RNA id: XM_021567421.2


Basic Information

Item Value
RNA id XM_021567421.2
length 1378
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110493153
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61126098 ~ 61172031 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGCGCGGTCATTGATTCCAGAGTGAGCAGTCTCCTCTCCTTTCCGCTCTGTTAGGGTTGCAGAGAGACACTGGGAAGGAGAGATTAGAATAAGAGAGTCTCCGCTGATTCTGTTTGTTTGAAGgcattcccccccctctctcgctctctctctccatctttctctctctctctctttctttgttgtctcactctctctctcttttctctcttttctctctctctctctctctctctccctctctccctctctccctctgtctccctcagtCTGGTACCCTGTTCAAGAGTGAATACCACAGCCTAAGACATAGGACCATGACTGGGGAACTGAGGCCAAGTCGCCCAAAGGCAGGAACCAAGAGAGCCAGCAGTGAAGCCTTCGGATCTGACTATGACCTGGAGTATGACAGCTATCCAGATGACCTCTACAACAGGGTGTTTGACTACCAGCGTGTCCCAGCCTCCATGATGCCAGCCCCAGTGGAGCCCAGCCCTTTGAAACACTCCCATggcccctcttcctcctccggcCTGCACCGCTCCagagacagactacagggcaAGAGGAGTACTCAGCGCACCGGCTCTTCCAGCAACAGGGCTAAGTtgAAGCTGGCAGAGCTGTTGGCCATAAAGAGTGAGTTGACTCTGATCAAGGTGCAAATTGATGGACTGCTGGACAGTGTGGAAAAGATGGACAGACGGAGAAAAGATCACTCAGATTCACCTCTGACCGGGGAGGGCAGTGTGTCGGACTCAGTGAGCAGTCTGGACGACTCCCCTGTCAGCCTtcaccacagacagagagagagcccagAGCCAGGAGAGGCCAGCGATGAttaccaccagcaccaccacaggATACATAACCATCATTCTGATCTGGAAGATAACATGTGAGGAGATCAGGTATACATGGCTAATAAAGACTCAATGAACCCAATGACAGCAGCACAGCGACATGGAGAGGGATTCAAGTGAAGAGGAGTGATCATCTCTGATCACAGTCAACTTGGACAGAACCCTCAAATACACTGTACCTTACAAAGTTGGATCTTCAGTGAATCTTTTCTTTTGATGAGTAAGAAATATTTCCCTGGTTACCCTCAGTTCCTTTCCTACAGTAAGCTTCTGTCCACCTTCGTGTCTCCAGCTCCCCTTTGTAACAGGTTCCTACAGACTTATGGACTCAACAAAATATggcagctttaaaaaaaaatgtgtggtcTCTTGAAGAATGGGTCTGACAACTGATAtgcatcacacagacagacacacccacatttatacaactacagttgaagttggaagtttacatgcacttaggttggagtcattaaactcgtttttcaaccacttcagaaatttcttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191279 lncRNA downstream 2350 61119831 ~ 61123748 (-) True G167938
TU191258 lncRNA downstream 28507 61055844 ~ 61097591 (-) True G167922
TU191175 lncRNA downstream 188869 60936974 ~ 60937229 (-) True G167845
TU191174 lncRNA downstream 190363 60935472 ~ 60935735 (-) True G167844
TU191172 lncRNA downstream 196231 60929652 ~ 60929867 (-) True G167842
TU191336 lncRNA upstream 23393 61195424 ~ 61195689 (-) True G167994
TU191351 lncRNA upstream 58322 61230353 ~ 61230592 (-) True G168009
TU191368 lncRNA upstream 87038 61259069 ~ 61259943 (-) True G168024
TU191386 lncRNA upstream 96535 61268566 ~ 61269018 (-) True G168033
TU191379 lncRNA upstream 118118 61290149 ~ 61294920 (-) False LOC110493186
XM_021567412.2 mRNA downstream 10107 61098791 ~ 61115991 (-) True LOC110493152
XM_036952293.1 mRNA downstream 66125 61044253 ~ 61059973 (-) True LOC110493151
XM_021567393.2 mRNA downstream 226578 60888793 ~ 60899520 (-) True zgc:172145
XM_021567392.2 mRNA downstream 242856 60881396 ~ 60883242 (-) True LOC110493125
XM_021567381.2 mRNA downstream 275535 60835157 ~ 60850563 (-) True LOC110493006
XM_036952330.1 mRNA upstream 18649 61190680 ~ 61232603 (-) False LOC110493154
XM_036952324.1 mRNA upstream 18649 61190680 ~ 61232604 (-) False LOC110493154
XM_021567446.2 mRNA upstream 61002 61233033 ~ 61249805 (-) False LOC110493155
XM_036952339.1 mRNA upstream 61002 61233033 ~ 61250411 (-) False LOC110493155
XM_021567441.2 mRNA upstream 61002 61233033 ~ 61250699 (-) False LOC110493155
TU191197 other downstream 151077 60974762 ~ 60975021 (-) True G167866
TU191030 other downstream 385747 60735971 ~ 60740351 (-) True G167706
TU191049 other downstream 447057 60678723 ~ 60679041 (-) True G167723
TU190177 other downstream 576919 60540189 ~ 60549179 (-) True LOC110492890
TU190135 other downstream 610576 60515226 ~ 60515522 (-) True G166877
TU191365 other upstream 82481 61254512 ~ 61256015 (-) True G168021
TU191382 other upstream 119108 61291139 ~ 61300092 (-) True LOC110493186
TU191442 other upstream 318403 61490434 ~ 61491671 (-) True G168078
TU191507 other upstream 343206 61515237 ~ 61515656 (-) True G168141
TU193660 other upstream 1974743 63146774 ~ 63150851 (-) True LOC110493507

Expression Profile