RNA id: XM_036934623.1


Basic Information

Item Value
RNA id XM_036934623.1
length 1358
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC118937286
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61902987 ~ 61905185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATtgggtgtttgtacacatgaacTTCCTCTAAAAATGGCTCTTTTGTGGCTCCTCCCTTTCAGGTGCTGTGTACGTGTAAAGAGTACAATCGCTACAGTAGCTACATCAAGTCAGTTCAGTTGCTGTGGGAGAAGCAGTGCTGTGCCCAGCAGaaaATGCTTTTGAAGCAGTTCCTAGTCTTGCAGCAGCAAGGGGAGGTTCCGTCCCACATCTCACTGACGGATATTAGAGATTGGCTCATTGCCAAGGGTAGAAACTACTTCAAGAACACGTTTCAGAGTGAAATGGAAGAGGGGAAGAACCTTCACTTGGCCGAACTGGCTTGGGATGTGAAACGACGCCTCAGGCTTAAGGAGCTGGAAAGAGAAGTGTGCAGGGAGCTGCGCCTGGAGCGCCGAATCCGCTGGTCGGTGATTGGACAGCCTGGTAGCCAGATGGGAGATTGGAGACCCCTGggcatggagacacacacacctctgggaATGGACTCTCCCTTCAGACACTCCACCTCCTCGATGGACACTCTTTCCAGTCAGATCTCGACTGAGAACCTCGAGGTTGCTAGGCTACATACTGCCAGACCACATATTGCCAGACCACAAACTACCAGACCACGTTCTGCCAGACCACCATCTGAAAGACCTAGCAGTGACTCTGATCACTCTGGAACCTTGTCTTCTGTGATGACCTGCTCACCACATTCAGCTAGCCCGTCAGTGGTAGGTCATTTTGGTCATGAACATGTTCCCAGATTTCACTCTTTGGGGGCTGTAGGCATATTACTGCTTCCCTGTCTCCCATCTACTGGGAAATCCATATCcaagtacagtggcaagaaaaagtatgtgaaccctttggaattacctggacttctgcgtaaattggtcataaaatgttatctgatcttcatctaagtcacaacaatagacaaacaatgatactttttcatgtctttattgaacacacggtgtaaacattcacagtgcagggtggaaaaagtacactcagcaaaaaaagaaacttccctttttcaggatcctTTCTTTGAAAGATAATTCATAtatatccaaataacttcacagatcttcattttaaagggtataaacactgtttcccatgcttgttcaatgaaccatgaacaattaatgaacatgcatttGTGGAACGATcgttaaaacactaacagcttacagacgataggcaattaaggtcacagttatgaaaacttaggaaacTAAAGAGGCCTTTATACTAACCTTTCTATTAAcctcaaaagaaagatgcccagggttcctgctcatctgcgtgaacgtgccttcggcatgctgcaaggacgcatgaggactgcagatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190938 lncRNA upstream 68686 61756215 ~ 61834645 (+) True G167616
TU190944 lncRNA upstream 108461 61794580 ~ 61794870 (+) True G167622
TU190921 lncRNA upstream 173442 61674301 ~ 61729889 (+) True G167599
TU190911 lncRNA upstream 203959 61639655 ~ 61699372 (+) True LOC118941131
TU190851 lncRNA upstream 378248 61520483 ~ 61525083 (+) True LOC110501762
TU191648 lncRNA downstream 31863 61937048 ~ 61937284 (+) True G168279
TU191649 lncRNA downstream 32301 61937486 ~ 61937775 (+) True G168280
TU191660 lncRNA downstream 39924 61945109 ~ 61945418 (+) True G168291
TU191662 lncRNA downstream 41019 61946204 ~ 61946444 (+) True G168293
TU191705 lncRNA downstream 86326 61991511 ~ 62038823 (+) True G168335
XM_036934069.1 mRNA upstream 22674 61870393 ~ 61880657 (+) False LOC118936783
XM_036952517.1 mRNA upstream 32973 61862246 ~ 61870358 (+) True LOC118941134
XM_021564510.2 mRNA upstream 52573 61845396 ~ 61850758 (+) True LOC110491157
XR_005037429.1 mRNA upstream 144202 61758241 ~ 61759129 (+) True LOC110512213
XR_005037428.1 mRNA upstream 193226 61708449 ~ 61710105 (+) True LOC110491115
XM_036952522.1 mRNA downstream 5758 61910943 ~ 61916119 (+) True LOC110491137
XM_021567628.2 mRNA downstream 152744 62057929 ~ 62062744 (+) True avpr1aa
XM_036952547.1 mRNA downstream 187234 62092419 ~ 62154496 (+) True ppm1h
XM_036952617.1 mRNA downstream 378019 62283204 ~ 62345950 (+) False fbln1
XM_036952598.1 mRNA downstream 378027 62283212 ~ 62369308 (+) False fbln1
TU190972 other upstream 22907 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 175877 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 371004 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 670786 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 828740 61062593 ~ 61074591 (+) True G167288
TU192528 other downstream 880173 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 1915276 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 1968063 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 3625961 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 3688332 65593517 ~ 65640976 (+) False jph3

Expression Profile