RNA id: XM_036952598.1


Basic Information

Item Value
RNA id XM_036952598.1
length 2981
RNA type mRNA
GC content 0.51
exon number 17
gene id fbln1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62283204 ~ 62369308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATTTCAACTTATTTTAGAAGTAGTGAATCATGCAAGGGGGTCCTTATATTTGAGCACTACCGTAGCTACATTTAATGTTCCCACGTATCAGTTTGTAACATTTTGTTTTAAAGGATCAGATTGTAAGCAGTTGAATTGAATCTTTAGATGGAGTCTGCATATCAGAACAAGAACCCTGGAATCCTTATCCAGGTAATAAGACCCAACTTCCCTCAGACCCTACCAGCTTCCCTCCCATACAGGACTGGTGGAAAACAGATCTCCATAGATGAGTGCTGTAAGGATGGTCGGGTTCGGGGCATTGACAACCAGGACTGCACAGCCATCCCTCTCATCTCTGAGTCCACCACGTGCAGGATAGTGCAGGAGCAGTGCTGCGCTGCGGTTCTGGAGGACAATATCTGCACCAGTGGCATCAACATGGCCAAAGAGCAGGGGGTCTGTGACACACAGTTCACTGGAAGCACCTGCGAGACCAAGActgccaagATGTGCTGTGACTGTTGTCTGCTGGGCCGGGCTGCTCGCGAGCATGGTCTGACCTGTGACCACAGCCTGTCTCTGGGCTATCAGTGTGGCCTGGTGTCCCGGGCCTGCTGCGATGACGGAGCCCCTGATGTGGAGACCAGCAACTCCCTGGTTTCTGACAAAGACAACGAGACCCTCACTGAGAAGGAGAATCCCTTACCGAATAACATGTGCAGCAGCGGATTAGCCAAGTGTGCACAGGAATGTGTGGGCAACAGCACCTGTGCCTGCTTCAAAGGTTACaaactcaaaccagatgggaagaACTGTGAGGaTATAAACGAGTGCCTGCTGGGGGCCAGTAACTGCAGAGGAGGCGAGCACTGCATCAACACAGTGGGGTCATTCCGTTGCCAGAGAGAGGTCAGCTGTGGTACTGGCTACGAGCTCACGGACAGCAACAACTgcaaagACATTGACGAGTGTGAGTCGGGCACCCACAACTGCTCCCCGGACTTTGAGTGTCAGAACACTCAGGGGTCGTTCCGCTGTCTGCCCAAGAACCAGTGTGGCGATGGATACATCCAGGATGCCATGGGCAGCTGCATCGACATCAATGAGTGTCTGGCCCAGACAGAGCCGTGCCGCCCTGGCCAGTTATGTATGAACACGATGGGCTCCTTCACCTGCCAGAGAAACTCTATCAACTGTGGCCGGGGATACCACCTCAACGACGGCGGCAACCGCTGCGTGGATATCGATGAGTGTAAGGGTCCTGACGGAGCGTGTGCAGGCCACGGCTGTATCAACCTGGTAGGATCGTTCCGTTGTGAGTGTAAGGCTGGCTTCATCTTCAACAGCATCAGCCGCGTCTGCGAAGATATCAACGAGTGCAGGCACTACCCTGGGCGCCTCTGTGCCCACAAGTGTGAGAATGTCCTGGGGTCCTACAAGTGCAGCTGCACCCAAGGCTTCAAGCTGGCCAGCGACGGCAGGAACTGTGATGATCTAAATGAATGCGAGAGCAGCCCCTGCAGTCAAGAGTGTGCCAACGTGTATGGCTCCTACCAGTGCTACTGTCGCCGTGGCTACCAGCTCAGTGACATAGATGGCATCAACTGTGAAGACATTGATGAGTGTGCCCTGCCCACCGGGGGTCACATCTGCTCCTACCGCTGCAACAACACCCCTGGGAGTTTCTACTGCACCTGCCCCGCCTCCGGCTACACCCTGGCTCCCAATGGACGCAGCTGCCAGGATGTTGATGAGTGTgtgacaggaacacacacatgcTCTGTGACAGAGAGCTGCTTCAACGTGCAGGGTGGATTCAGATGCCTGTCATTCGAGTGTCCGACCAACTACCGCCAAGCAGGGGAGATGGCGAGGGTTGAGCGCTCAGACACCATCCGCTGTGTGAAGTCATGCCAGCCCAACGACATCGGCTGTGTCCTGGACCCCGTACACTCCATCTCCCACACCGTCATCTCCCTGCCCACCTTCAGGGAGTTCACCAAGCCAGAAGAGATCGTTTTCCTGAGAACCATGTCGCCGGCGCACTCCTCCCCCCAACTCAGCTCTGACATTGTCTTCGACATTCTGGAGGGAAACGTCCAGAACTCCTTCGACATCGTCAAGCGACAGGAGCATGGCATGATTGTGGGTGTCGTCCGACAGGTGAAGCCCCTGATTGGCTCGCTAAACATGGTGTTGAAGCTGGCTATGAACTATGTCACCTCTGGGGTGGTGTCTCATCGGAACATCGTCAATGTCCACATCTTCGTTTCCGAGTTCTGGTTCTGAGTTTAGGACATGCCACCGCCACCACCACACATAGCCACACAGTTCTACCACAGTACTACCAGCACCGTCACATAATAGCCACAAAGTACTACCAATTACACATTACTACCACCCAGTACTACCACCGTACTATAACTTACCGTCCTAACATGAAGAGAAATTTGAATTCCGAGTGCATGGAGGAGAAAAGGAAGATTATTTGGGTGTATAACTACAAGGATGTGCATGCACACCATTGGGAGGTATAACACAAGTCATTCCTGATAAACCCAACGCAACACATTGTAACTGACTTTTGTTCATTTTTCGTTCCGTTTCCATTAAGATGAACAGACCACAAGCTGCTTAATCACTTTTTATATTGTATGAAACTAAGGCACACTTCCCAGTCAGTTTACATGTAATAGAAATTGATGTAACAAGCCAAGCCATGAGTGGACGCATGCATCTGGCGCACAGAGCTTGATGTGAAGACCTCACATACTGTATCGTGTAATGTAAGCAtgctgtcatgctgaaagacaatAGAATGTGATTGTGAATTGAAAGGGCATGCGTAGACATGGAGAGGTGAAACACCATTGAAGGATTTAACAGTTGAATGTAACACTTACCCATAGGTTCATGGCGTGTATTACATTTCCTTTTCTTACGTTATACACTGCGAAAGGTGTTACGGTACTAAATAAACCATCTTGTTTTTACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191837 lncRNA upstream 87744 62194155 ~ 62195468 (+) True G168460
TU191782 lncRNA upstream 165615 62117175 ~ 62117597 (+) True G168409
TU191705 lncRNA upstream 244389 61991511 ~ 62038823 (+) True G168335
TU191662 lncRNA upstream 336768 61946204 ~ 61946444 (+) True G168293
TU191660 lncRNA upstream 337794 61945109 ~ 61945418 (+) True G168291
TU192380 lncRNA downstream 100621 62469929 ~ 62471380 (+) True G168985
TU192381 lncRNA downstream 104832 62474140 ~ 62476409 (+) True G168986
TU192386 lncRNA downstream 112819 62482127 ~ 62482380 (+) True G168991
TU192387 lncRNA downstream 113432 62482740 ~ 62482954 (+) True G168992
TU192429 lncRNA downstream 151252 62520560 ~ 62530202 (+) True LOC118941151
XM_036952547.1 mRNA upstream 128716 62092419 ~ 62154496 (+) True ppm1h
XM_021567628.2 mRNA upstream 220468 62057929 ~ 62062744 (+) True avpr1aa
XM_036952522.1 mRNA upstream 367093 61910943 ~ 61916119 (+) True LOC110491137
XM_036934623.1 mRNA upstream 378027 61903331 ~ 61905185 (+) False LOC118937286
XM_036934069.1 mRNA upstream 402555 61870393 ~ 61880657 (+) False LOC118936783
XR_005037452.1 mRNA downstream 151224 62520532 ~ 62530986 (+) False LOC118941151
XR_005037456.1 mRNA downstream 192875 62562183 ~ 62618837 (+) False LOC110493430
XR_005037458.1 mRNA downstream 198046 62567354 ~ 62618837 (+) False LOC110493430
XR_005037455.1 mRNA downstream 198902 62568210 ~ 62618837 (+) False LOC110493430
XR_005037453.1 mRNA downstream 198903 62568211 ~ 62618837 (+) False LOC110493430
TU190972 other upstream 402788 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 555758 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 750885 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 1050667 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 1208621 61062593 ~ 61074591 (+) True G167288
TU192528 other downstream 416050 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 1451153 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 1503940 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 3161838 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 3224209 65593517 ~ 65640976 (+) False jph3

Expression Profile