RNA id: XM_021567588.2


Basic Information

Item Value
RNA id XM_021567588.2
length 2706
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC110493325
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61477111 ~ 61479816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCATAGCCCACCCCCCGCTCTCTCCCGTTATGAAGACGGGAAAAGTCATTAAGCACAAATGGGGAGGAGTGAGCAGCTCGTCATTTGCTTTTGCTTGAGAGGCAAAGCTCAGaaccatagacagacagagagagagccaacaGAGGTCTGTGCAAGGGTATGGGAATATCAGCAACACTTTCACTATGTGGGATACAACAATGGCATACCACTATTTGGGGGAACGCTGGCAAACATAATTTGGAAGTCTGTTTTTTGAGAGACCGTCATGTATAATCTCCAGTTTTGTGGGGGTCACAACAGAATTGGCTGATGCATGGACCGGTAGCTTGACATTGGAATTGCCTTTCAGGGTTTCAATCAAGTCGTAAGTTATTCACTCATATAGTGTGATATTTCATGTTTTATTCTTGTTTTTTTCTATAAAATAGCAACAGACTTGACAGCTTATATTGCTAAGTAATCATGAAAGATAAGGAATGGACTTTCCTGGACTTTCTTCCATGAGCCCCTCACTCCTCCCTCACCTCTGTGGCTAAATCAGAGGTGAGTGAGGGGCAGCATCAGGTTGAGGACAGGGTGTTCATGATGGGGAACGTCATGCGTGGCGCTGTGGCCTTCATCCCCTCCGAGCGCTGCCAGCGTTTCCTGGTGGGCGACCTAAAGGAGATGCCTCTTGATCGGACACTAGACCTGAGCAATTTCCAGCTGCGTCGGCTTCCTATGGCTGCCTGCCTGTTCAATGAGCTGGTAAAGCTTTACCTGAGTGGCAACAACCTGAACACCCTACCTGCAGACCTGCAGGACCTGAGGAAGCTGCAGCTCCTAGCTTTAGACTTTAACAGTTTCGAAGAGCTGCCTGCGGCGGTGTGTCAGCTACCCCAGCTTAACATCCTGTATCTGGGCAACAACAAGCTCTGGAGCCTCCCCCGGGAGCTGCGTGAGTTGAAAGAACTTAATACCCTTTGGTTGGAGACAAACCGCTTCATTGAGTTCCCTAGTGTAGTCTGCGACCTCTCCAACCTCAAGACCCTCCATCTGGGGTACAACCAGATAAGCAAACTGCCAATGGAGCTCAGTGGGCTGAAGGAGCTGAGGAGTATCTGGCTAGCCGGGAACCAGCTGTTTGAGTTCCCGCCAGTGTTGCTTGCCATGCACTTTCTGACTGTGATTGATGTGGACAGCAACAACATCTGCCGTTTTCCCGGTCTCTCCCACTTGCAGGGGTTAAAACTGGTAATCTACGACCACAACCCCTGTGTGAACGCACCTGTGGTCGGGGAGGGGGTCAGGAGGGTTGGACGCTGGGCGGACAGCTCAGATGATGAAGAGGATGGTGAGGATGGGTCGAAAGTGTGTGAGACGCTGACTGAGGTGAAGGAGCTTGCCACAGAGCTTGCCTCAGAGGGAGAATTGGACACACTACTTGAAAAGGGTCGTGGAACAATCTGACCTTCAGCCGTGGATAGGCTGGAGAACAGGATGCCAGTCAAGTGGAGCACTTACTGGAGAGCGGCCATTTGTCTCGGCATGTTACACAAGCAGACAGGCCTGATGGTGTTGGCTTCCAAATATGGTAAAGCCAATAATATGGACCTAAACACAGATGACAAATAATAAGCCATTACAATTGGTTTTCCATCATGATGAAACATGGACCTCATGAAAAGCTCCAGGAGAAATCTCACATGAAGTTCTCTATTACATAACTGTCTGCAGACTTGAATGAAATTGTGGCTAGTTTTTAGTTAATTTAACAGGTGATTATCCAATTTAAATAATTTATTGAGTCATGAAGAAATTCTACCAGGTGTCCCTATTCATGAACTTTTGCTGGGGGCAGTATACTGTTTGTATAGCATTGAGTACAGAGCAAATTCTCCTGTGTTAAATCAATACTGACTGTATAAATGTAACACTGGCCATGGCTACACAGGTCCACACTTTTGAGTGTTAAATGAACACTGTGCTTAGTGCTGACACTATTACACTTTGTCAGTGTTAAGGAATTAAAACTTTCAGTGTTGTGCAATAACACCTTATATTGTATTTTTACCCATTACAAGGTCACACAGTTGGGTTAAGGACATTACAATAATGTTTCAAGTCTTTATTGTAACATGCTCTTATGTAAGAGTTTATAAAAACATCAGAACTGGAAGCAGACATGCTCAAATGTTTATTAACATAACTATAGACCACTTAAACTAGTACAACGCTTCCACTCACAGGTGGCCAAAAATACCTAATTGAAAGCCACGTCCCAATAAACCACACCTCAAATAtaatttcccagtgtgccttgcctTTTCGAGTGAATTGTATCCTTAACGCCCATGACTGTATTAGTTAGTGACAGAGGCATCGTTGTTAAATTAATTCTTTTTCAGTCCTGTGGACTTCAAGTGGGTTCCTACTGTAGGCAAATGTTATCATTAAAATGAAACtgtttatgacaatacattacatatatcataAAGACCTTACTTTGACGGCCAAGTTTTACACAGTGGTGTTAGGAACCTCCTGGTTTACaagccacatcaggcctgcaagtcataTTATGCTGGTTTGCTAAATTATATGTAAtttctattggaatccagccagagttaggacAGCCAACAATTTAAAAAATTTATTCACCCGCATCCTGCGCTAATAATGATTATCAGGGTTAGGAACATTGATAAAagagactacc

Function

GO:

id name namespace
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190802 lncRNA upstream 49629 61427177 ~ 61427482 (+) True G167494
TU190801 lncRNA upstream 51904 61424966 ~ 61425207 (+) True G167493
TU190795 lncRNA upstream 58091 61418800 ~ 61419020 (+) True G167487
TU190760 lncRNA upstream 61964 61382078 ~ 61415147 (+) True G167455
TU190466 lncRNA upstream 184699 61290149 ~ 61292412 (+) True G167185
TU190827 lncRNA downstream 17673 61497489 ~ 61498830 (+) True G167509
TU190854 lncRNA downstream 32405 61512221 ~ 61512476 (+) True G167535
TU190858 lncRNA downstream 39349 61519165 ~ 61519535 (+) True G167539
TU190851 lncRNA downstream 40667 61520483 ~ 61525083 (+) True LOC110501762
TU190911 lncRNA downstream 159839 61639655 ~ 61699372 (+) True LOC118941131
XR_005037416.1 mRNA upstream 164564 61311328 ~ 61312547 (+) False LOC118941126
XR_005037417.1 mRNA upstream 164564 61311328 ~ 61312547 (+) True LOC118941126
XR_005037411.1 mRNA upstream 218086 61257716 ~ 61259025 (+) False LOC118941124
XR_005037412.1 mRNA upstream 218086 61257719 ~ 61259025 (+) True LOC118941124
XM_021567465.2 mRNA upstream 285262 61183843 ~ 61191849 (+) False LOC110493175
XM_021567598.2 mRNA downstream 19280 61499096 ~ 61509316 (+) False LOC110493335
XM_021567607.2 mRNA downstream 19280 61499096 ~ 61509316 (+) True LOC110493335
XM_036934053.1 mRNA downstream 40669 61520485 ~ 61525531 (+) False LOC110501762
XM_036952487.1 mRNA downstream 45467 61525283 ~ 61535728 (+) False LOC110510683
XR_005037426.1 mRNA downstream 59049 61538865 ~ 61567852 (+) True LOC118941130
TU190618 other upstream 244566 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 402520 61062593 ~ 61074591 (+) True G167288
TU190389 other upstream 610656 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other upstream 610656 60851432 ~ 60866455 (+) True LOC110493059
TU190136 other upstream 961231 60515632 ~ 60515880 (+) True G166878
TU190863 other downstream 51773 61531589 ~ 61532327 (+) True LOC110510683
TU190931 other downstream 247143 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 399954 61879770 ~ 61880424 (+) True LOC118936783
TU192528 other downstream 1305542 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 2340645 63820461 ~ 63830320 (+) True G170131

Expression Profile