RNA id: XR_005037466.1


Basic Information

Item Value
RNA id XR_005037466.1
length 1488
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110501771
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 63051345 ~ 63053275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCTTGCTTTCCTGAAGCCAGCTTGGTGGATTCCAAGGAGGTCCATTTCCTTAGTGTGGCCGCTCAGTCTTTGGGTGAGTACTCTCTCCAACAGCTTCCCGACATGACTGAGGAGGCTGATTGGTCTATAACTTGTGACGTTGTCTGGGTCTTTGCCAAGTTTGTGGATCATTATGACAACGGCAGATTTTCAGGGCAGGGGAAAGTAGCCTTCCGTGAGACATGCTGTGAAGAGGTTAGAAAGGAGGTGCAGGTATTCATCAGGTGCTTGTTTGATGAGTGTGCTGTCAATGTTGTCTTCCCCTGGTGCTTTGCTTTTTGTTTTTTTCAGGTGAGTTGACTTCTTCAATGCTAACAGAGCGGGTGAGAGGATGGTCTTCTGGTGTCGGATTTGAGGTGTACACTTTTCTGCATTTCTCTGTCGATGATGATTTTCCAGTCTTTGTCAAAGAGAGGATCATCGGGACAAGAATGAACATTTTAAGGCCCGGGGGTTGGTGTCTGTATCTAGCTGGTGATTGAAGGCAGTCCATTGTTTCTGTTTGTGGAGGGTGCTTGTTGGagttggagagagaaggaggcaaGGACAGGAAGGTGGTCACTTCCCACGTCATGGCTGACGGAGAAGCTAAGAAGTTTAGCAGCCAAGTTCAGGGAGCAGAGGACAAGATCAAGGATGTCTGCCGTGGAGGTTGAAGAATGGATGTGTGTGGGCTCGTTGGTGTTGAGAATGGCCAGGTTTGTGCTGTTGAGGATATCCCTTAATACTCTTCCCGATGTGTTTGTagtattacagttgaagtcgatgTGTTTGGCATTAAAATCTCCCATTATGATGGTATGGCCGTTGTTGTCTGCAAGTACAGGGCTAGCTGTGAGTATTTAACCAATCAGAGAATGCGTGATCAGTGCATGGGCAGTGGTGGGGTGCATGGGGGAAGAGTCTGATTGGCTGAAGCCACAACCTGGGGTGATCGATAACTCTCACCTGAGGGGGAGAGCTAGACTACATGGTGCCAGACAAATGTAGACAACATACACGCTGGAAATTAGACCCACAGCGGCCTCGGCACGGGATTCTGTAACACCTTGGATGCCTTACTTCTTGAAgtttgcagtttaaaaaatatacttttttttaccctttagtgtgtgtactttatacttgggatatcgcTTTTTAACATGaaaaattacaacaacaaaaacaaaattgCTGGAAGACGTCTTCAAGATTTGAATTAACATGGGATGTGTTCTTCACACCTTTTACCCAAAACCAGtaacagcaccatctagtggtcagaacctggtaatatcCGATTGTATGATGGGACATAAACCTAACAACTTCAATGcctaatttctctgaacaggggaGATAAACATCCCTAAATTCACTGAGGACACATTACATAGCTTGAATAAGCAATCCTCCAAGCCACAGCTTTATACTACTTGTCAAACACAGAGTATTATATACTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193097 lncRNA downstream 2379 63047642 ~ 63048966 (-) True G169673
TU193095 lncRNA downstream 4376 63046764 ~ 63046969 (-) True G169671
TU193087 lncRNA downstream 12662 63038228 ~ 63038683 (-) True G169663
TU193085 lncRNA downstream 14185 63036700 ~ 63037160 (-) True LOC110493479
TU193066 lncRNA downstream 24100 63026960 ~ 63027245 (-) True G169643
TU193743 lncRNA upstream 198127 63251402 ~ 63259031 (-) True G170268
TU193710 lncRNA upstream 229387 63282662 ~ 63351081 (-) True shisal1b
TU193837 lncRNA upstream 456332 63509607 ~ 63904078 (-) True G170356
TU193940 lncRNA upstream 544554 63597829 ~ 63631175 (-) True G170451
TU194015 lncRNA upstream 614613 63667888 ~ 63668507 (-) True G170526
XM_021567779.2 mRNA downstream 10836 63036389 ~ 63040509 (-) False LOC110493479
XM_036952668.1 mRNA downstream 25564 63022968 ~ 63025781 (-) True LOC118941153
XM_021579553.2 mRNA downstream 52575 62955119 ~ 62998770 (-) False LOC110501769
XM_021567748.2 mRNA downstream 173211 62749004 ~ 62878134 (-) True LOC110493460
XM_021567684.2 mRNA downstream 542935 62471244 ~ 62508410 (-) True wnt7bb
XM_036952717.1 mRNA upstream 4779 63058054 ~ 63085131 (-) False LOC110493488
XM_036952723.1 mRNA upstream 4779 63058054 ~ 63085132 (-) False LOC110493488
XM_021567791.2 mRNA upstream 4779 63058054 ~ 63089778 (-) True LOC110493488
XM_021567812.2 mRNA upstream 37085 63090360 ~ 63130536 (-) True si:dkey-82f1.1
XM_036952731.1 mRNA upstream 93494 63146769 ~ 63203951 (-) False LOC110493507
TU191507 other downstream 1535689 61515237 ~ 61515656 (-) True G168141
TU191442 other downstream 1559674 61490434 ~ 61491671 (-) True G168078
TU191382 other downstream 1751253 61291139 ~ 61300092 (-) True LOC110493186
TU191365 other downstream 1795330 61254512 ~ 61256015 (-) True G168021
TU191197 other downstream 2076324 60974762 ~ 60975021 (-) True G167866
TU193660 other upstream 93499 63146774 ~ 63150851 (-) True LOC110493507
TU194598 other upstream 906248 63959523 ~ 63963821 (-) True LOC110501772
TU194766 other upstream 1112688 64165963 ~ 64168398 (-) True tmem117
TU195797 other upstream 2032297 65085572 ~ 65086188 (-) True G172141
TU196875 other upstream 2330162 65383437 ~ 65383873 (-) True G173121

Expression Profile