RNA id: XR_005037452.1


Basic Information

Item Value
RNA id XR_005037452.1
length 1483
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118941151
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62520532 ~ 62530986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTCACTCTACAAGCAGTGTGGCAGTGTGTGAATGAGAGAAAAAGCACTGTGCAGCACCACCTTCATTACTCACCGCACCGGtgtgtggcCGAGGTGACAACAGATGGAGACGGACTCGGAGAGGGAGCCATTTTCAAGTCTACACTGAAGCCATTACCTCAGCTGCCACAGAGATGACAATGACATTTTCAGTCACCGCGTAACTCAGCTATAAACTGGAGCTGTTTGACATGAAAGGCATCTATTTCGTTTTATGTTGCTGTGGTGCATGAGTTCAATACATGTGTTTTCTTTGACAATTAAGAAGACAGTTTGGTCTGTAGTTAAACAATTACTCAGAGGCCACACTTAAGTGTAAAACAGACCACCGTCAGGTCCTGCATGCATGAGGCCTGTCTAGAGAGACTCACTGGGGAGCCAGTGATTATACAGTGTGATATGTTTATGTGGAATAAGTTGCAATGACTTCATTCCAGAGGCCCTCTTGAGGCCTTCTTTTTACACTGTAAAACAAGCTGGGATCAATAATTAGTATAGCAAGCATAACTCggcaacaaatcaaatcaaatgtgatttgtcacacacgccgaatacaacaggttacagtgaaatgcttacttacaagccctataGCCCGATAGTTAGTATAGTTCGTATACTGAGGCCCTCAGTAACCTATTAAAACCAGACGGCGATATACAAAACACAGCTTACCTTGTGACACACTGTCTAAGAAACGGTTAGTTTAGATAATACCTCATTTAGCCTCTGTTGctgtgaataaataaatacagatgCACATATAAATGCTGAAGTGACTGTTGTGAAGAGAGGCTAGAAATAGCATGCAGTGGCTCCAAACACTGTGTCCCTGGGAATTTATTTCTTCTTCACTGAATTTATTTGCTTTATGGTCAAATCGGCCACCTCCGTATCTGGCGAAGTCAATGTTACACCAGGGAGTGGTTGGCTATGAGTGGATTAAGACTTTTCCATTGACCAGCGGTTTACAGAGGTTATAATCTTGGGTCCCATTGAGTGATTTCCCGTTAAGCCCAGGAAAGCTGTCAAATGTTACTTACTGGAATCCAATGGAATTTGTAGCTAGCGCTGAGTCGTTGGCAGTGATGTACATGGACACAAAGCTCACAGGAAGTTGCAAATAGGACTGTCTGTGGACAATGAGGTTCTCTTTTATATAGtattgaacagaacagaacagaacagaacagggcaaTAAACTAGTATTTATTTTATCATGTTTTACTGAAAACATGGCTGTAATGGCTCCCAAACGTACACAGATCTGGCGCCGAGTGTTGTTGGACAGATGAATAATTTCTTAACCAAGAGATTTAATCATTTGAGGGATATATTGAAGCTAGCGGGTGGTGGGTCTAACCCTGGCAGTCTTGCATGATATTCAGACCTGCCTTTCATGCACATTGTCATTCTATGCatgataaaataatatatatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192387 lncRNA upstream 37578 62482740 ~ 62482954 (+) True G168992
TU192386 lncRNA upstream 38152 62482127 ~ 62482380 (+) True G168991
TU192381 lncRNA upstream 44123 62474140 ~ 62476409 (+) True G168986
TU192380 lncRNA upstream 49152 62469929 ~ 62471380 (+) True G168985
TU191923 lncRNA upstream 204560 62315751 ~ 62315972 (+) True G168539
TU192407 lncRNA downstream 37922 62568908 ~ 62589395 (+) False LOC110493430
TU192413 lncRNA downstream 80378 62611364 ~ 62612530 (+) True G169015
TU192410 lncRNA downstream 86117 62617103 ~ 62617350 (+) False LOC110493430
TU192405 lncRNA downstream 86552 62617538 ~ 62618766 (+) True LOC110493430
TU192411 lncRNA downstream 90246 62621232 ~ 62621911 (+) True G169013
XM_036952598.1 mRNA upstream 151224 62283212 ~ 62369308 (+) False fbln1
XM_036952590.1 mRNA upstream 151224 62283214 ~ 62369308 (+) False fbln1
XM_036952607.1 mRNA upstream 151228 62318250 ~ 62369304 (+) True fbln1
XM_036952617.1 mRNA upstream 174582 62283204 ~ 62345950 (+) False fbln1
XM_036952547.1 mRNA upstream 366036 62092419 ~ 62154496 (+) True ppm1h
XR_005037456.1 mRNA downstream 31197 62562183 ~ 62618837 (+) False LOC110493430
XR_005037458.1 mRNA downstream 36368 62567354 ~ 62618837 (+) False LOC110493430
XR_005037455.1 mRNA downstream 37224 62568210 ~ 62618837 (+) False LOC110493430
XR_005037453.1 mRNA downstream 37225 62568211 ~ 62618837 (+) False LOC110493430
XR_005037457.1 mRNA downstream 37737 62568723 ~ 62589425 (+) False LOC110493430
TU190972 other upstream 640108 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 793078 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 988205 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 1287987 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 1445941 61062593 ~ 61074591 (+) True G167288
TU192528 other downstream 254372 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 1289475 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 1342262 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 3000160 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 3062531 65593517 ~ 65640976 (+) False jph3

Expression Profile