RNA id: XM_021567465.2


Basic Information

Item Value
RNA id XM_021567465.2
length 4331
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110493175
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61130439 ~ 61193594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGGGGAGAAATGTGGCATCTGCTCTCTAAAAAAAGTAGAGGAGAAATGTTTGCTGTGTTTACTGTTCAGATCGCTGTCATGTTTGAATGAGTCTTACTCTTGTAATTGAAAGAGCATTCATTTATATTTGTAGGCTATTATATTTAAACAACTAAAAACTGTAGGCTATATTAAGGTAACTTATTTTAATTGGtttattttgttattgaccaagaatccaggtgaaagtgtGAAgaggatttttttccccccatgatGATGAATCAGTttagtgttgttatggtgattTGGGGTTTGCATCATCTCTACGTTGCCCATGGCCAGGACTGCGCGTCGAGGCAGGAGCTGCAGAGCTCTCTGCACCAGGTGGAGAAGTTGCTGTCAGCCCAGGAGGCCTCCTACCAGCAGAGCCTTCGCTCCCTGAGGAAGAGACTGAATGCCCTAATGAACAGCAGTACCGTCAAACACACCACCAAGGCGCACAACGcCACCTGTCCTAAGCCTGAGAGTCTGGCTTACGGCAGGAGACTGGGGAGGGTGTTTGGTGTGGGCCACGAGGTGCACTTTGTGTGTAAGGCAGGTTATGAGCTGCTAGGGCCCCAGACCAGAGTGTGTCTGGCGTCTCTGAAGTGGAGCGGCCAGCAGCCCACATGCAGGGTCTTAAACACTGTGAGCAACATCCCCGCCGCCCTTCCCACGCCGtcctacttctcctcctcctccccctccccctcatcctcctccatctctacgtcctctgcccccctctcggCCTTCGTTCGTCCATCCCGCTGCACCCAGTTCCAGGGCTCCTCCCACTGCATCTGTGATGCAGGCTTCACCATAAGCGGCCGCGACAGCGACATCTGCACAGACATGGATGAGTGTCAGCTGTTTCCGCTGGCACAGCCTGGGCGCCTGTGTATGCACACCTGTATCAACACCCCTGGCAGCTACCACTGTGTGTGCCCTAGCGGCTACAACCTGGCCAGAGACAACCGCAGCTGCAAAGATATTGACGAGTGTGAGAGCAGACTTCACAACTGCACCCTggaccaggtgtgtgtgaatACGTACGGGGGGTTCCAGTGTGTGCAAGTGGAGTGTCCTCGCATCACAAACGCCACGTACATCAAGACCTCTCCCATgcGGTGTGAGAGGAACCCGTGTGTGGTGGGGGACAAGGCCTGCACCCAGGCTCCCAACTCCGTCTCCTTCCACTTCATGCCCGTGGTCTCCAACATGTCCACACCAAGGGTGCTCTTCCGGGTGTCTGCGGCCCGTGTGCTGGGTGACACGCTGCGCTTCGGCCTGCTGGGGAGTCGCGGCCGCAGCCACTTTAGCATGCAGCGCTCTGGCAGGCAGACGGGCACCCTGCTCCTGGTGAGCCCTCTGCAGGGCCCAGCTACACTGGAGGCAGAGGTAGAGATGAGCGAGCTGGAGAGACAAGCCCTGCTGGGACGCTACCTCACCAAGGTCACCCTTTTCGTCTCCCCCTACGGTTTCTAGAGTGATGGaaaggaagaagggaggaggagggggtgatgAGAGAGCACTGTCAGGTGTGGAACTGGAGGAACTGGATAAACATTCCTCAGGCTTTAGGCTGCTCCCTTGTTATCACCTTGGAGAATTTTAGGTATTTGTATGAGTAAACCAGAATGGTTCGGTGTGTTTAATTTCAGTGGGGAATACAATGTGTTTCTTTGGGCTATGGAATCTGTAGCTCTAATATCAAAGGCAGACCACCACATCAGCTATAATGCATATACATGAGAAATGTATTAAGAATTTCAGTATTTTAGTGgtctatattaaatgttttgtacatGTTCGGTTTTGTGTAAGGTATTTGTGATTGCAGGTCCTCTTCAAACTATATGTACTGTACCTTCATTTCTCAGTTGTTACCATTTTGGTTTATTGGACATTTCCTGAATAGTTCATAGAATAAAAATGGATCCATTTACCAATAGAGCATGCAATGCTTCAATGTGCATGTAATCAAACATCATATTGTATGCCAGGGCTACATGGATGAGACACTTGTCCCACTCACAAGGGTATTGGGGCTGTCTTGGCCAGCTGATCGATGAGCGTTCAATTAAAACGTTCCACCATCCCATCACATTGCAGATGATAGGGGCTGGTCCTGGTTTTCTTAACTCCCAGCAACTGGCAAATGTCTCCATCCACCATCCAAAGAACACTCAAACTACAATATCTAAAAAAGTCCTATACGGTGCACCTGATCCTTACAGAGTGTAAACTACCTATCCATCCACCCATGTATGCAGAGGAAGGCAGAGTGGGGTGGTTTTGAACTAGGCTGGAAAAAATGTAACACTCCAGTGTCAGACAGCAAACACAGGATCGGTCCCAGTCTCTGGCCTCCACACGGTCATCTACCCATCCATCTGACCATGACTGGAAGCAGCTGGAAATAACTCCTACATgcgtgtacatacatacacacacacatatatccaGAATGTCACAGGTCAGTACTTCAGATGGTCACGAGGCTAGTCTACATGGGGAATGGGACATAATTTATGTCTGTGTATTCTGCATAAGGCCCTTCTTTGTAGAAATGATTTTATTGGGAGCTGTATTATCCAACTCGGACTACTGGAGCAGGTTGAGGTTGGACACATGAAGGGTTAACCACATGCAAGCAGACGAGTAGAGCACAAAGCAAAGAAGCGTGTTCCCTACAGACATGTAATTCCCTaatcatatttaaacatttgagcaattcagcagacgctcttattcgAAGCAGCAAtgttttggttactggcccaataatcctaaccactagtctacctagcCGCCTCATGGCCTGAGACCACCTCTGGCATTCTTGGTATTCATCCTGAATGTAGTTAGCTACCTTGAATGGCCAAGTCTAGTATAGTCAGGCCCACAGAGCACTGGGTGTGCTTCAGAATTGTTTATCAAACCTGGCTTCTCGTAGCCATAGACTAGAGGATTTGTGTGCGACGGGCTGGAATGAACACAGATCCTTCCTTGTTTGGAACCTAATCTGAGTGGTAATGTAGGTTAGTGTTCTTTTGGGAGACTGGCCAGCCCTATaacctccctcctgtcctgactCCTGTCAGTCCTGTGCCTACAAAACAGTGGACAACATTATAAAAACCGGCAGACTTTATTAACAAATTGTCCAACTTCATCGGTATAGGACAGAACTTAAAACCAGGGAAATGCACTGTTATTCTGTGACATGGCATAATCAGAGATGAAAGCAAAAGGACCTCCATACATTTATACAcaagaacataattacaaaacatattttatcatCATAATCTTAATCATATGTTATAGTCATtgttatagtaatttaattttgACTGGATGAAAGCTTTTGACAGACTAAATTAACAGTAAGTATTGATAGATTGAACTACTCAACAGAATTCAATGCTGTCTTGAGACAGGAGCgctggtataaaaaaaaaataaagttcTCCCAAACTAGGTGTCTTTGTTGGAGTGTTTCCCTTTCCCAAGTCTGGCGTGTGACAGCTTTGAGGGGCGCATGTACACACACCTCTGCTCAGTTTGAAGGGGAGTTAAGAGTAGGCTAGCGgcttctagtgtgtgtgtgtgtgtgatatatatatattaatgtatgtggggGATCCCCATCTGGGATTTTCAGAGTAGGCACACATTGACAAATCTACCTTTTGCATGGTTACAGCGGAGGCCATTTAAATTACATTTATCAATTGTTTTTACAAGCAAGGAGGGAAGCGCTCACAGCTCACACCAATTCAAGAACAAGGCAATGACATAGTAGCAATGAGGGGAAAACTCTACAGACTCATTTACATGGCATGACAGTTTGTTTTGAGAAAGCGATTGTTGAATCATCATGAGAACGTGTTTGAACTCCTCCTTGAGAGGGCTTTCCTCTGTTTGGATTGGTTAAAGTTTAGATCCCACCTGAACAAGTACTTTAGAGTTCAGTAACTAAAACCGAGCCAAGACACTCCTGGAGTGACAACATCCAGCCCCTCCCCCAAACTCGTCCCCAGCACCACCCGCTTCCCTTAACCTAGCCTCAGCTAACAGGCTTCGCTCAAAGGTAAGGTGAAAGGCTGTGGCTACTCTTAACCTGGTCTAACAACAGGGTACTTCACAGGCAATGAAGAAAAAGGCAACAAGAGAACAATCAAATCAAAAAAGGACTCACCAACTTTGACCATTAGTAAACAAATAAATAAGGCTATGAGCAAAcaatatcaatatatatataaatatatatatgggtattggtatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190513 lncRNA upstream 57309 61119735 ~ 61126534 (+) False G167229
TU190515 lncRNA upstream 59874 61119735 ~ 61123969 (+) True G167229
TU190602 lncRNA upstream 74305 61108636 ~ 61109538 (+) True G167311
TU190597 lncRNA upstream 79492 61103735 ~ 61104351 (+) True G167306
TU190532 lncRNA upstream 187485 60996153 ~ 60996358 (+) True G167245
TU190665 lncRNA downstream 4053 61195902 ~ 61196235 (+) True G167365
TU190625 lncRNA downstream 24809 61216658 ~ 61219639 (+) True G167326
TU190681 lncRNA downstream 39237 61231086 ~ 61231311 (+) True G167381
TU190627 lncRNA downstream 46561 61238410 ~ 61244489 (+) True G167328
TU190699 lncRNA downstream 59014 61250863 ~ 61251082 (+) True G167397
XM_021567396.2 mRNA upstream 92423 60999577 ~ 61091420 (+) False LOC110493150
XM_036952286.1 mRNA upstream 92423 60999579 ~ 61091420 (+) True LOC110493150
XR_005034528.1 mRNA upstream 308406 60873225 ~ 60875437 (+) True LOC118937285
XM_021567389.2 mRNA upstream 317398 60851418 ~ 60866445 (+) False LOC110493059
XR_005037411.1 mRNA downstream 65867 61257716 ~ 61259025 (+) False LOC118941124
XR_005037412.1 mRNA downstream 65870 61257719 ~ 61259025 (+) True LOC118941124
XR_005037416.1 mRNA downstream 119479 61311328 ~ 61312547 (+) False LOC118941126
XR_005037417.1 mRNA downstream 119479 61311328 ~ 61312547 (+) True LOC118941126
XM_021567588.2 mRNA downstream 285262 61477111 ~ 61479816 (+) True LOC110493325
TU190578 other upstream 109252 61062593 ~ 61074591 (+) True G167288
TU190389 other upstream 317388 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other upstream 317388 60851432 ~ 60866455 (+) True LOC110493059
TU190136 other upstream 667963 60515632 ~ 60515880 (+) True G166878
TU189317 other upstream 1230678 59945708 ~ 59953165 (+) True G166131
TU190618 other downstream 40347 61232196 ~ 61232545 (+) True G167325
TU190863 other downstream 339740 61531589 ~ 61532327 (+) True LOC110510683
TU190931 other downstream 535110 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 687921 61879770 ~ 61880424 (+) True LOC118936783
TU192528 other downstream 1593509 62785358 ~ 62785643 (+) True G169130

Expression Profile