RNA id: TU191393


Basic Information

Item Value
RNA id TU191393
length 541
lncRNA type read_through
GC content 0.46
exon number 5
gene id LOC118941125
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61306910 ~ 61361520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgctgaatggagTGCTCACACGACACCCAAACATTAGTTTGTTTATGTTTCTCCAACTGTACCATGGTAATGAATGTGTCCGGAGTCgggaagagacagacagcctgcatttctcagccagtcgaaatcatgaatcacctgctatcatttttatggatatatacaaagaaatgtcaattgaaaaaaggGTTATGCTGCCATCCCAGAAGAGGGCTCTGTTCCTCGACCCAATGGGGGAAAGTGCCGGAAAGATAAAAAGATGCCAGGATCATtcctgagagagaaggggggtaaaATCTCCAAATGGGcgtgtggtacccttcctcacccaTGCCAACAAGAGGCTACTTCTTGTGGAGTCTTTGCCTTGAAAATTGGTTGTGACTGCTGCCCACGATGGTTTAACCAGTCCTGTATGAAAACCATCCCATAATTGGAGGATTATGTCTGCGCTGCCTGTCAGGACTAGGTTAGCCTTGAGTTCCAGGCGACGGTATCACCtggaaaactttccataaaaagtgGACTAAATGTTCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191379 lncRNA downstream 12227 61290149 ~ 61294920 (-) False LOC110493186
TU191386 lncRNA downstream 38129 61268566 ~ 61269018 (-) True G168033
TU191368 lncRNA downstream 47204 61259069 ~ 61259943 (-) True G168024
TU191351 lncRNA downstream 76555 61230353 ~ 61230592 (-) True G168009
TU191336 lncRNA downstream 111458 61195424 ~ 61195689 (-) True G167994
TU191465 lncRNA upstream 55143 61416663 ~ 61416891 (-) True G168099
TU191474 lncRNA upstream 69193 61430713 ~ 61431023 (-) True G168108
TU191495 lncRNA upstream 133712 61495232 ~ 61495725 (-) True G168129
TU191498 lncRNA upstream 136887 61498407 ~ 61498825 (-) True G168132
TU191499 lncRNA upstream 146614 61508134 ~ 61509299 (-) True G168133
XR_002469105.2 mRNA downstream 3640 61292087 ~ 61303507 (-) False LOC110493186
XM_021567472.2 mRNA downstream 3641 61292087 ~ 61303506 (-) False LOC110493186
XM_036952415.1 mRNA downstream 3856 61292087 ~ 61303291 (-) False LOC110493186
XM_036952417.1 mRNA downstream 3856 61292087 ~ 61303291 (-) False LOC110493186
XM_036952425.1 mRNA downstream 24601 61269393 ~ 61282546 (-) True LOC110493207
XM_021567519.2 mRNA upstream 8787 61370307 ~ 61415198 (-) False LOC110493250
XM_021567516.2 mRNA upstream 8787 61370307 ~ 61415302 (-) True LOC110493250
XR_005039489.1 mRNA upstream 9568 61371088 ~ 61371201 (-) True LOC118944178
XR_002469111.2 mRNA upstream 19028 61380548 ~ 61382206 (-) True LOC110493274
LOC118936773 mRNA upstream 55980 61417500 ~ 61428467 (-) True LOC118936773
TU191382 other downstream 7055 61291139 ~ 61300092 (-) True LOC110493186
TU191365 other downstream 51132 61254512 ~ 61256015 (-) True G168021
TU191197 other downstream 332126 60974762 ~ 60975021 (-) True G167866
TU191030 other downstream 566796 60735971 ~ 60740351 (-) True G167706
TU191049 other downstream 628106 60678723 ~ 60679041 (-) True G167723
TU191442 other upstream 128914 61490434 ~ 61491671 (-) True G168078
TU191507 other upstream 153717 61515237 ~ 61515656 (-) True G168141
TU193660 other upstream 1785254 63146774 ~ 63150851 (-) True LOC110493507
TU194598 other upstream 2598003 63959523 ~ 63963821 (-) True LOC110501772
TU194766 other upstream 2804443 64165963 ~ 64168398 (-) True tmem117

Expression Profile