RNA id: NM_001197211.1


Basic Information

Item Value
RNA id NM_001197211.1
length 1395
RNA type mRNA
GC content 0.59
exon number 6
gene id pparab
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62640508 ~ 62704574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCGAGCCACTACCGGCCGCCGTCCCCCCTGGAGGATTCGGTGCTGGGCAGCCCGGTGTGTGGGGACTTCCTTGGGGGCATGGAGGAGCTGCAGGACATCCCCCAGTCCATCGACGGTGACACCCTCAGCTCCTTGGACGTCCCTGAGTACCTGTCCCAGTCGAGTAACGGCTCTGAAGGATCCACCGTTCTAGatGCTCTGACCCCAGCATCCAGCCCGTCGTCAGGGGGGTATGGGGCAGCTGCAGGGCTGGAGGagttctcctccacctctctcaacCTGGAGTGTCGGGTGTGTGCCGACCGCGCCTCCGGATACCACTACGGAGTTCACGCCTGTGAGGGCTGCAAGGGTTTCTTTCGGCGGACCATCCGCCTGAAGCTGGAATATGACAAGTGTGAGCGTCACTGTAAGATACAGAAGAAGAACCGGAACAAGTGCCAATACTGCCGCTTTCAGAAGTGCCTGTCTGTGGGCATGTCCCACAATGCGATCCGTTTTGGTCGGATGCCCCAGTCTGAGAAGCTGAAGCTGAAGGCAGAGATCCTGACGGGTGACAGGGAGGTGGAGGACCCCCAGCAGGCCGACCAGAAGACTTTGGCTAGGCACATTTATGAGGCCTACCTCAAGAACTTCAACATGAACAAGGCCAAAGCCCGCACCATCCTCACTGGCAAGACGAGCACTCCACCCTTCGTCATCCATGACATGGAGACCCTCCAGCTGGCAGAGCAGACCCTGGTGGCTAAGATGGTGGGCACGGCCGGTGGCCATCTGCTTGAGAAGGAGGCTGAGGTCCGCATCTTCCACTGCTGCCAGTGCACCTCCGTAGAGACGGTCACAGAGCTAACCGAGTTCGCCAAGTCTGTCCCCGGCTTCTCCAGCCTGGACCTGAACGACCAGGTGACTCTGCTGAAGTACGGCGTGTATGAGGCACTGTTCGCCCTGCTGGCATCGTGTATGAACAAGGATGGCCTCCTGGTGGCCTACGGATCGGGCTTCATCACCAGGGAGTTCCTCAAGAGTCTGAGGAGGCCCTTCAGCGACATGATGGAGCCAAAGTTTCAGTTCGCCATGAAGTTCAACGGGCTGGAGCTGGATGACAGTGACCTGGCTCTGTTTGTGGCTGCCATCATCTGCtgtggagACCGCCCTGGCCTGGTGAACGTGACCCACATTGAGTGCATGCAGGAGAACATTGTTCAGGTGCTGCAGCTCCACCTGCTGGCCAACCACCCAGACGACACCTTCCTCTTCCCCAATCTGCTGCAGAAACTTGCCGACCTCCGTCAACTGGTCACCGAGCATGCGCAGTTGGTCCAGGAGATCAAGAAGACAGAGGACACGTCACTCCACCCCCTGCTGCAGGAGATCTATAGGGACATGTACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192467 lncRNA upstream 49916 62631869 ~ 62632110 (+) True G169069
TU192414 lncRNA upstream 56232 62625076 ~ 62625794 (+) True G169016
TU192411 lncRNA upstream 60115 62621232 ~ 62621911 (+) True G169013
TU192405 lncRNA upstream 63260 62617538 ~ 62618766 (+) True LOC110493430
TU192410 lncRNA upstream 64676 62617103 ~ 62617350 (+) False LOC110493430
TU192402 lncRNA downstream 2296 62701878 ~ 62704574 (+) True pparab
TU192480 lncRNA downstream 12276 62711858 ~ 62712057 (+) True G169082
TU192506 lncRNA downstream 60774 62760356 ~ 62760657 (+) True G169108
TU192512 lncRNA downstream 65062 62764644 ~ 62764848 (+) True G169114
TU192513 lncRNA downstream 66558 62766140 ~ 62766370 (+) True G169115
XR_005037456.1 mRNA upstream 63189 62562183 ~ 62618837 (+) False LOC110493430
XR_005037458.1 mRNA upstream 63189 62567354 ~ 62618837 (+) False LOC110493430
XR_005037455.1 mRNA upstream 63189 62568210 ~ 62618837 (+) False LOC110493430
XR_005037453.1 mRNA upstream 63189 62568211 ~ 62618837 (+) False LOC110493430
XR_005037457.1 mRNA upstream 92601 62568723 ~ 62589425 (+) False LOC110493430
XM_021567722.2 mRNA downstream 23863 62723445 ~ 62737914 (+) False LOC110493442
XM_036952649.1 mRNA downstream 23863 62723445 ~ 62737914 (+) False LOC110493442
XM_021567713.2 mRNA downstream 23864 62723446 ~ 62737914 (+) True LOC110493442
XR_005037459.1 mRNA downstream 227164 62926746 ~ 62927472 (+) True LOC118941152
XM_021567767.2 mRNA downstream 307741 63007323 ~ 63022862 (+) True mrps35
TU190972 other upstream 801602 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 954572 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 1149699 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 1449481 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 1607435 61062593 ~ 61074591 (+) True G167288
TU192528 other downstream 85776 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 1120879 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 1173666 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 2831564 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 2893935 65593517 ~ 65640976 (+) False jph3

Expression Profile