RNA id: XM_036952522.1


Basic Information

Item Value
RNA id XM_036952522.1
length 4913
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110491137
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 61910943 ~ 61916119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCACCACTTGCTAAACCACAATCTGCTAAACCACCACCTGCTAAACCACAATCTGCTAAACCAACGCCTGCTAAACCAACACCTGCTAAACCACCACCTGCTAAACCACCTACTGCCACTGACTACTCTGGAACCTTATCTGCTGTGGTAGGTCGTGGGCATATCATCCCTGTCAAACTGACCTTGGCCCCTTTCTCCTCAATCTCCAGCGACGAGACCAAcaccaacctctcctccagcagccTCCCTTCCTCGTGCTCCATCAAGCTTTCAGACAGTAGGAGTGACATTCCTTGCTCCCTGACTGTAAGCTCCATTTCAAATGTTCCTGGACCTGACTCTAGCAGCAGCCCTGTGCGGGAGAATCAATTTGCTACTGAGGTCTCGTCGATCTGCCTCAGCCAAGATAGAAATGGCCAAGGAGGGAGTGTGACACCTCCAGCCCCTTTGGTTGTTTCCCTCCCCTCCATTATTGAGCGGGCTGGCGGACTTGTATGTTCCGTCATCTCCCAGTCTTTAGCAATTGTGGAGGCGCGGTCAAGTGTGAATGGTGAGGAGGGCTCTCCATCTCCCACCACAGTCTCCCATTCTCCTACAAGGATGTTTGTCAGCCACTTAAGGAGTAGCCCACTAGGTGAGGACCTTGTAGATTCAACACTTGCGGATGTTATCTCTGTCCTGAAAATGGAGGGAATTCTTTCCTCCTCTCCGACTTTGGAGGAGGAGCTGCTTGATCTCTCCTCCAGTTGTTCTTCGTCATCCAGCGAAATACTGCAATGTGTGTCTGTTGGCCCTCTTGGCAGTGGGTCGGAGACATCCTTCAAACTTCTTGGGGGTCGTACTCTGGGTATCGCCACCCCAACGGCCCATGTTACCACAGAGGACTTAGAAGTCTACAGTGATGAGATCATTGACGAAATCCTTATTATAATGAGGACCAAAAAAGATGATGACAGTGGAAGTGACGTCTCTGGTGCATCAACACCATGCAACACACCAGCACCACAGAGCCGGTCCTCTTCTGCACTGAGGGGAGTGCTTCCCCATGACAGGAGGATACTCAGCACAGCACTGCTTGGAATCCAGAACACACTAGACAGTGAGAACCTCTCAGGAGAGTGTTCCACCTCACCACAGGACAATGCCAGAGTCCTGGAGATGATAAAGCTGCTGCAGAGGCGCCTTGAGGGGACACCCTCAGAGTCCTCCATCCATATCACAGATGTGGCTTCACCTTTGGGCatatctctccctgtatctcacTATGCTGTTCAGTCGTGTGTATTTGCCACTGACAAAGACCTGAAGGCAGAAATAGTGAAGGGAGTCTTTGAAAGCCTGAGATCCCAGTTTATGAGCTACTCCATCAAGCCTGTGAGTAACATCATTACCAGGGCAACAACAAAGATGGCTGCCTCCAATCAGGTTAGTTCAGAGACACTCCAGGCAGCATCAGAAAAATCATCTGCTGTGGCTCAGAACCTTATTAGTTTGGTTTTATTTAAAGTTGCCAAGATGTCCTGCTCTGATGACTTAGAGGGTCTGGGTGATCATATCAGATGCCCCTCAACTTTGACCAGAGTTCTGACACCTTTGACCTCGGAGAAAGCTACACTGACACCTGCTGTTCTGAAGATCAGAAGGGAGATGTCTAAGGAAGTGGCCACCGAACTCCAGAGTTTCTTGATCAAGGAATCCCTTACTGGCACCCAGGCACCATCCAATGGACATGTTTGCACTTCTGGTTCTGCCCCAAGGGAAGCTGTATGGGACATCCTGAGGAAAACCAAAGAGGAGGCTTCCAACAAAAGCCTGAATAATATTTTCTCTGTTAATTTGGATGAGCGGCTCACAGACTATATTGCAGATGCCTTATATCCAAAGCTGCATGACCGATTGGAGTCCAAGAGAGAGCTGCAGGCTTCTTATTACAGCTCCCAGATCAGCTGTAGCCTCAGCCCCTTCAAAGTTGAGAGCAGCCTAGAGCTCCAGGAGTTCACTGACCCACTTTCTGAGTCAGTATTGTGTCTCCTGGATAGGACATTTGGAGATAAAGCTCAGAACTTAAAGACAGGCGGGGGTGTTTTACAATATGTCACAGACCCAACCTATAAGAAGCTTTTGATTGGATCCCACACCAACGACGTCAATGTGGTTATGCACACGATTGCAGTGGAGGAGTTGCCTGTTGAGGGCTGTATTGCGCAAAGTGAGGCCATTCATGGCCTTCACAAGAAGCAAAAGTTACCTTCCAGTGGCAGAGGGAATGAGACCCCGAGCCCTACTAATTGCCTACTGGAGGGTGTAGTGGGCAAACTGGTACGGAAGATGCTATTTCAGGGCCTTGACATCCCTGAGGTACCCATAAACTACAGCCGCTCTGAGAACTTTAAGCAGTATGAACTGGTTGAAAAGCTTTGTCCTCTGATGGTAAGGACAATCATGGCTACAACCATAGTCAATCAACCACCTACTATTCAAGAAGCAGTGATGTCTTCCGAGAACATCCATGTGAGAGAGCTGTGTGAGGCAGGTATCAAAAACCTCAAAGAGAACCATGTACCTGATGACTCTGAGACAAACATCATGGTCAGAGGGGCTTTGAGTGAAATTGAATCCTGTATGATTGAGACCTCCGACAAGGACTCTCCCAGTTTACATTCCACACCAGAGGTGGTTGTAGACCTGATCACCAAGCTGCTTCATGGGTATGAGCTTGACGCAGAAGACTTTGCATCACCTGTGTCATCCCCAACCACCACTCTCTCTGATGTGGCAATGGACATGGTGGTTTCTGTCCTTCGGGACATGTCCGATTACCCAGACGTTACCTCAGCATTGGAAATGACTAAGGATCTCAAGACGCCGTACTCCCGCCCCTCAAGTGCAAGGATTGTAAGTGCCCTCTGCAGAGAGCTGGAGGAGCAAATGGGCTCTCCTGATGCTCTGAGGCGAGCTTTGAGCCGTGGCAGCGGGGAGATGACAACAGCCATTGCGAGTGCAGTCACCAGGGAAGTCAACCGTCTGGGTTCAATCGTACCCAAAGTCTCTATCAGGCCGCTCTCCTCAGACATCTGCCtaaggacagaccaggacaaggtCATCGTTAAGAGCCGATGTGGCTCGGCTGAGGTGAAGGCATCCCAACCGGTGTATATTATTGTTCATGTAGAGGCGGTGATGGATATCATTGTCCGGCTGCGGTCTCTGATTGTTCCTCGGACCCAGGATAAACTGGCCAGCTGGACCCTAGTTGAGGATGTGACCAACAAGCTGTCCAGTGCTCTCTGGGTGAGGGTGACTAACAGGTGGAGGGAAGCAAATGTCTGCCTGAAGGCAACAGACATCTTTCAGTTGGTGCTGTCTGTGCATAGCAAGTTGATGCAACGCTATGGCACAGAGGAAGCCCTACAGAAGATACTGTGCCACAAGGCACCCAAGCTGCACAAGGACATTGTCTGTCTTGTCACGAATGGAATTATGGATGCACCATCCAAAATTCAAAGCACCAAAAATCTGGAATCTACACTCAACTTGAAAGAATTGACAGCCTTGTTTAATGAAATGACAACCCGTCAATCTTTGAATAAGAAAGCTGAGCAGAGCTGCATGAAGACTGAGATTGAACAGCCGGAGTGGTCCACTGTGGAACAAGTGACATCCGGTTCCACCAGCTTCATTAGGGAGCTTATATTAGAAGAAGTCCTGATGAAGCTTGTCAAGAAGATATGCCGTATGCCAAAAAGGACCAAGAAGCGTCAGCGCATCCAGATCAGTGATCTGGTGACTGAGCTGATGCGATTGTTCGACGATGAGGTGGCCAAATATCTGATTGAGGAAATGGAAAGCCAGCAAAAAAGTTTCAATTCTAAGATGACATCGAAGCTGGCAGATGCCATCTACACTGACCTTGGGAAGGTCAAGCGTTTGAAACGCTCCTTGAAAATTGCCGATTTATTTGAGGATCAGGAGATGCtttccattgtctctgtcattGTTTCCCACAAGCTACTGGCCATCTTGAAACCCTCAGTTTCCAACCCATATGACCGTGAGACCTCAGACCTTGAAGACTCATGCAGTGATGATGTGGAGGATTTGGAATCTGAGGGGGTGCATTATGCCACCAACAGAAAGTCCAACATGAGCATCGTCCTTACAGACACTACAAACCAGCCAGAGATGTACATTGCTGTGGATTATCCACCTATGATTAAATTATCCAAGATGAGGAAAGGCATCCGGGACTTCTTCTGGGGAGTCCAGAAGGCCTGGAAACGCTTGGTCACCTGCAAGTCCTCTGGGTCCTCTGATGGGTAGCCTGGATGACGTGCAGCCCATGTCAGTTGCTTTTGCTAGGCTACATCTGAGGAGGGCACCACAACTGGCCTCAatacaacatttttatttttgttgctcATTTCTGTTTTCATTTTGAATCCCCTAATGCTGCTATATTTGAACCAGGCTGTCAGTGGACTAGCTTACCATTCGTTTATACTCCTTAAGGAAGATCCACTATAGGCTACTCAACACCAAAATTCCATCTGGGACTTTTGATCCCTTATTAGCTCCCACTCCTGTAACTAGGAATGTGAGCTTCTAAATGTCATTCAGACTACAGCTTCTCCTGTGATTAGGAAGATAAGCTAAGAAGCCCAACCAATTGACTAGATGTGCTGTACATCTGATGCCCTCTCCCTATTGTAATCATTGATCCACGTCCATTGCAGCCTCTAAATGTGATGTCGATTTTTAGCCTAAATTAAAAAATGACAAGGAGGGTAGGCCGACAGCAGCTTCTACTCTTACGATTAGGAAAGTGGTGCTAAACTTTTTGGGCTTTGAGGAactatgtattttatttttcaatCACTTACATACTTTTTAATTGTTGTTTTAATAAAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190978 lncRNA upstream 7201 61902987 ~ 61903742 (+) True LOC118937286
TU190938 lncRNA upstream 76298 61756215 ~ 61834645 (+) True G167616
TU190944 lncRNA upstream 116073 61794580 ~ 61794870 (+) True G167622
TU190921 lncRNA upstream 181054 61674301 ~ 61729889 (+) True G167599
TU190911 lncRNA upstream 211571 61639655 ~ 61699372 (+) True LOC118941131
TU191648 lncRNA downstream 20929 61937048 ~ 61937284 (+) True G168279
TU191649 lncRNA downstream 21367 61937486 ~ 61937775 (+) True G168280
TU191660 lncRNA downstream 28990 61945109 ~ 61945418 (+) True G168291
TU191662 lncRNA downstream 30085 61946204 ~ 61946444 (+) True G168293
TU191705 lncRNA downstream 75392 61991511 ~ 62038823 (+) True G168335
XM_036934623.1 mRNA upstream 5758 61903331 ~ 61905185 (+) False LOC118937286
XM_036934069.1 mRNA upstream 30286 61870393 ~ 61880657 (+) False LOC118936783
XM_036952517.1 mRNA upstream 40585 61862246 ~ 61870358 (+) True LOC118941134
XM_021564510.2 mRNA upstream 60185 61845396 ~ 61850758 (+) True LOC110491157
XR_005037429.1 mRNA upstream 151814 61758241 ~ 61759129 (+) True LOC110512213
XM_021567628.2 mRNA downstream 141810 62057929 ~ 62062744 (+) True avpr1aa
XM_036952547.1 mRNA downstream 176300 62092419 ~ 62154496 (+) True ppm1h
XM_036952617.1 mRNA downstream 367085 62283204 ~ 62345950 (+) False fbln1
XM_036952598.1 mRNA downstream 367093 62283212 ~ 62369308 (+) False fbln1
XM_036952590.1 mRNA downstream 367095 62283214 ~ 62369308 (+) False fbln1
TU190972 other upstream 30519 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 183489 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 378616 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 678398 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 836352 61062593 ~ 61074591 (+) True G167288
TU192528 other downstream 869239 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 1904342 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 1957129 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 3615027 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 3677398 65593517 ~ 65640976 (+) False jph3

Expression Profile