RNA id: XM_021567628.2


Basic Information

Item Value
RNA id XM_021567628.2
length 4149
RNA type mRNA
GC content 0.42
exon number 2
gene id avpr1aa
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62057929 ~ 62062744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGTCAGCTTCAGGTAGCTCCTTATAAAGAGAGAGACTCAACTCTGCCCCTCTAGCACTGTAACTAGGGCCAAGGATCACACAGGGGGGCTGTGCTATGCACACTCCCGTACATGCACTCCTCTCTTAAAGTAGTCAACCAGTCTCTGGTTTTCAGTCCTACGAATGATCCGATGATGGGGATCCTTGGCAATGGCACCGTGCTCCCGAACGGGAGCGATCCTTTCGGTAGAAACGAAGAGGTCGCAAAAATAGAGATAACGGTCCTGAGCATCACCTTTGTGGTGGCCGTGATTGGGAACGTCAGTGTCTTGCTGGCCATGTACAACACTAAGAAAAAGACGTCGAGAATGCACCTCTTCATCCGGCACCTTAGTATTGCTGACCTAGTGGTCGCCTTCTTTCAGGTCCTGCCGCAGATATGCTGGGAGATCACCTTTCGCTTCTACGGACCAGATTTCCTGTGCAGGATAGTGAAGCACCTCCAGGTGATGGGCATGTTCGCCTCCACCtacatgatggtgatgatgacccTGGACCGTTACATCGCCATCTGCCACCCTCTGAAAACCCTCCAGCAGCCCACCCAGCGGTCTTACATCATGATCATTAGCACCTGGATGAGTAGTCTGGTCCTCAGCATGCCGCAGTACTTTATATTCTCCCTGAGTGAGATCAAGAACGGCTCGGAGGTCTACGACTGCTGGGGCCACTTCATAGAACCGTGGGGCGTAAAAGCATACATTACTTGGATAACCGTTGGCATCTTCCTCATCCCCGTGTTCATTCTGATGATATTCTACGGGTTCATCTGCCACAGCATATGGAAAAATATCAAGTATAAGACAAAGAAGACACCCGTGGGAGGTGCGTCTAAAAACGGTCTAATGGGCAAGAACGCCGTTAGCAGCGTCACCACTATATCCAGAGCGAAGTTGAGAACGGTCAAAATGACTTTTGTGATTGTTCTGGCGTACATTATTTGCTGGTCACCTTTCTTCATCGTACAGATGTGGTCGGTTTGGGATGAGAACTTCGCATGGGATGATTCTGAGAACACGGCTGTCTCACTGTCCGCGCTCCTCGCGAGTCTTAACAGCTGCTGTAACCCGTGGATATACATGATCTTCAGCGGGCATCTCCTACACGACTTCACTCACTGTTTCCCGTGCTGTAATAACTTACGCCACAAGTTCAAGAAAGAGGACTCTGACAGCAGTCTCCGGAGAAATACGCTATTGAGTAAAATGACCAACCGGAGCCCAACATGCAGTTCGGGCACATGGAAAGACCCTGACAACTCGACCAAGTCTTCCGTTCCATCTATCCAAACGGAGACCTAACCCAGCGCGTTAAAAGCACAAACACACGACAGAGATGAATTATATTGAACTCTTATTGACTTGACAATTGTACAACTTTCAAGGTACCACTTAAAACTGTTGAGATATTGACACTGATTGATTATTTCATGTGTCTCTAAAATATATTTGTGATTATGAAGTGGTTTTGGGGTTTATTGTCTGGTATGCCAGTCTTGGCAACGTCAAAGTGAAAAACTATTTATTCTGGTATAAACCATtattatgtatgtgtgccataTACAGTCCAGTGTTTCATCAGGTTCCAAACCTGATTCTCTGGAGTCTACTATTGTTAATAATGACTGAAATAGGCTACATCAGATCTGAATTTGAAAATGTATAGTGGAAAAGAAACAGGTCATCGGAACATATTTAAATACCAACAGCCACAGCTATATCACATGAGTTCTTTTTCTTTTTCACGTCCTATAACATTCCACATTCCAGTCCTCTTTTCTATTTATTCTGAGTTGACATGATCCAGCCTAGGGATTTCTACAGCAAAACCCAGACCACTTCGGATGACAAATTACAGATCCATGACCAAGATGCATGATCTAGATGATCACAGTCATGCTATTAAAAGTAAATGCACTTTTTTTTTGATAACAGTTAGCctgctgtttgtttgtgtgtgtgactatgtgtTGGCCCTATATGCCCAGTGAGCCTATATCTCAGTGTGAAATTAAATACATTTGGCCCTGACTGTTTACAAAGTAACAGAGGTGCCTGTCTGCCGGCCTGGTTGACTTCTACACAGACCCCCCATGGTGTGTTGTGGTCAGAATGGCTCTTCCATTAGCCACGTCTTCTAGTAACCAAGAGGATCAGCTCTTTTAGGTGTCTGAACTTATTTTGTCCCGTGTCTCCCAACTACTGTTTTGCATCCTGTTTTGCATCCTTGCATCCTTGTTTTTCAAGCCTGAACCAAAGATGAATGGATTCTGGATAAAAGCTGCATGTGTGCTGAAATCAGGATCTCAATTCTACCTCACATTGGACCATTTTCCATCCTTTTCTTCAGTGACTATTTCCCAAAACAATTCCATAGAGCCTCGTAGCTCATAAATCGATGAGAAATGGTTTCTTCTGCATTTAGAACCCTTAAAAAATGACCTTAATCTAAATGTCCATTGGGACATCATCATTAGTCATCTAGTTTATACAGTTCACCAATGTCGTTAAGGCCGTCattgtaggtcgtcattgtaaataaaaatgtgttcttacctgacttgcctagttaaataaaggttaaatatatatatatatatatttatatatatatttttttaaataaccccTAGTTAAATCACTGGCCTCCGTGGCTGGAGCATCTGTGGACAATGTTGAGAGACCAGATGTGACTGTCTCCCTCAGCTTGAGAATAACTAACTGGTTGTGCCATGTACTATGTATGCATTAACCTCATCCCCATGGTATTTTCCTACAGAGAGAGAATTGTCTGGTGGATGAGATGAACTGTGTATGAATGTATGTTTAGGGGGTGAAGTGAGTGAAATAGTAGGGGCCGTTTGAGAAGAAATAGAGCCTACTGTTCTGTATAAGccatactgtgtatatatatagatgtgtgtgtgtgtgtgtcacagctcCTCCCATATCCTCCACatcaggtggcaggtagcctagtggctagagtgttcgactagtaaccgaaaggttgcaagattgaatccctgagccgacaagatAAAAAAAacgttgttctgcccctgaacaaggcaattaacccactgttcctaggctgtcattgaaaataagaattagttcttaactgacttgcctagttaaataaaggtagaaaAATAAATCTGCAACATTTGAAAAAATACACCTTCCACAACATGGGCTACTGGTTAAAAACTCACACAGACATGCTTTTGGACACAGCCCACATTGTAACACACTACACAATTTGCTGTACTTTTCATGCCAATGTATTCTATAGGATGTGACTGACATTTCATTGCCAGACCAAATAAGAATGTACTAAAAGGAAAATACTGACATAAAATATAAAATCTCAAGTAAAGGTTTTCCTGTTTGTATATACAGAATGTACTATACAACTGGAATGtatgtttctattgaacatgtgTTTTGCCAGTGCTGAAGTTATCTATATGAATAATTTATGTAAAGGTGTGTAATGTGACTTTGTATCTATTTACTCTTGCTTGTACAAATTGTAAAGACAATACATATCGCCGAAAATATAAAGTAAATATTCTATACAAAATAagtaatgtctctgtctctttttaaAATAAGTAGCAAAGGAGACACTTTTTGTATACTCAGGAGAAGGGGAACACTGATGTGTctgaaatgccaccctattccctatagtggactgcttttgaccagggcccatagggctcaaaATTAGGTCTAAAGTAGGCTAGTGTCCTATATAAGGAAAATAGTTAGTGGTTtgcgggtcagctgtttgttcacccgcacccCAACCACCcgactatatgtgataaagtgaaaatctgaggctcGCACCCGAACCGAACCCTGAAATATAGACAATGTGCTATACAGTCAGAGATGGCAGAATTATTTTTTTGACGGGGCCTTTTAGATAGGCCTATGTTTCTGCTTAATCAAcaagtctataatacagtaggcCTATGCAGCTGTGAAAACTACCCAACATCTTTCGGCTTGGAGGCATGTTTTACTCTATGTGGTTGAAACAGGCTACTGTCAGCTTTTATGTTGTAGAACCATTACAGACTGTAAGCATTAA

Function

GO: NA

KEGG:

id description
K04226 AVPR1A; arginine vasopressin receptor 1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191705 lncRNA upstream 19106 61991511 ~ 62038823 (+) True G168335
TU191662 lncRNA upstream 111485 61946204 ~ 61946444 (+) True G168293
TU191660 lncRNA upstream 112511 61945109 ~ 61945418 (+) True G168291
TU191649 lncRNA upstream 120154 61937486 ~ 61937775 (+) True G168280
TU191648 lncRNA upstream 120645 61937048 ~ 61937284 (+) True G168279
TU191782 lncRNA downstream 54431 62117175 ~ 62117597 (+) True G168409
TU191837 lncRNA downstream 131411 62194155 ~ 62195468 (+) True G168460
TU191923 lncRNA downstream 253007 62315751 ~ 62315972 (+) True G168539
TU192380 lncRNA downstream 407185 62469929 ~ 62471380 (+) True G168985
TU192381 lncRNA downstream 411396 62474140 ~ 62476409 (+) True G168986
XM_036952522.1 mRNA upstream 141810 61910943 ~ 61916119 (+) True LOC110491137
XM_036934623.1 mRNA upstream 152744 61903331 ~ 61905185 (+) False LOC118937286
XM_036934069.1 mRNA upstream 177272 61870393 ~ 61880657 (+) False LOC118936783
XM_036952517.1 mRNA upstream 187571 61862246 ~ 61870358 (+) True LOC118941134
XM_021564510.2 mRNA upstream 207171 61845396 ~ 61850758 (+) True LOC110491157
XM_036952547.1 mRNA downstream 29675 62092419 ~ 62154496 (+) True ppm1h
XM_036952617.1 mRNA downstream 220460 62283204 ~ 62345950 (+) False fbln1
XM_036952598.1 mRNA downstream 220468 62283212 ~ 62369308 (+) False fbln1
XM_036952590.1 mRNA downstream 220470 62283214 ~ 62369308 (+) False fbln1
XM_036952607.1 mRNA downstream 255506 62318250 ~ 62369304 (+) True fbln1
TU190972 other upstream 177505 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 330475 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 525602 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 825384 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 983338 61062593 ~ 61074591 (+) True G167288
TU192528 other downstream 722614 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 1757717 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 1810504 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 3468402 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 3530773 65593517 ~ 65640976 (+) False jph3

Expression Profile