RNA id: XM_036934069.1


Basic Information

Item Value
RNA id XM_036934069.1
length 5570
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC118936783
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61870393 ~ 61880657 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggttaaatacaggcaAAATCAATCAATATTGGGGTTTCGGGTAGAGGTAGATTTGGGATtgggtgtttgtacacatgaacTTCCTCTAAAAATGGCTCTTTTGTGGCTCCTCCCTTTCAGGTGCTGTGTACGTGTAAAGAGTACAATCGCTACAGTAGCTACATCAAGTCAGTTCAGTTGCTGTGGGAGAAGCAGTGCTGTGCCCAGCAGaaaatGCTTTTGAAGCAGTTCCTAGTCTTGCAGCAGCAAGGGGAGGTTCCGTCCCACATCTCACTGACGGATATTAGAGATTGGCTCATTGCCAAGGGTAGAAACTACTTCAAGAACACGTTTCAGAGTGAAATGGAAGAGGGGAAGAACCTTCACTTGGCCGAACTGGCTTGGGATGTGAAACGACGCCTCAGGCTTAAGGAGCTGGAAAGAGAAGTGTGCAGGGAGCTGCGCCTGGAGCGCCGAATCCGCTGGTCGGTGATTGGACAGCCTGGTAGCCAGATGGGAGATTGGAGACCCCTGggcatggagacacacacacctctgggaATGGACTCTCCCTTCAGACACTCCACCTCCTCGATGGACACTCTTTCCAGTCAGATCTCGACTGAGAACCTCGAGGTTGCTAGGCTACATACTGCCAGACCACATATTGCCAGACCACAAACTACCAGACCACGTTCTGCCAGACCACCATCTGAAAGACCTAGCAGTGACTCTGATCACTCTGGAACCTTGTCTTCTGTGATGACCTGCTCACCACATTCAGCTAGCCCGTCAGTGATTACTGTTAGGGACTTGCTGCTCCTGATTGGGCACATAACGAGCTCAGTATTGGAGGAGGTAAATAGCATCCTGATCCCTGCCTTGGTTGACCTTATAAGGCTGAGAGCTTCAGAAAGTACTGCAGAGAATATGCCCCCCATCAGCAAAGACACCAACGAAGATTCAACCCAGGGCTCTGTCAGCTGTACCTCCCTACTCTCCAAAGTCAATGTCATCTGTCTCCCTCAGAGTCCTGACAGTAGGTCCTCCCCAATCTCCATTGATGAACCAGTCACTGCTGTCCAGACTTATTGTAGCAGCAGTTCTCTGTCCAGTGAGGAACGAGCACACTCTTTCTCCAGTCAGATCTCTACTAAGAACCTCCTGGCTGCTAGGTCACGTTCTGCCAATCCACCATCTGCTAAACTACCATCTGCTAAACCACAATCTGCTAAACCACCACCTGCTAAACCACCACTTGCTAAACCACAATCTGCTAAACCACCACCTGCTAAACCACAATCTGCTAAACCAACGCCTGCTAAACCAACACCTGCTAAACCACCACCTGCTAAACCACATTATGCTAAACCACCTACTGCCACTGACTACTCTGGAACCTTATCTGCTGTGGTAGGTCGTGGGCATATCATCCCTGTCAAACTGACCTTGGCCCCTTTCTCCTCAATCTCCAGCGACGAGACCAAcaccaacctctcctccagcagccTCCCTTCCTCGTGCTCCATCAAGCTTTCAGACAGTAGGAGTGACATTCATTGCTCCCTGACTGTAAGCTCCATTTCAAATGCTCCTGGACCTGACTCTAGCAGCAGCCCTGTGCGGGAGAATCAATTTGCTACTGAGGTCTCGTCGATCTGCCTCAGCCAAGATAGAAATGGCCAAGGAGGGAGTGTGACACCTCCAGCCCCTTTGGTTGTTTCCCTCCCCTCCATTATTGAGCGGGCTGGCAGACTTGTATGTTCCGTCATCTCCCAGTCTTTAGCAATTGTGGAGGGGCGGTCAAGTGTGAATGGTGAGGAGGGCTCTCCATCTCCCACCACAGTCTCCCATTCTCCTACAAGGGTGTTTGTCAGCCACTTAAGGAGTAGCCCACTAGGTGAGGACCTTGTAGATTCAACACTTGCGGATGTTATCTCTGTCCTGAAAATGGAGGGAATTCTTTCCTCCTCTCCGACTTTGGAGGAGGAGCTGCTTGATCTCTCCTCCAGTTGTTCTTCGTCATCCAGCGAAATACTGCAATGTGTGTCTGTTGGCCCTCTTGGCAGTGGGTCGGAGACATCCTTCAAACTTCTTGGGGGTCGTACTCTGGGTATCGCCACCCCAACGGCCCATGTTACCACAGAGGACTTAGAAGTCTACAGTGATGAGATCATTGACGAAATCCTTATTATAATGAGGACCAAAAAAGATGATGACAGTGGAAGTGACGTCTCTGGTGCATCAACACCATGCAACACACCAGCACCACAGAGCCGGTCCTCTTCTGCACTGAGGGGAGTGCTTCCCCATGACAGGAGGATACGCAGCACAACACTGCTTGGAATCCAGAACACACTAGACAGTGAGAACCTCTCAGGAGAGTGTTCCACCTCACCACAGGACAATGCCAGAGTCCTGGAGATGATAAAGTTGCTGCAGAGGCGCCTTGAGGGGACACCCTCAGAGTCCTCCATCCATATCACAGATGTGGCTTCACCCTTGGGCatatctctccctgtatctcacTATGCTGTTCAGTCGTGTGTATTTGCCACTGACAAAGACCTGAAGGCAGAAAGAGTGAAGGGAGTCTTTGAAAGCCTGAGATCCCAGTTTATGAGCTACTCCATCAAGCCTGTGAGTAACATCATTACCAGGGCAACAACAAAGATGGCTGCCTCCAATCAGGTTAGTTCAGAGACACTCCAGGCAGCATCAGCAAAATCATCTGCTGTGGCTCAGAACCTTATTAGTTCGGTTTTATTTAAAGTTGCCAAGATGTCCTGCTCTGATGACTTAGAGGGTCTGGGTGATCATATCAGATGCCCCTCAACTTTGACCAGAGTTCTGACACCTTTGACCTTGGAGAAAGCTACACTGACACCTGCTGTTCTGAAGATCAGAAGGGAGATGTCTAAGGAAGTGGCCACCGAACTCCAGAGTTTCTTGATCAAGGAATCCCTTACTGGCACCCAGGCACCATCCAATGGACATGTTTGCACTTCTGGTTCTGCCCCAAGGGAAGCTGTATGGGACATCCTGAGGAAAACCAAAGAGGAGGCTTCCAACAAAAGCCTGAATAATATTTTCTCTGTTAATTTGGATGAGCGGCTCACAGACTATATTGCAGATGCCTTATATCCAAAGCTGCATGACCAATTGGAGTCCAAGAGAGAGCTGCAGGCTTCTTATTACAGCTCCCAGATCAGCTGTAGCCTCAGCCCCTTCAAAGTTGAGAGCAGCCTAGAGCTCCAGGAGTTCACTGACCCACTTTCTGAGTCAGTATTGTGTCTCCTGGATAGGACATTTGGAGATAAAGCTCAGAACTTAAAGACAGGCGGGGGTGTTTTACAATATGTCACAGACCCAACCTATAAGAAGCTTTTGATTGGATCCCACACCAACGACGTCAATGTGGTTATGCACACGATTGCAGTGGAGGAGTTGCCTGTTGAGGGCTGTATTGCACAAAGTGAGGCCATTCATGGCCTTCACAAGAAGCAAAAGTTACCTTCCAGTGGCAGAGGGAATGAGACCCCGAGCCCTACTAATTGCCTACTGGAGGGTGTAGTGGGCAAACTGGTACGGAAGATGCTATTTCAGGGCCTTGACATCCCTGAGGTACCCATAAACTACAGCCGCTCTGAGAACTTTAAGCTACAGTATGAACTGGTTGCAAAGCTTTGTCCTCTGATGGTAAGGACAATCATGGCTACAACCATAGTCAATCAACCACCTACTATTCAAGAAGCAGTGATGTCTTCCGAGAACATCCATGTGAGAGAGCTGTGTGAGGCAGGTATCAAAAACCTCAAAGAGAACCATGTACCTGATGACTCTGAGACAAACATCATGGTCAGAGGGGCTTTGAGTGAAATTGAATCCTGTATGATTGAGACCTCCGACAAGGACTCTCCCAGTCTACATTCCACACCAGAGGTGGTTGTAGACCTGATCACCAAGCTGCTTCATGGGTATGAGCTTGACGCAGAAGACTTTGCATCACCTGTGTCATCCCCAACCACCACTCTCTCTGATGTGGCAATGGACATGGTGGTTTCTGTCCTTCGGGACATGTCCGATTCCCCAGACGTTACCTCAGCATTGGAAATGACCAAGGATCTCAAGACGCCGTACTCCCGCCCCTCAAGTGCAAGGATTGTAAGTGCCCTCTGCAGAGAGCTGGAGGAGCAAATGGGCTCTCCTGATGCTCTGAGGCGAGCTTTGAGCCGTGGCAGCGGGGAGATGACAACAGCCATTGCGAGTGCAGTCACCAGGGAAGTCAACCGTCTGGGTTCAATCGTACCCAAAGTCTCTATCAGGCCGCTCTCCTCAGACATCTGCCtaaggacagaccaggacaaggtCATCGTTAAGAGCCGATGTGGCTCGGCTGAGGTGAAGGCATCCCAACCGGTGTATATTATTGTTCATGTAGAGGCGGTGATGGATATCATTGTCCGGCTGCGGTCTCTGATTGTTCCTCGGACCCAGGATAAACTGGCCAGCTGGACCCTAGTTGAGGATGTGACCAACAAGCTGTCCAGTGCTCTGTGGGTGAGGGTGACTAACAGGTGGAGGGAAGCAAATGTCTGCCTGAAGGCAACAGACATCTTTCAGTTGGTGCTGTCTGTGCATAGCAAGTTGATGCAACGCTATGGCACAGAGGAAGCCCTACAGAAGATACTGTGCCACAAGGCACCCAAGCTGCACAAGGACATTGTCTGTCTTGTCACAAACGGAATTATGGATGCACCATCCAAAATTCAAAGCACCAAAAATCTGGAATCTACACTCAACTTGAAAGAATTGACAGCCTTGTTTAATGAAATGACAACCCGTCAATCTTTGAATAAGAAAGCTGAGCAGAGCAGCATCAAGATTGAGATTGAACAGCCGGAGTGGTCCACTGTGGAACAAGTGACATCCGGTTCCACCAGCTTCATTAGGGAGCTTATATTAGAAGAAGTCCTGATGAAGCTTGTCAAGAAGATATGCCGTATGCCAAAAAGGACCAACAAGCGTCAGCGCATCCAGATCAGTGATCTGGTGACTGAGCTGATCCGATTGTTCGACGATGAGGTGGCCAAATATCTGATTGAGGAAATGGAAAGCCAGCAAAAAAGTTTCAATTCTAAGATGACATCGAAGCTGGCAGATGCCATCTACACTGACCTTGGGAAGGTCAAGCGTTTGAAACGCTCCTTGAAAATTGCCGATTTATTTGAGGATCAGGAGATGCtttccattgtctctgtcattGTTTCCCACAAGCTACTGGCCATCTTGAAACCCTCAGTTTCCAACCCATATGACCGTGAGACCTCAGACCTTGAAGACTCATGCAGTGATGATGTGGAGGATTTGGAATCTGAGGGGGTGCATTATACCACCGGCAGAAAGTCCAACATGAGCATCGTCCTTACAGACACTACAAACCAGCCAGAGATGTACATTGCTGTGGATTCTCCACCTATGATTAAATTATCCAAGATGAGGAAAGGCATCTGGGACTTCTTCTGGGGAGTCCAGAAGGCCTGGAAACGCTTGGTCACCTGCAAGTCCTCTGGGTCCTCTGATGGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190938 lncRNA upstream 35748 61756215 ~ 61834645 (+) True G167616
TU190944 lncRNA upstream 75523 61794580 ~ 61794870 (+) True G167622
TU190921 lncRNA upstream 140504 61674301 ~ 61729889 (+) True G167599
TU190911 lncRNA upstream 171021 61639655 ~ 61699372 (+) True LOC118941131
TU190851 lncRNA upstream 345310 61520483 ~ 61525083 (+) True LOC110501762
TU190978 lncRNA downstream 22330 61902987 ~ 61903742 (+) True LOC118937286
TU191648 lncRNA downstream 56391 61937048 ~ 61937284 (+) True G168279
TU191649 lncRNA downstream 56829 61937486 ~ 61937775 (+) True G168280
TU191660 lncRNA downstream 64452 61945109 ~ 61945418 (+) True G168291
TU191662 lncRNA downstream 65547 61946204 ~ 61946444 (+) True G168293
XM_036952517.1 mRNA upstream 35 61862246 ~ 61870358 (+) True LOC118941134
XM_021564510.2 mRNA upstream 19635 61845396 ~ 61850758 (+) True LOC110491157
XR_005037429.1 mRNA upstream 111264 61758241 ~ 61759129 (+) True LOC110512213
XR_005037428.1 mRNA upstream 160288 61708449 ~ 61710105 (+) True LOC110491115
XM_036952503.1 mRNA upstream 170728 61698900 ~ 61699665 (+) False LOC118941131
XM_036934623.1 mRNA downstream 22674 61903331 ~ 61905185 (+) False LOC118937286
XM_036952522.1 mRNA downstream 30286 61910943 ~ 61916119 (+) True LOC110491137
XM_021567628.2 mRNA downstream 177272 62057929 ~ 62062744 (+) True avpr1aa
XM_036952547.1 mRNA downstream 211762 62092419 ~ 62154496 (+) True ppm1h
XM_036952617.1 mRNA downstream 402547 62283204 ~ 62345950 (+) False fbln1
TU190931 other upstream 142939 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 338066 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 637848 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 795802 61062593 ~ 61074591 (+) True G167288
TU190393 other upstream 1003938 60851432 ~ 60866455 (+) True LOC110493059
TU192528 other downstream 904701 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 1939804 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 1992591 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 3650489 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 3712860 65593517 ~ 65640976 (+) False jph3

Expression Profile