RNA id: XM_021567577.2


Basic Information

Item Value
RNA id XM_021567577.2
length 3165
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110493282
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61436215 ~ 61464302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACGTTGTACCCACATTAGTAGAACGTTCATCATTTGTGTGCGGAAATGATTAGGTTGCAGAGAGGTCAGAGGGTAAAGGCTATTCACCCAGGACTCTCGATTGTAGAATACACAGCCATCTTGGATCTACGAGCAGAAGGGAAATTAATGCGGTGACAAACGGAATGTTCAGTGCTACGAGAAAGAAGTTTGTAGAGGGGGTCGAAAGTGACTACCCTGATGAGGGCATGTACTACAGCCAGCCGTTGCCGTTCTCACATAGGTCGGACAAAGACTTAAGCGCTCTGTCTGCTCGATCACACGTCCCTAGTACAGCTCCCTTTGAACTTGAAATGCTCTCGTCTCCCTCACCGTCGTCATCAGGTCAACTGTCCCAGCTTGGTGCCAGTTTATACGGCCCACAGAGTGCACTAGGCTTCTCGATAAGGGGCATGGGAAACAACACTCAGTTAAACCGCAGCTTAACACAAGGCACCCAGCTACCGAGCCATATCACCCCCACCACGGGGGTGCCCACCATGTCCCTCCATACCCCGCCCTCGCCAAGCAGGGGGATCCTGCCGATGAACTCGAGGAACATGCTGAACCACTCCCAGGTGGGCCAGGGCATCGGGATGGTCAGCAGCAGGACCAACAGCATGGGCAGCTCAGGGCTGGGCAGCCCCAACCGCAGCTCCCCCAGCATCATCTGTATGCCCAAACAGCAGCCTGCACGGCAGCCCTTCACCATCAACAGCATGTCAGGATTCGGGATGAACCGGAACCAGGCGTTTGGGATGAACAACTCGTTATCAAGCAACATCTTCAATGGCACAGACGGTAGTGAAAACGTGACGGGGCTAGACCTGTCCGACTTCCCTGCTTTAGCAGACAGGAGCCGGAGGGAAGGAAGCGGAAACCAAACGCCACTTCTCAACCCACTAGCTGGAAGGGCCCCCTATGTTGGCATGGTGACGAAGCCATCGAATGAGCCGACGCAGGATTTCTCCATCCACAACGAGGACTTCCCTGCACTGCCTGGTCCCAACTACAAGGACCCCACGTTGAGCAATGATGACAGCAAGACAAACCTAAACTCTACAGGCAAGAGCACGTCCAGTGCAGATGGGCCTATGTTCCCCGGAGACAAGACGACCTCAGCACAGAACAACAACCAGAAGAAAGGGATCCAGGTGTTACCTGACGGGCGGGTGACGAACATTCCCAGGGGAATGGTGACGGACCAGTTTGGAATGATCGGCTTGCTGACATTTATTCGAGCGGCGGAGACGGACCCAGGCATGGTGCACCTGGCACTGGGAAGTGACCTCACAACATTGGGACTTAACCTCAACTCTCCAGAAAACCTGTACCCCAAGTTTGCTTCCCCCTGGGCATCAGCACCGTGTCGACCTCAAGACATTGACTTCCACGTCCCGTCTGAGTACTTAACCAACATTCACATACGGGACAAGCTGGCAGCTATTAAACTGGCTCGTTACGGTGAAGACCTGTTGTTCTATCTGTACTACATGAACGGAGGAGACCTGCTACAGCTCCTGGCAGCAGTAGAGCTCTTCAACCGGGACTGGCGGTACCACAAGGAGGAGCGGGTGTGGATCACGCGGGCGCCGGGTATGGAGCCCACACTAAAGACCAACACCTACGAGAGGGGAACCTACTACTTCTTTGATTGTCTTAACTGGAGGAAGGTAGCCAAGGAGTTCCACCTGGAGTACGACAAGCTAGAAGAGAGGCCCCACGTCCCGTCTACCTTCAACTACAACCCAGCCCAGCAGGCCTTCTGAGGCCCAAGTACAGTATAGTCCCAGGGGTACTGCTGTCCCTGCACCCCTCCCTCCCAGCCTGAGGAAGGTGCTGTGGCCCAGGCATCCATCCTGGTTTTTATTCCTTGAGGGTCTGGTTAAAAGGACTGCAGAGGAGGTCCTCACCACTGCATAAGGGTGGGGAAAACTGAGCCCTACCTTTCCCAAATTATGTGCTGCCCAAACACCTACACTTGTTCTGTTTTTATTCCtttaatgtccttgttttttgagGTGGGAGTTGAGCAGGGTCTGTGTTTTGTTTACCTCTGAATCAGAAGACTGACTATACCGGCACACTTTACAGTGACAAAACAAGGGTTATGACACATTTTTTCATCAACAAAAAAGTGACAAAGGCGGGGAAGGCTAAACCAACAAGTACCATCCCACACGTGAGAACGAAAGGGGCCGGAAGAAATGCAATGTTCGTTGTTGCACTATTTAGTAATAAAAGAACACAAAGATTGTTTGTGCTTTTTTATGTGAAAACACTCCCTCCTGTTTTGTTTTGTAAAGATCAGCAGCCTgtctacacctctctttctatctctcctcttGTACATTCCCTCTTTTCTCCTCAACCGGCCCCACATCTTTCTTTCCTTTTGACGGGTATTTTCTGTCTGGCTTCAAAATAGACACAGATCGGATACTTTTTTAGTGAATGTTCTCACAACCTGTGGACAACCCGTACAAGGGTTGTTAGAATACCTACCCAGCTTCATTGTTCCAGAGCAAGCAAAACACTTTCCAGTCTTTGTTACGATTTTGTAATAaacgtgtaaaaaaaaaagtatttttatgtttgaacaTCACATGAATACTGATATGTATGTATGAATCtgtatgtattatatattatatatatatatgtgtgtgtatatatatatatatatatatattatatatatatgtgtatgtgtgtatatatatatatatgtatatatattttggaGAAAAAAATTGCTCTGCCTTGTACCTCGTTTTTAGGAGGTCAGCGTGGATGCAATATGTGGATAAAATAGGACATTTCTGTATCTGCTGGACAGGGCGTCGCACTCGGCGCCGTGAGCACTTACGACGAAgaattacaaataaaaaagaCAAACAAGGAAATACCTGATTCTTCTGAGCTAAAACAAGGAAATCCACCCCCTAAACAAACCAACTAATCAGTCCAAAGCAAGAGGACAGACGGACACATTTCACTTAAAGCTGTTTAAACAGCAGCATTTCGTAGGAAATGGAAAAGTGAATAATTTTAAGAATAATGAATACAGATCAATCTTGAATTTTCTGACGTTCAAAGCCTCTTTTCTTTGTAATAAAGCGGAAAAGGCTTTCCTGAACTACAA

Function

GO: NA

KEGG:

id description
K12605 CNOT2, NOT2; CCR4-NOT transcription complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191474 lncRNA downstream 5192 61430713 ~ 61431023 (-) True G168108
TU191465 lncRNA downstream 19324 61416663 ~ 61416891 (-) True G168099
TU191393 lncRNA downstream 74695 61307147 ~ 61361520 (-) True LOC118941125
TU191379 lncRNA downstream 141295 61290149 ~ 61294920 (-) False LOC110493186
TU191386 lncRNA downstream 167197 61268566 ~ 61269018 (-) True G168033
TU191495 lncRNA upstream 30930 61495232 ~ 61495725 (-) True G168129
TU191498 lncRNA upstream 34105 61498407 ~ 61498825 (-) True G168132
TU191499 lncRNA upstream 43832 61508134 ~ 61509299 (-) True G168133
TU191505 lncRNA upstream 48599 61512901 ~ 61513251 (-) True G168139
TU191509 lncRNA upstream 54565 61518867 ~ 61519213 (-) True G168143
LOC118936773 mRNA downstream 7748 61417500 ~ 61428467 (-) True LOC118936773
XM_021567516.2 mRNA downstream 20913 61370307 ~ 61415302 (-) True LOC110493250
XM_021567519.2 mRNA downstream 21017 61370307 ~ 61415198 (-) False LOC110493250
XM_036952527.1 mRNA upstream 703116 62167418 ~ 62217631 (-) False mon2
XM_036952531.1 mRNA upstream 703116 62167418 ~ 62217631 (-) False mon2
XM_036952538.1 mRNA upstream 703116 62167418 ~ 62217631 (-) False mon2
XM_036952541.1 mRNA upstream 703116 62167418 ~ 62217631 (-) False mon2
XM_036952533.1 mRNA upstream 703116 62167418 ~ 62217632 (-) False mon2
TU191382 other downstream 136123 61291139 ~ 61300092 (-) True LOC110493186
TU191365 other downstream 180200 61254512 ~ 61256015 (-) True G168021
TU191197 other downstream 461194 60974762 ~ 60975021 (-) True G167866
TU191030 other downstream 695864 60735971 ~ 60740351 (-) True G167706
TU191049 other downstream 757174 60678723 ~ 60679041 (-) True G167723
TU191442 other upstream 26132 61490434 ~ 61491671 (-) True G168078
TU191507 other upstream 50935 61515237 ~ 61515656 (-) True G168141
TU193660 other upstream 1682472 63146774 ~ 63150851 (-) True LOC110493507
TU194598 other upstream 2495221 63959523 ~ 63963821 (-) True LOC110501772
TU194766 other upstream 2701661 64165963 ~ 64168398 (-) True tmem117

Expression Profile