGAGAGAATGCTGGGGTCCAAGATGAAGTCTGTTAAGCGGTTGGCTGAGTCTGCGGAGGATGCAGATTTGTACCACGAGTTCAACAAAACTCTACAGTTTGACTACTATAACTCCATGCTGGTGAACACAATGGATGACGATGGTAACTTCATAGAGCTGGGTGGGGAGTTTCCTCTGGAGGAGAATGAGCATTTCAACAACATCCCAGTCAACACAATGCAGAGTGACGTACAGGTCCCCACCAATGTCTAcaacaaagATCCCTACATCCTCAATGGAATCTACATGTCGGAAGCTTTGAATGACGTGTTCGCCAATAACTTCAAGAAAGACCCCACCCTCACCTGGCAGTACTTTGGCAGCTCCTCGGGTTTCTTCAGAATCTACCCTGGTATCAAATGGACTCCAGATTCAAATGGTGTGGCTGCTTTTGACTGCAGGAACCGTAACTGGTACATTCAGGCTGCCACCTCACCAAAGGACATTATCATTGTGGTGGACATCAGTGGCAGTATGAAAGGCTTGAAGATGACCATTGCCAAACACACCATCAACACCATCCTGGACACGCTGGGGGAGAACGACTTTGTCAACGTCATTGCTTACACTGACTACGTGCGCTACGTAGAGCCCTGCTTCCAAGGCACTCTGGTGCAGGCTGATTTGGACAACCGTGAGCATTTTAAGGTGCTGGTGGACGACCTGCATGTGAAGGGAGAGGGTAAAGTTGCGAAGGCCATGAAGGAATCGTTCAAAATCTTGAACGAGGCAGCGACCAAGGGCCAAGGCAGCCTGTGCAACCAGGCCATCATGCTGATCACAGATGGAGCCATGGAGGACTTCAAGGACGTGTTTGAAGAGTTCAACTGGCCTGATCGCAGGGTGCGGCTCTTCACTTACCTTATAGGCAGAGAGATGACCTTTGCAGACAACACCAAGTGGATAGCCTGCAACAATAAGGGTTACTACACACACATCTCCACTCTGGCTGACGTACAGGAGAATGTCATGGAGTACCTTCATGTCTTGAGTCGACCAATGGTCATCAATCACAATCATGACATCATCTGGACGGAGGCCTACATGGACTCTGTGCTCTTTGCCACAAAGGCTCAAAGTTTACTTCTCATGACCTCCGTGGCAATGCCTGTCTTCAGCAAGAAGAAAGAGACGcTGTCCCATGGGATTCTGCTGGGTGTGGTGGGTTCTGACATCCCCCTGCTGGAGGTCATGAAGCTGGCTCCCAGATATAGGCTGGGTCCACATGGTTACGCCTTCCTCATCACCAACAACGGTTACATCCTGGCACACCCTGACCTGCGACCTCTTTATAAAGATGGTAAGAAGCTGAAGCCCAAGCCCAACTACAACAGTGTGGACCTGGCTGAGGTGGAGTGGGAGGACATAGATGAGACACTAAGGACAGCCATGGTGAAAGGGGAGACAGGCACTCTGTCCTTAAATGTGAGAGCATCAGTGGACAAAGCGAAAAGGCCTATGTTCTTAACAAATGACTATTTCTACACAACCATCAACGACACCCCATTCAGTTTTGGTATGGTGCTGACCAGGGGTCACGGACAGCTGATGTTCATGGGGACGGTCTCTGTGGAAGAGGGCCTGCATGACCTGACGTCCCCTGATCTATCCATAGCCGCTGAGTGGACATACTGTGAGACAGACATTGACCCTCACCACCGCAAATACTCTCAGCTCCAGGCTGTCATTCGCTACCTGCAGGGGAAGGAGCCTGACCTGGAGTGTGACGATGTGCTGCTGCAGCAGACCCTGTTTGATGCTGTGGTGACAGCCCCCTTAGAAGCCTACTGGCAGGCAATAATGCTCAATGCATCTGGGACGGAGGCGGGTGTGGAGACAGCCTTCCTGGGAACTCGCTCTGGCATCATCCGGCTGACCAGATACACCGGCATGGAGACCAGGGTCGCCAAGAAGTTCCTGACTCCAGCGGATAAGGACAACCTGTTCACCATGGACCACTTCCCCCTGTGGTACCGTCTGGCCATGGAGAACCCTCCCGGAAGATTCCTCTACTACATGCCGGTGGAGGACAACGACAACAAAGACAAGACagGGGCGTCGAAGTATGTCATAGCTGTCACAGCTGTGACTGTATCATCGGGAGGCAAGACAGCCATGGCTGGAGCCATCGGGGTGCAGATGTCCTTGGAAATGCTGGAGAAGAGGCTATGGGCCATTACCTTTCAGCCCAATGACACAGATtgtACAGAAGTGGAAGGTGTCTGCCCTCTCACCTGTCAAAGCATTGATGTCAACTGTTTCCTTGTGGACAGCAACGGTTTCATCATAGTCTCGAAAGAGAGGTCAGAGGTCGGACGTTTCTTTGGGGAAGTGGATGGGTCTGTGATGACAGCGTTGATCACGTCAGGCATGTTCAAGCAGGTGTCGCTGTATGACTACCAGGGTATGTGTAGATCAGGACACAGTCATTCCAGTAGTGCTCGGCCTCTGCTCAGTCCTTTCTACGGCCTTGCGGCAGTGATCAAATGGTTCTTTTCTCACATGTTGATGTTCTTAATGGAGTTCAACTTCTGTGGGTTGTGGCACTCGGATTACATTGTAGACGCCAAGGCTGGCTACCATACATCCCATAAAGCCAAGAAGGTTGACGCGCTGCAGCCGTGTGACACAGAGTATCCTGGCTTCGTGTACGATTCCTCCATCAGAGAAACCAACAGCCTCATCAAATGTGGTCGTTGTCAGAAGATGTTTGTGGTGCAGGCGGTTCCTGAAAGTAACCTGGTGTTGATGGTGGTCCAGGCGGACTGTGACTGCTCCCGCCAGTACTCCTCCATCACCCTGGAGCCCAAGGAGGTCAAATACAACGCATCAGTCAAGTGTAACAGGATGAAATCTCAGAAAGTCCGCCGGCGCCCAAACTCCTGTCACGCCTATCATCCTAAGGAAAATGCCAAGGACTGTGGAGGAGCTTCAGAGATCAGCCTATCGGTGGCCGTCTTCTTGACTTCTCTGGCCACTTCATTGGCCCTCTGAAGATGGACATAACAAGGCTCCAGATCTCTTATGGCCGTTCACATTTCCTTtttgtatattttattattttataaaagACCTTTAACTACATAAAGGACCTACCAATACAGTAGTTGAAGTCAATTCCGGAGCGAGGGCTATTTTCTAGTAAGACTCCTTTTCCcacaatgagagagaaagagactcaaCAGTCCAAACAAAAGCCACATTTCTTTGCTTGGGACTCTTTTGCATGAGCCATGGGATATGAACTTGTGGACATGCGATGCAATGAGAGACTGTTATTTTCATGGAGACACTGATATGGTAGGACGAACCCTGCCCTCTGCTGGACAATCCATCTGATTTTTATACACAGTAACATTAAGCTGTATTGtattaaaactattttttatGTTGAAATGAACTACTGTACCAAAACTGTGTGCTATGAAATAGGAATATTCATATTTTTGTGGTATACTTGATGAACATTTGCAATAAATAATGTATGTCATTACATTCGTGTTTAGACCGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190532 lncRNA upstream 3219 60996153 ~ 60996358 (+) True G167245
TU190508 lncRNA upstream 24280 60974991 ~ 60975297 (+) True G167227
TU190500 lncRNA upstream 38200 60961097 ~ 60961377 (+) True G167219
TU190486 lncRNA upstream 62582 60936768 ~ 60936995 (+) True G167205
TU190485 lncRNA upstream 63088 60936253 ~ 60936489 (+) True G167204
TU190597 lncRNA downstream 12315 61103735 ~ 61104351 (+) True G167306
TU190602 lncRNA downstream 17216 61108636 ~ 61109538 (+) True G167311
TU190513 lncRNA downstream 28315 61119735 ~ 61126534 (+) False G167229
TU190515 lncRNA downstream 28315 61119735 ~ 61123969 (+) True G167229
TU190617 lncRNA downstream 39019 61130439 ~ 61193594 (+) True LOC110493175
XR_005034528.1 mRNA upstream 124140 60873225 ~ 60875437 (+) True LOC118937285
XM_021567387.2 mRNA upstream 133132 60851418 ~ 60866445 (+) False LOC110493059
XM_021567465.2 mRNA downstream 92423 61183843 ~ 61191849 (+) False LOC110493175
XR_005037411.1 mRNA downstream 166296 61257716 ~ 61259025 (+) False LOC118941124
XR_005037412.1 mRNA downstream 166299 61257719 ~ 61259025 (+) True LOC118941124
XR_005037416.1 mRNA downstream 219908 61311328 ~ 61312547 (+) False LOC118941126
XR_005037417.1 mRNA downstream 219908 61311328 ~ 61312547 (+) True LOC118941126
TU190389 other upstream 133122 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other upstream 133122 60851432 ~ 60866455 (+) True LOC110493059
TU190136 other upstream 483697 60515632 ~ 60515880 (+) True G166878
TU189317 other upstream 1046412 59945708 ~ 59953165 (+) True G166131
TU186698 other upstream 2783194 58215677 ~ 58216383 (+) True G163660
TU190618 other downstream 140776 61232196 ~ 61232545 (+) True G167325
TU190863 other downstream 440169 61531589 ~ 61532327 (+) True LOC110510683
TU190931 other downstream 635539 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 788350 61879770 ~ 61880424 (+) True LOC118936783
TU192528 other downstream 1693938 62785358 ~ 62785643 (+) True G169130

Expression Profile