RNA id: XM_036952503.1



Basic Information


Item Value
RNA id XM_036952503.1
length 639
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC118941131
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61639655 ~ 61699665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGTGAAATGGAAGAGGGGAAGAACCTTCACTTGGCCGAACTGGCTTGGGATGTGAAACGACGCCTCAGGCTTAAGGAGCTGGAAAGAGAAGTGTGCAGGGAGCTGCGCCTGGAGCGCCGAATCCGCTGGTCGGTGATTGGACAGCCTGGTAGCCAGATGGGAGATTGGAGACCCCTGggcatggagacacacacacctctgggaATGGACTCTCCCTTCAGACACTCCACCTCCTCGATGGACACTCTTTCCAGTCAGATCTCGACTGAGAACTTCGAGGTTGCTAGGCTACATACTGCCAGACCACATATTGCCAGACCACAAACTACCAGACCACGTTCTGCCAGACCACCAACTGAAAGACCTAGCAGTGACTCTGATCCCTCTGGAACCTTGTCTTCTGTGATGACCTGCTCACCACATTCAGCTAGCCCGTCAGTGGTAGGTCATTTTGGTCATGAACATGTTCCCAGCTTTCACTCTTTGGGGGCTGTAGACATATTACTGCTTCCCTGTCTCCCATCTACTGGGAAATCCATATCCAAGTACAGTGGCAAGACAAAGTATGtcaaccctttggaattacctggacttctgagtaaattggtcataaaatgttatctgatcttcatctaagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU190851 lncRNA upstream 173817 61520483 ~ 61525083 (+) True LOC110501762
TU190858 lncRNA upstream 179365 61519165 ~ 61519535 (+) True G167539
TU190854 lncRNA upstream 186424 61512221 ~ 61512476 (+) True G167535
TU190827 lncRNA upstream 200070 61497489 ~ 61498830 (+) True G167509
TU190802 lncRNA upstream 271418 61427177 ~ 61427482 (+) True G167494
TU190938 lncRNA downstream 56550 61756215 ~ 61834645 (+) True G167616
TU190944 lncRNA downstream 94915 61794580 ~ 61794870 (+) True G167622
TU190978 lncRNA downstream 203322 61902987 ~ 61903742 (+) True LOC118937286
TU191648 lncRNA downstream 237383 61937048 ~ 61937284 (+) True G168279
TU191649 lncRNA downstream 237821 61937486 ~ 61937775 (+) True G168280
XM_036934063.1 mRNA upstream 13029 61678949 ~ 61685871 (+) True LOC118936777
XM_036952493.1 mRNA upstream 82441 61611959 ~ 61616459 (+) True LOC110517167
XR_005037426.1 mRNA upstream 131048 61538865 ~ 61567852 (+) True LOC118941130
XM_036952487.1 mRNA upstream 163172 61525283 ~ 61535728 (+) False LOC110510683
XM_036934053.1 mRNA upstream 173369 61520485 ~ 61525531 (+) False LOC110501762
XR_005037428.1 mRNA downstream 8784 61708449 ~ 61710105 (+) True LOC110491115
XR_005037429.1 mRNA downstream 58576 61758241 ~ 61759129 (+) True LOC110512213
XM_021564510.2 mRNA downstream 145731 61845396 ~ 61850758 (+) True LOC110491157
XM_036952517.1 mRNA downstream 162581 61862246 ~ 61870358 (+) True LOC118941134
XM_036934069.1 mRNA downstream 170728 61870393 ~ 61880657 (+) False LOC118936783
TU190863 other upstream 166573 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 466355 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 624309 61062593 ~ 61074591 (+) True G167288
TU190389 other upstream 832445 60851432 ~ 60866455 (+) False LOC110493059
TU190931 other downstream 27294 61726959 ~ 61727454 (+) True G167609
TU190972 other downstream 180105 61879770 ~ 61880424 (+) True LOC118936783
TU192528 other downstream 1085693 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 2120796 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 2173583 63873248 ~ 63878233 (+) True G170150

Expression Profile