RNA id: XM_021567878.2


Basic Information

Item Value
RNA id XM_021567878.2
length 2045
RNA type mRNA
GC content 0.48
exon number 13
gene id parvb
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 63249489 ~ 63262311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCACCGGGCAGgacctcacacacactctcacacacacactctctctatcacTATACCTTCACTTCGCTGCTACTCTCTGAGCACCTCTGGGATCCCTGGGCTAATTTCTGGAGACATGGCGGGCCTACTATGTGGGACCAAGAGGAAGAAACAAGTGAGTGACCTTCATGAGGAGGGGAAGAATGCCATCAACACTCCCATGCTGCCCTCTGGGACTGAAATCCACCCTGAGGACACCATGCTGGAAGAGAATGCTGAGAGGAATATGCTGGATCCGACCTCAAGGGAGAATCCAAAATTCAAAGATCTTCAGAGGGTATTGATAGACTGGATCAACAATGAGCTGGAAGAGGACAGGATCATCGTCAAAGGCTTGGAGGAGGATTGCTATGATGGACAGGTGCTTCAGAAATTATTTGAGAAGCTGTCTGGGCGTAAACTGAACGTGGCTGAGGTGACCCAGTCAGAGATAGGACAGAAACAGAAGCTCCAGACGGTACTGGAGGCCGTCAACGAGCTGCTCCGGCCTCACGGCTGGTCCATCGAGTGGAGCGTCGACTCTATCCATGCTAAGAACCTGGTGGCCATAGTGTACCTGCTGGTGGCTCTGGCCATGCACTACCTGGCCCCCATCAGACTGCCAGAGCACGTCTCTGTACAGGTGGTGGTGGTCAAGAAAAGAGAAGGCATACTGCAGACGTCTCATGTGACTAAGGAGCTGACGAGCACTACAGAGATGATGATGGGTAGATTTGAAAGGGATGCATTTGACACCCTCCTGGATCATGCACCGGACAAGCTCAACGTTGTGAAGAAGTCCCTCGTCACCTTTGTGAACAAACACCTGAACAAGCTGAACCTGGAGGTCACAGAGTTGGAGTCCCAGTTTGCTGATGGTGTGTACCTGGTGCTGCTGATGGGACTGCTGGAGAACTACTTTGTCCCCCTCTACAACTTCTTCCTCACACCAGAGAACTTTGAGCAGAAGGTTCACAACGTGGCGTTTGCCTTTGAACTAATGCAGGACGGAGGCCTGAAGAAACCCAAAGCCAGGCCGGAAGACGTTGTGAACTTGAACCTGAAGTCTACCTTGAGGGTGTTGTACAACCTGTTCACCAACTATAAGAACTCCGAGTGATGTCTACCTgccacacgcacagacacagccACAGTACAGTGTGAGGAGAATGAAGGCACTGTGTTTGTGCTACCTTCACACTGGCTGATGTCTGAACCCCTGAGGAACCCACTGGGACTAAACCAAAGGCCCACCCCTTGTATCAGTGGGATGGTCTGAAGAGACTCCGAATGTTTGTATTTAATCTCCCCAATGTCAGTATTTAAATCCTCCTTTATGCTAACCCTACCCAAGCACACGTATGTTTCATGTTTTAGTACTCAGTCAACACTGTAGAATGATTCATGCAATTGGAAAACATGGGTTTGTATTTTATGCAAAAAAGCCACTACTGCTCCATAAGAAAATATTCATGATCCACTGTTGCATATGCTGTAAGACTTGCTGTATATCATATCTCAGAAAGCTTAGTACATTATTCCCATATCATTATTATGGTATTGTTACTACATCTATTGTTCTATTTTATGTTGCCATTCCAAAATATGATATGAATGAATTCTAACAGTACTTTTAGATTTCTCCGATTGTTTATATGGACAGGTTCAAGCCATATTTCTTATCCGATGCTGACCCTGTTGCCTTTCGCCTTAAGTGCCATGTTATTCTCTTCCTACTGTACCCGAGAGAGCCACAAAGCATTGTGGTATTAACCTGCCCTTCAGACGATTCCCACTAGACCTTCCGGAGAACAGCTAGCGAGGCTCTCCACCGCGATCtagtagagagcgagagaccagAGAGCTGCATGTGGCCTACAGGAGTCCACTCATGCATTTTAGACCGAGGGTAAATTATTAAGAGGGATGAGTCAAGTCTGGATCGCCAGGATAGCAGCTTGTCACACTGCTTGTATGTATCTGCTTCGATGTCTGTCcatcccaaaataaatgtttcaACTCAGA

Function

GO: NA

KEGG:

id description
K06275 PARV; parvin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193152 lncRNA upstream 100090 63152147 ~ 63155789 (+) True G169712
TU193151 lncRNA upstream 105820 63095099 ~ 63150059 (+) True G169711
TU193099 lncRNA upstream 204319 63051349 ~ 63051560 (+) True G169675
TU193079 lncRNA upstream 211784 63043889 ~ 63044095 (+) True G169655
TU193078 lncRNA upstream 213078 63042589 ~ 63042801 (+) True G169654
TU193205 lncRNA downstream 17515 63279826 ~ 63280420 (+) True G169764
TU193488 lncRNA downstream 328538 63590849 ~ 63592262 (+) True G170035
TU193424 lncRNA downstream 445977 63708288 ~ 63710132 (+) True plxnb2b
TU193561 lncRNA downstream 499370 63761681 ~ 63763201 (+) True LOC118941167
TU193429 lncRNA downstream 504672 63766983 ~ 63786331 (+) False LOC110493594
XM_021567859.2 mRNA upstream 6963 63239052 ~ 63248916 (+) True hdac10
XM_021567847.2 mRNA upstream 17619 63226170 ~ 63238260 (+) True LOC110493518
XM_021567767.2 mRNA upstream 233017 63007323 ~ 63022862 (+) True mrps35
XR_005037459.1 mRNA upstream 328407 62926746 ~ 62927472 (+) True LOC118941152
XM_021567713.2 mRNA upstream 517965 62723446 ~ 62737914 (+) True LOC110493442
XM_021567905.2 mRNA downstream 467 63262778 ~ 63275177 (+) False parvg
XM_021567898.2 mRNA downstream 471 63262782 ~ 63275177 (+) True parvg
XM_036952823.1 mRNA downstream 263471 63525782 ~ 63710129 (+) False plxnb2b
XM_036952828.1 mRNA downstream 450743 63713054 ~ 63741924 (+) False tubgcp6
XM_036952830.1 mRNA downstream 450743 63713054 ~ 63741924 (+) False tubgcp6
TU192528 other upstream 470236 62785358 ~ 62785643 (+) True G169130
TU190972 other upstream 1375455 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 1528425 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 1723552 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 2023334 61232196 ~ 61232545 (+) True G167325
TU193588 other downstream 558150 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 610937 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 2268835 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 2331206 65593517 ~ 65640976 (+) False jph3
TU196057 other downstream 2331206 65593517 ~ 65640976 (+) True jph3

Expression Profile