RNA id: XR_005037411.1



Basic Information


Item Value
RNA id XR_005037411.1
length 715
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC118941124
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61257716 ~ 61259025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTCTTAGCATTTCCCGGGGTGGGGTCATTTATAACTTGTCAAAAATATTTTTATGACCAAATTCACATTCTTTAGTGTAGACATACATCTTTGTATGATTTCATGACTGTTTGGTAATAGATCCCTGAATGGTCAAAACCTCTTCAAATAGAAGTATGTTTGTAGCACAAAATATCTTACATGTAGGCCATCTTTCACTCTCCCATCATGTCACAAGCGAACAGGCTCCCAAAGGCAGGGCCATAAAAGGCCcttgcccctcccctctccaacagccATCAGCCCAGAACAGCATGAAGACAAAACAGCTAAAAGATAATCTGGGAATCCTTCCTTCCTCATTAAGTTTTTGAAGgaaaAAGACAAAAGACATAACATTGACTCCTGAGTGTTGAACCTTTCCCCACTCTACAGCCACCCTGGTTATTACATGACCCTGAGGGTCATCTACGAACATTGGAACATATTGAATAACAATAAGTGGCACATGTACTCTTAAATGTCCACACAGCACAGCCCTCGGAGCATGGTTCCTCTATAATTTTGTTCCAAGGTTTAACCAAAACCTTAACATGACTACTTGCAATTTCATTATTATTCGTCACCATGCATCAATGATTGAATTGCGTTCTTTTTCTTTGCACATGCGCCAAGCTTCCAATGGCTGGAGCCAAGCAATATGGTACATGAAAAAGACCCAAATAAAACATATGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU190699 lncRNA upstream 6634 61250863 ~ 61251082 (+) True G167397
TU190627 lncRNA upstream 13227 61238410 ~ 61244489 (+) True G167328
TU190681 lncRNA upstream 26405 61231086 ~ 61231311 (+) True G167381
TU190625 lncRNA upstream 38077 61216658 ~ 61219639 (+) True G167326
TU190665 lncRNA upstream 61481 61195902 ~ 61196235 (+) True G167365
TU190704 lncRNA downstream 2458 61261483 ~ 61261772 (+) True G167402
TU190466 lncRNA downstream 31124 61290149 ~ 61292412 (+) True G167185
TU190760 lncRNA downstream 123053 61382078 ~ 61415147 (+) True G167455
TU190795 lncRNA downstream 159775 61418800 ~ 61419020 (+) True G167487
TU190801 lncRNA downstream 165941 61424966 ~ 61425207 (+) True G167493
XM_021567465.2 mRNA upstream 65867 61183843 ~ 61191849 (+) False LOC110493175
XM_021567396.2 mRNA upstream 166296 60999577 ~ 61091420 (+) False LOC110493150
XM_036952286.1 mRNA upstream 166296 60999579 ~ 61091420 (+) True LOC110493150
XR_005034528.1 mRNA upstream 382279 60873225 ~ 60875437 (+) True LOC118937285
XM_021567388.2 mRNA upstream 391271 60851437 ~ 60866445 (+) False LOC110493059
XR_005037416.1 mRNA downstream 52303 61311328 ~ 61312547 (+) False LOC118941126
XR_005037417.1 mRNA downstream 52303 61311328 ~ 61312547 (+) True LOC118941126
XM_021567588.2 mRNA downstream 218086 61477111 ~ 61479816 (+) True LOC110493325
XM_021567598.2 mRNA downstream 240071 61499096 ~ 61509316 (+) False LOC110493335
XM_021567607.2 mRNA downstream 240071 61499096 ~ 61509316 (+) True LOC110493335
TU190618 other upstream 25171 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 183125 61062593 ~ 61074591 (+) True G167288
TU190389 other upstream 391261 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other upstream 391261 60851432 ~ 60866455 (+) True LOC110493059
TU190136 other upstream 741836 60515632 ~ 60515880 (+) True G166878
TU190863 other downstream 272564 61531589 ~ 61532327 (+) True LOC110510683
TU190931 other downstream 467934 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 620745 61879770 ~ 61880424 (+) True LOC118936783
TU192528 other downstream 1526333 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 2561436 63820461 ~ 63830320 (+) True G170131

Expression Profile