RNA id: XM_036952533.1


Basic Information

Item Value
RNA id XM_036952533.1
length 6135
RNA type mRNA
GC content 0.56
exon number 35
gene id mon2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62167418 ~ 62217632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTACCAAAGCATTGTGGGATCGAAACGGAGCTTGCAATGGTGACGGCTGGAGCCGTGAAACCTACGGCTGAAACGGAGACATATTAACCATATAAGTGGCACTAGTAGCTAGAATTGTGCTAATGATGATCATCTATCACACTAACGTCTAGGCTTTTTGTTGAAGATAAACTTATGCCGTGTCATCGCTTCGATTATGCACACAGACGGATAAGACAAAGCAGAACACTGAAATATTGTATCAATGGACGCTTGTGCGGAGGTCCACagcgtttttgtttttttcgaagGAGCTGAATAAGTAGGCCGGGGACCAGTATCATAGGACTGCATTTGCATTCCTTATTATTTAAAGCTTTTGATATTTAGATCGAATACATCATCCAAAATGTCGACCAGTACCCCCGAAGCGGTGAAGAAATTACTCGAGAACATGCAGACGGATCTGCGGTCCCTGTCCATGGAATGCAAGAAGAAATTCCCCCCAGTCAAAGAGGCTGCTGAGTCCGGGATCGTCAAGATCAAGACCATCGCCGCGAGGAACACCGACATCTTGGCGTCCCTGAAGGAGAACAGCTCGGAGGTGGTCCAGCCGTTCCTGATGGGCTGTGGCACCAAGGAGCCCAAGATCACCCAGCTGTGTCTGGCTGCTGTCCAGAGACTCATGACCCACGAGGTGGTGTCTGAGGCTGCAGCAGGGAACATCATTAACATGCTGTGGCAGTTGATGGAGAACGGGCTGGAGGAACTGAAGCTGCTGCAGACTGTCCTAGTGCTGCTCACCACCAACACTGTAGTACATGACGAAATACTCTCCAAGGCCATCGTGCTGTGTTTCCGCCTGCACTTCACCAAGGACAACATCACCAACAATACGGCCGCCGCCACCGTGAGACAGGTCGTCACCGTGGTCTTTGAGAGGATGGTCGCCGAGGACGAGCGCTTCAAAGgcaTCGTAGAGCAGCCTACTCCAGTCCAGGGTAACACGAACCGGAGGTCTGTCAGCACCCTGCGGCCCAGTGCTAAAGACGCCTACATGCTGTTCCAGGACCTATGTCAGCTAGTGAATGCTGATGCCCCCTACTGGCTGGTGGGGATGACAGAAATGACGAGGACGTTTGGTCTGGAGCTCCTGGAGTCAGTCCTCAACGACTTCCCTGGGGTCTTCCTGCAGCACCAGGAGTTCAGCTTCCTGCTGAAGGAGCGTGTTTGTCCGCTGGTCATCAAGCTGTTCTCCCCCAACATCAAGTTCCGCCAGGGGAGCAGCAGCGCTGCCTCGCCGGCCCCTGTAGAAAAACCCTACTTCCCCATCTGCATGAGGCTGCTCAGAGTGGTGTCTGTGCTCATCAAACACTTCTACAGCCTACTGGTGACGGAGTGTGAGATCTTTTTGTCCCTGTTGGTGAAGTTCCTGGATGGGGAGAAGCCTCAGTGGCTCAGAGCCGTGGCCGTGGAGTCCGTCCACAGGCTGTGTGTACAGCCACACCTGCTACGgtctttCTGCCAGTCCTATGACATGAAGCAGCACTCCACCAAGGTGTTCCGGGACATCGTTAACGCCCTGGGCTCCTTCATCCAGTCCCTCTTCATCGTCCCCAACACAGGCAACCCTGCTGCCACCAATGCCCCTGCTGGTGGGTCTGGGTCGGGGGCCCAGGCGGCTGCCCAGGGTGGTCCAGGAGCCGGAGGTCAGGGTGGGAGTCTGATCACTCAGGCTGCCTTCGAGTACCGCGGTACTTGGATCCCCCTCATGACCGTCAGTGTGCAGGGCAGCGCCAAGGCTACCTATCTGGAGATGTTGGACAAGGTGGAGCCCCCGTCCATCCCAGAGGGTTATGCCATGTCTGTGGCCTTCAGCGCCCTGCTGGACCTGGTCCGAGGCATCACCTCCATGATAGAGAGAGAACTggccaaggaggaggaggaggtggctgTACGCAGGGAGGCCAACCCAGACCAGAACGCCCAAGCTGAGCCTGCCCATCTCGTCTGGGAGGAGATGGTCAGTGCGTGTTGGTGTGGTCTACTGGCTGCCCTCTCACTCCTATTGGACGCCAGTACTGATGAGACGGCGACAGAGAGCATCCTGAAGGCGGAGCTGACCATGGCGTCTCTGTGTGGTCGTCTGGGCCTGGTCACGCCCCGCGACGCCTTCATCACAGCCATCTGCAAGGCCTCATTGCCCCCACACTATGCCCTGACTGTCCTTAGCAGTAACGCAACCAACCTCAACAACAAGGCCTACTCTATTCAGGGCCAGACTGTGCAGATCATCAGTCCCTCCAGTGAGTCTCATCAGCAGGTGGTGGCTGTGGGACAGCCTCTCACTGTACAGCCCCAAGGCACTGTGGTGCTGACGGCTAAGAATATCCAGTGTATGCGGACCCTGTTGAACCTGGCCCACTGCCACGGGGCAGTGCTGGGTACCTCCTGGCAGCTGGTGCTGGCCACGCTGCAGcacCTGGTGTGGATCCTAGGCCTGAAGCCTGGGGTTGGAGGTGCTCTGAAGCCTGGTCGTGCAGTAGAAGGGCCCAGCACGGTGCTGACCACGGCTGTGATGACAGATCTGCCTTTCATCTCCAACATCCTGTCGAGACTCTTTGAGAGCTCCCAGTACCTAGATGACGTGTCACTGCACCACCTGATCAACGCActgtgctccctctctctggaggCTATGGAGATGGCCTATGGGACTAACAAGGAGCCGTCTCTATTTGCGGTAGCCAAGCTGCTGGAGACCGGCCTGGTCAACATGGATCGTATAGAGATCCTGTGGAGGCCCCTCGCTGGACATCTGCTGGAGAAGGTCTGCCAGCACCCCAACGCCAGGATGAGAGAGTGGGGGGCTGAGGCTGTTACCGCCCTCATCAAAGCTGGCTTGGCCTACAAGCACAACCCCCCTCTAGCACAGAACCAGAGGCTGCAGCTCCTGCTGTTGAACCCTCTGAAGGAGCTGTCCAACGTGCTCCATGCAGACATCCGTCAGAAGCAGCTGGAGAGCGTGCTGCAGATCCTCCAGAGCCAGGGAGACAGTCTGGGTCCTGGCTGGCCCTTAGTGCTGGGGGTCATAGGGGCCATCCGCAACGAccagggAGAGTCGTTGATCCGAACAGCCTTCCAGTGCCTGCAGTTGGTGGTGACTGACTTCCTCCCCACCATGCCTTGCATGTGCCTCCAGATCGTAGTGGATGTCGCCGGCAGCTTCGGTCTCCAGAACCAGGAACTCAACATCAGCCTCACCTCCATAGGACTCCTGTGGAACATCTCCGACTACTTCTTCCAGAGGGGTGAGGCCATCACCCAGGATCTGGAGAGGGAGGAGGCCGCGCTGCAGAAGCAGGCTCGGGAGAAGGGCGAGCCCCTGAACAGGCCCTTCCACCCGGCCCCTCCCTTCGACTGCCTGTGGCTGTGTCTGTACGCCAAGCTGGGCCAGCTGTGTGTGGACCCCCGGCCCGCCGTCAGGAAGAGCGCCGGTCAGACCATGTTCTCCACCATCGCTGCCCACGGCACCCTGCTGCAGCAGTCCACCTGGCACATCGTGGTCTGGAAGGTGCTGTTCCACCTGCTGGACTGTGTGAGGAAGTCTTCCACCACGGCCGACAAGGAGAAGATTGAGTCGGGGGGCGGGAATATCCTCATCCACCACTCACGGGACACGGCTGAGAAACAGTGGGCGGAGACCTGGGTGCTGACGCTGGCAGGGGTGGCTCGTATCTTCAACACCAGGAGATACCTGCTGCAGCAGCTAGGTGACTTCTTCAAGGCGTGGGAGGTGCTGCTGGACCACATCCAGTCTGCTGCCCTCAGTAAGAACAACGAGGTCTCCCTGGCCGCACTCAAGTCCTTCCAAGAGATCCTCCAGATCGGCACGCCCGTCAAGGACTCCGCCATGCCCACCGAGGCCCTCGCCCTGGCCGTGATGGGCGTCCCCCCTGTCCTCATCGACCCCCTCAGCGCCTCGGGACCCGGCAGACACCTGCTGCGCTCCGACTCGATGCTCGAGAGGCTGACGCGCTACAATGGAGCCGAACTCCAGGCCCCTCCCCAGGGGGAGGAGTCTGCGCTGGAGGACGCAGCTCTGTGGTGGTCGGCGTGGAACACCTGGTACCGGACGGGCACGGACAGCACGAGGCCCCCTAGTGGCGGGACGGGGACAGACAGACCCTCCTTCGTCCCCAGCCAGCCCTTCCTGACAGCGTTAGTCCAGATCGTCCCTGCCCTCTACCAGCACATCGAGACTGGCTTCAGCATGGAGGACCTGAGGAAGCTGGGGGTGATCCTCCACGGGGCCGTGTCCATACCCATCAGCAGTGATGCCTCGCCCTTCATCCTGCCCTCCTACACCGAGGCTGTCCTCACCAGCCTGCAGGAGGCCGTACTCACAGCACTCGACGTGCTGCAGAAGGCCATCTGTGTGGGCCCAGAGAGCCTGCAAGTCATGTACCCGGCCATATTCGAACAGCTGCTCCTCTTCGTCGAGTTCTCCTGCAAACCCCCCCAGTATGGCAAGCTGGAAACCAAACATGTGGCCAACGCTAAATACAACCAGATCCAACTGTTTACACCGGCGGAATGGGTTGCCTTAAACTACGTGCCCTTTGCCGAAAGGTccttggaggtggtggtggaccAGTACCAGAAAACAGCCtgtcacaaagctgtcatcaacgaGAAAGTCCTTCAGAACATCATCAAGACCCTGCGGATGCCCCTGGGCCTGAAGTATGCGTGTCCGTCAGAGAGCACGTGGAAGCTGGCCGTGTCATCCCTGCTCAAGGTGTTGTCCATCGGGCTGCCCGTGGCCCGCCAGCATGCCTCCTCTGGGATGTTTGAAACCATGTGGCCAGAGCTGGCCAACGCCTTCGAAGATTTCCTCTTCACCAAAAGCACACCTCCAGACAATGTGTCCATCCAGGAGTTCCAGAAGAATGAAGCCATTGACGTTGAGGTGGTGCAGCTGATCAGCACAGAGATTTTACCGTTTGCCAACTTCATCCCCAAAGACTTTGTTGGTCAGATTATGACCATGCTCAATAAAGGATCCATTCACTCACAGTCCTCCTCATTTACAGAGGCAGAGATAGATGTGCGGATGCGGGAGGAGTTCTCCAAGGTGTGTTTTGAGACGCTGCTCCAGTTCTCCTTCAGTAACAAGGTGTCCACGCCCCAGGAGGGCTACATCTCCCGCATGGCCCTCTCCGTGCTCCTCAAGAGGTCCCAGGACGTGTTGAGGCGCTACGTGGACGATGAGCGGCTGAGTGGACGCTGCCCGCTGCCCAGGCAACAGGTGACCGAAATCATCTTTGTCTTAAAAGCTATCAGCACTTTGATGGACTCACTTAAAAAGACCCAGCCAGAAAATGTGGATGGGACTACATGGGCCCAGGTGATTGCCCTGTACCCTACACTGGTGGAGTGCATCACCTGCTCCTCTTCTGAGGTCAGCTCAGCGCTGAAGGAGGCCTTGGGGCCCTTCAAAGACTTTATGCAGCCCCCTGTCTCCAGAGTTCAGAACGGAGAATCCTGACCAGACCAACCCCCTTTTTATAATGAAGGAATTCCTAATGAATGTGTCCTCCTGAGACCCAAACATACACTTCTTCATACAAGTGGACAGAGGGATAGACGGACGGGCTCTTTTACTCCCATGTGAGCCCATCTAACAGACAGTAACCCGTGGTAACTGAGCTCCCCCCGCGACAGCTCAGTCCACAATGACGACGACTGACCTGCTACACATGACATCATCAATGTATGCTTCTAAAACACTTTGGTTGATACCACCTCCCATTCTTATTCTGACTGGCTGGACTTGTGTATTAACtgctacagtaaaaaaaaaaaaataatgttttcttTGTGTTTCGTTTGTTTTATTTGGATTTCCTGAAAGGAGAGTCGATGTACAGTGTGTGGTGACAGTGTTAATGATGTAATTAAGAAAAAACAAAGTACTTGGGCTATATGGATCTTTAAgaaaagggggtggggggtggtgaCATTTTCAACAGCCaggattttatttaaaaaatcttACTGTAACATTCCATGTACTCTATTAGCCGGCGTGAGAAGGGATGTATTTGTCTGTATAAAATAAATGGGACAGTTCTACAGTCAATTATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191658 lncRNA downstream 223022 61944059 ~ 61944396 (-) True G168289
TU191656 lncRNA downstream 223442 61943657 ~ 61943976 (-) True G168287
TU191655 lncRNA downstream 224750 61942450 ~ 61942668 (-) True G168286
TU191650 lncRNA downstream 228795 61938403 ~ 61938623 (-) True G168281
TU191635 lncRNA downstream 239862 61927320 ~ 61927556 (-) True G168266
TU192156 lncRNA upstream 5553 62223185 ~ 62255561 (-) True G168766
TU192755 lncRNA upstream 385141 62602773 ~ 62602987 (-) True G169349
TU192756 lncRNA upstream 385791 62603423 ~ 62603975 (-) True G169350
TU192757 lncRNA upstream 387034 62604666 ~ 62605407 (-) True G169351
TU192752 lncRNA upstream 393732 62611364 ~ 62612531 (-) True G169346
XM_021567539.2 mRNA downstream 703116 61436215 ~ 61464302 (-) False LOC110493282
XM_036952561.1 mRNA upstream 6301 62223933 ~ 62258267 (-) True slc6a13
XM_021567656.2 mRNA upstream 51172 62268804 ~ 62272122 (-) True LOC110493394
XM_021567676.2 mRNA upstream 253612 62471244 ~ 62505861 (-) False wnt7bb
XM_021567684.2 mRNA upstream 253612 62471244 ~ 62508410 (-) True wnt7bb
XM_021567748.2 mRNA upstream 531372 62749004 ~ 62878134 (-) True LOC110493460
TU191507 other downstream 651762 61515237 ~ 61515656 (-) True G168141
TU191442 other downstream 675747 61490434 ~ 61491671 (-) True G168078
TU191382 other downstream 867326 61291139 ~ 61300092 (-) True LOC110493186
TU191365 other downstream 911403 61254512 ~ 61256015 (-) True G168021
TU191197 other downstream 1192397 60974762 ~ 60975021 (-) True G167866
TU193660 other upstream 929142 63146774 ~ 63150851 (-) True LOC110493507
TU194598 other upstream 1741891 63959523 ~ 63963821 (-) True LOC110501772
TU194766 other upstream 1948331 64165963 ~ 64168398 (-) True tmem117
TU195797 other upstream 2867940 65085572 ~ 65086188 (-) True G172141
TU196875 other upstream 3165805 65383437 ~ 65383873 (-) True G173121

Expression Profile