RNA id: XM_036934053.1



Basic Information


Item Value
RNA id XM_036934053.1
length 545
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110501762
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61520483 ~ 61525531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TACACTCCCagtggctgcctggtattgtgacgcaataatttcaatgtttttttggaATTTCTATTCATTCTTATTTCTAAGCCAGTTTAATATTCAGTAGCATTCAAGCTTTGGCAACCTCAGATGAAGTACGATGTTTTACCGGCTCATTTTGGAGAACGAATTAGGCGTGTAGCATGGACTGCGACGACGCCCGAAAAGGGTTACAGGAAGCCCCAGAAAGGACATTCCCTGTATTCTTCAGAGGAAAACTGGGGGAGAAGCTCCATCAGGAGACCCCAGGATTTGACCTGTTGGACCCCAACATGAGAGTCATAGATGTTAGTTATAACTGCCTCCACGACAAACACCTGAAGAGTTTTTTCCGCCATCCGGAAAGGAAGAAGCGGCTGGTGAAGCAAGGCCTCATCACCTCAAATGAGAAGGTGCTGTGTACGTGTAAAGAGTACAATCGCTACAGTAGCTACATCAAGTCAGTTCAGTTGCTGTGGGAGAAGCAGTGCTGTGCCCAGCAGGTTAGAGTGGTCTGCTTTCTAGATGCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU190858 lncRNA upstream 950 61519165 ~ 61519535 (+) True G167539
TU190854 lncRNA upstream 8009 61512221 ~ 61512476 (+) True G167535
TU190827 lncRNA upstream 21655 61497489 ~ 61498830 (+) True G167509
TU190802 lncRNA upstream 93003 61427177 ~ 61427482 (+) True G167494
TU190801 lncRNA upstream 95278 61424966 ~ 61425207 (+) True G167493
TU190911 lncRNA downstream 114124 61639655 ~ 61699372 (+) True LOC118941131
TU190921 lncRNA downstream 148770 61674301 ~ 61729889 (+) True G167599
TU190938 lncRNA downstream 230684 61756215 ~ 61834645 (+) True G167616
TU190944 lncRNA downstream 269049 61794580 ~ 61794870 (+) True G167622
TU190978 lncRNA downstream 377456 61902987 ~ 61903742 (+) True LOC118937286
XM_021567598.2 mRNA upstream 11169 61499096 ~ 61509316 (+) False LOC110493335
XM_021567607.2 mRNA upstream 11169 61499096 ~ 61509316 (+) True LOC110493335
XM_021567588.2 mRNA upstream 40669 61477111 ~ 61479816 (+) True LOC110493325
XR_005037416.1 mRNA upstream 207938 61311328 ~ 61312547 (+) False LOC118941126
XR_005037417.1 mRNA upstream 207938 61311328 ~ 61312547 (+) True LOC118941126
XR_005037426.1 mRNA downstream 13334 61538865 ~ 61567852 (+) True LOC118941130
XM_036952493.1 mRNA downstream 86428 61611959 ~ 61616459 (+) True LOC110517167
XM_036934063.1 mRNA downstream 153418 61678949 ~ 61685871 (+) True LOC118936777
XM_036952503.1 mRNA downstream 173369 61698900 ~ 61699665 (+) False LOC118941131
XR_005037428.1 mRNA downstream 182918 61708449 ~ 61710105 (+) True LOC110491115
TU190618 other upstream 287940 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 445894 61062593 ~ 61074591 (+) True G167288
TU190389 other upstream 654030 60851432 ~ 60866455 (+) False LOC110493059
TU190393 other upstream 654030 60851432 ~ 60866455 (+) True LOC110493059
TU190136 other upstream 1004605 60515632 ~ 60515880 (+) True G166878
TU190863 other downstream 6058 61531589 ~ 61532327 (+) True LOC110510683
TU190931 other downstream 201428 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 354239 61879770 ~ 61880424 (+) True LOC118936783
TU192528 other downstream 1259827 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 2294930 63820461 ~ 63830320 (+) True G170131

Expression Profile