RNA id: XM_036952493.1


Basic Information

Item Value
RNA id XM_036952493.1
length 4381
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110517167
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61611959 ~ 61616459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAACCTTATCTGCTGTGGACGGTCGTGGGCATGTCATCCCTGTCAAACTGACCTTGGCCCCTTTCTCCTCCTTAATCTCCAGCGACGAGACCAAcaccaacctctcctccagcagccTCCCCTCCTCGTGCTCCATCAAGCTTTCAGACAGTAGGAGTGACATTCCTTGCTCCCTGACTGTAAGCTCCATTTCAAATGTTCCTGGACCTGACTCCGGCAGCAGCCCTCTGCGGGAGAATCAATTTGCTACTGAGGTCTCGTCGATCTGCCTCAGCCAAGATAGAAATGGCCAAGGAGGGAGTGTGACACCTCCAGACCCTTTGGATGTTTCCCTCCCCTCCATTATTGAACGGGCTGGCGGAGCTGTATGTTCCGTCATCTCCCAGTCTTTAGCAATTGTGGAGGGGCGGTCAAGTGTGAATGGTGAGGAGGGCTCTCCATCTCCCACCACAGTCTCCCATTCTCCTACAAGGGTGTTTGTCAGCCACTTAAGGAGTAGCCCACTAGGTGAGGACCTTGTAGATTCAACACTTGCGGATGTTATCTCTGTCCTGAAAATGGAGGGAATTATTTCCTTCTCTCCGACTTTGGAGGAGGAGCTGCTTGATCTCTCCTCCAGTTGTTCTTCGTCATCAAGCGAAACACTGCAATGTGTGTCTGTTGGCCCTCTTGGCAGTGGGTCGGAGACGTCCTTCAAACTTCTTGGGGGTCGTACTCTGAGTATCGCCACCCCAACGGCCCATGTTACCACAGAGGACTTAGAAGTCTACAGTGATGAGATCATTGACGAAATCCTTATTATAATGAGGACCAAAAAAGATGATGACAGTGGAAGTGACGTCTCTGGTGCATCAACACCATGCAACACACCAGCACCACAGAGccggttctcttctgcactgagGGGAGTGCTTCCCCATGACAGGAGGATACTCAGCACAACACTGCTTGGAATCCAGAACACACTAGACAGTGAGAACGTCTCAGGAGAGTGTTCCACCTCACCACAGGACAATGCCAGAGTCCTGGAGATGATAAAGTTGCTGCAGAGGCGCCTTGAGGAGACACCCTCAGAGTCCTCCATCCATATCACAGATGTGGCTTCACCCTTGGGCTttcctctccctgtatctctctatgCTGTTCAGTCGTGTGTATTTGCCACTGACAAAGACCTGAAGGCAGAAAGAGTGAAGGGAGTCTTTGAAAGCCTGAGATCCCAGTTTATGAGCTACTCCATCAAGCCTGTGAGTAACATCATTACCAGGGCAACAACAAAGATGGCTGCCTCCAATCAGCTTAGTTCAGAGACCCTCCAGGCAGCATCAGCAAAATCATCTGCTGTGGCTCAGAACCTTATTAGTTCGGTTTTATTTAAAGTTGCCACGGTGTCCTGCTCTGATGACTTAGAGGGTCTGGGTGATCATCTCAGATGCCCCTCAACTTTGACCAGAGTTCTGACACCTTTGACCTCAGAGAAAGCTACACTGACTCCTGCTGTTCTGAAGATCAAAAGGGAGATGTCTAAGGAAGTGGCCACCGAACTCCAGAGTTTCTTGATCAAGGAATCCCTTACTGGCACCCAGACACCATCCAATGGACATGTTTGCACTTCTGGTTCTGCCCCAAGGGAAGCTGTGCGGGACATCCTGAGGAAAACCAAAGAGGAGGCTTCCAACAAAAGCCTGAATAATATTTTCTCTGTTAATTTGGATGAGCGGCTCACAGACTCTATTGCAGATGCCTTATATCCAAAGCTTTATGACCGATTGGAGTCCAAAAGTGAGCTGCAGGCTTCTTATTACAGCTCCCAGATCAGCTGTAGCCTCAGCCCCTTCAAAGTTGAGAGCAGCCTAGAGCTCCAGGAGTTCACTGACCCACTATCTGAGTCAGTATTGTGTCTCCTGGATAGGACATTTGGAGATAAAGCTCAGAACTTAAAGACAGGCGGGGGTGTTTTACAATATGTCACAGACCCAACCTATAAGAAGCTTTTGATTGGACCCCACACCAACGACGTCAATGTGGTTATGCACACGATTGCAGTGGAGGAGTTGCCTGTTGAGGGTTGTATTGCGCAAAGTGAGGCCATTCATGGCCTTCACAAGAAGCAAGAGTTACCTTCCAACACCAGTGGCAGAGGGAATGAGACCCCGAGCCCTACTAATTGTCTACTGGAGGGTGTAGTGGGCAAACTGGTACGGAAGATGCTATTTCAGGGCCTTGACATCCCTGAGGTACCCATGAACTACAGCCGCTCTGAGAACTTTAAGCTACAGAATGAACTGGTGGCAAAGCTTTGTCCTCTGATGGTAAGGACAATCATGGCTACAACCATAGCCAATCAACAACCTACTATTCAAGAAGCAGTGATGTCTTCCGAGAACATCCATGTGAAAGAGCTGTGTGAGGCAGGTATCAAACACCTCAAAGAGAACCATGTACCCGATGACTCTGAGACAAACATCATGGTCAGAGGGGCTTTGAGTGAAATTGAATCCTGTATGATTGAGACCTCCGACAAGGACTCTCCCAGTCTACATTCCACACCAGAGGTGGTTGTAGACCTGATCACCAAGCTGCTTCATGGGTATGAGCTTAACTCAGAGGACTTTGCATCACCTGTGTCATCCCCAACCACCACTCTCTCTGATGTGGCAATGGACATGGTGGTTTCTGTCCTTCGGGACATGTCCGATTCCCCAGACGTTACCTCAGCATTGGAAATGACCAAGGATCTCAAGACGCCGTACTCCCGCCCCTCAAGTGCAAGGATTGTAAGTGCCCTCTGCAGAGAGCTGGAGGAGCACATGGGCTCTCCTGATGCTCTGAGGCGAGCTTTGAGCCGTGGCAGCGGGGAGATGACAACAGCCATTGCGAGTGCAGTCACCAGGGAAGTCAACCGTCTGGGTTCAATTGTACCCAAAGTCTCTATCAGGCCGCTCTCCTCAGACATCTGCCtaaggacagaccaggacaaggtCATGGTTAAGAGCCGATGTGGCTCGGCTGAGGTGAAGGCATCCCAACCGGTGTATATTATTGTTCATGTAGAGGCGGTGATGGATATCATTGTCCGGCTGCGGTCTCTGATTGTTCCTCGGACCCAGGATAAACTGGCCAGCTGGACCCTAGTTGAGGATGTGACCAACAAGCTGTCCAGTGCTCTGTGGGTGAGGGTGACTAACAGGTGGAGGGAAGCAAATGTCTGCCTGAAGGCAACAGACATCTTTCAGTTGGTGCTGTCTGTGCATAGAAAGTTGATGCAACGCTATGGCACAGAGGAAGCCCTACAGAAGATACTGTGCCACAAGGCACCCAAGCTGCACAAGGACATTGTCTGTCTTGTCACGAACGGAATTATGGATGCACCATCCAAACTTCAAAGCACCAAAAATCTGGAATCTACACTCAACTTGAAAGAATTGACAGCCTTGTTTAATGAAATGACAACCCGTCAATCTTTGAATAAGAAAGCTGAGCAGAGCAGCATGAAGACTGAGATTGAACAGTCGGAGTGGTCCACTGTGGAACAAGTGACATCCGGTTCCACCAGCTTCATTAGGGAGCTTATATTAGAAGAAGTCCTGATGAAGCTTGTCAAGAAGATATGCCGTATGCCAAAAAGGATCAACAAGCGTCAGCGCATCCAGATCAGTGATCTGGTGACTGAGCTGATCCGATTGTTCGACGATGAGGTGACCAAATATCTGATTGAGGAAATGGAAAGCCAGAAAAAAAGTTTCAATTCTAAGATGACATCGAAGCTGGCAGATGCCATCTACACTGACCTTGGGAAGGTCAAGCGTTTGAAATGCTCCTTGAAAATTGACGATTTATTTGAGGATCAGGAGATGCtttccattgtctctgtcattGTTTCCCACAAGCTACTGGCCATCTTGAAACCCTCAGTTTCCAACCCATATGACCGTGAGACCTCAGACCTTGAAGACTCATGCAGTAATGATTTGGAGGATGCGGAATCTGAGGGGGTGCATTATGCCACCGGCAGAAAGGTAAGACAAGCTCAGATTACTCTTGAATGGTCATTGGTTGTGCTTTTTGATATCGGCACCAGTAAGTACAGTTGTATAATTATAGGAATATGTAAAGGAAGTGAAATTGAAGTTTAATTGTGCATTCTTGAATTCTAATCACAGTCCAACATGAGCATCGTCCTTACAGACACTACAAACCAGCCAGAGATGTACATTGCTGTGGATTCTACACCTATGATTAAATTATCCAAGATGAGGAAAGGCATCCGGGACTTCTTCTGGGGAGTCCAGAAGGCCTGGAAACGCTTGGTCACCTGCAAGTCCTCTGGGTCCTCTGATGGGTAGCCTGGATGACGTGCAGCCCATGTCAGTTGCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190851 lncRNA upstream 86876 61520483 ~ 61525083 (+) True LOC110501762
TU190858 lncRNA upstream 92424 61519165 ~ 61519535 (+) True G167539
TU190854 lncRNA upstream 99483 61512221 ~ 61512476 (+) True G167535
TU190827 lncRNA upstream 113129 61497489 ~ 61498830 (+) True G167509
TU190802 lncRNA upstream 184477 61427177 ~ 61427482 (+) True G167494
TU190911 lncRNA downstream 23196 61639655 ~ 61699372 (+) True LOC118941131
TU190921 lncRNA downstream 57842 61674301 ~ 61729889 (+) True G167599
TU190938 lncRNA downstream 139756 61756215 ~ 61834645 (+) True G167616
TU190944 lncRNA downstream 178121 61794580 ~ 61794870 (+) True G167622
TU190978 lncRNA downstream 286528 61902987 ~ 61903742 (+) True LOC118937286
XR_005037426.1 mRNA upstream 44107 61538865 ~ 61567852 (+) True LOC118941130
XM_036952487.1 mRNA upstream 76231 61525283 ~ 61535728 (+) False LOC110510683
XM_036934053.1 mRNA upstream 86428 61520485 ~ 61525531 (+) False LOC110501762
XM_021567598.2 mRNA upstream 102643 61499096 ~ 61509316 (+) False LOC110493335
XM_021567607.2 mRNA upstream 102643 61499096 ~ 61509316 (+) True LOC110493335
XM_036934063.1 mRNA downstream 62490 61678949 ~ 61685871 (+) True LOC118936777
XM_036952503.1 mRNA downstream 82441 61698900 ~ 61699665 (+) False LOC118941131
XR_005037428.1 mRNA downstream 91990 61708449 ~ 61710105 (+) True LOC110491115
XR_005037429.1 mRNA downstream 141782 61758241 ~ 61759129 (+) True LOC110512213
XM_021564510.2 mRNA downstream 228937 61845396 ~ 61850758 (+) True LOC110491157
TU190863 other upstream 79632 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 379414 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 537368 61062593 ~ 61074591 (+) True G167288
TU190389 other upstream 745504 60851432 ~ 60866455 (+) False LOC110493059
TU190931 other downstream 110500 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 263311 61879770 ~ 61880424 (+) True LOC118936783
TU192528 other downstream 1168899 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 2204002 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 2256789 63873248 ~ 63878233 (+) True G170150

Expression Profile