RNA id: XM_036952823.1


Basic Information

Item Value
RNA id XM_036952823.1
length 9128
RNA type mRNA
GC content 0.52
exon number 37
gene id plxnb2b
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 63525782 ~ 63710132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGTAACCATTGCCTGGCAGTCGGTGATCTACAGGCCAAATGGTCTTTTGCGTTTTGAAAGGGGGAGGAGAATAATCCCTCTCCTTTCCCGGTCGATTTTGCGTTCTACCTCCCTGCGCATTTTCCACTCGCCTATAATTTCCTGGTTCTCAAACGCAATGTCACCGGAGGCGGATGTGAGCGGATCTCACAGGTGTGTCCCTTGCCAACTGAGCCATAGCTCGAGAAGAATCACACCTGGGATCACCATGTGATCCTGTACCTGGGCGTGGATAAAGTCCTGGACTCTTGTTGAGTTGTCCGTGTCGTCTTGCAGTAGGAATTGTCAACCAGTGCCCCCTTGTATTTTCGACTGAACAGTGCCTTTCTCTAACTCTCCGCGCTCTCGGGAAGATAAAATGTGAACTTTACATGCATTTTGCTTGAGGACTTATTATACATTTTTAGGGGGACTTTGAAATCTGGACAGCTCCGTGTTAGTTTCAGGCAACTACTGTTCTTCCAAGCACTTATTTACTGTGGCCACCCTGAAGAGGCCTGAATGAAAAGGAGAGCGGACGGCGAGGGGATATGATTGTGCACTTCCTGCTCGGCAACTACAGGAAGTAATTGAGCTCTACAGGAAAGATGGCGATCTGGGTCCAGgccgctcctctcctccccctgctcctcctgttCTGCCTGTCTGCAGCCGGGGGCCCGCTGCAGGAGGAGGCGGTCCTGGACTTCCCCTCCAAAACGGCCATCAACAACGTGGTGCAGGACCCTCGGAGCGGCCGCGTCTACCTGGGCGCCGTCAACACCATCTACCAGCTGGACGCAGCGCTGCGCGAGGAGGCCCGCGCCGAGACGGGCCCCAGGGAGGACGCCCGCACCTGCACCCCGCCCGTCTCGGCCTGCCAGGACACCAAGCCCAGCCCTAACGTCAACAAGCTGCTGCTGGTGCACCCGGCCAACGGCTCGCTCATCGTCTGTGGCTCCCGCTACCGGGGAATCTGTTCCCTCCTCAACCTGACCAACGTGGAGCAGCAGCTGTACTACAGCGACTCGAAGGGCGAGAGGACCTACGTGGCTAGTATCGAGGACGGGGTGGCCGTGGTGGGCGTCATGTCTACGTACGTTAAGGACGGCAACGCCTTCAATGTGTTCCTGGTGGGGAAGGGCTACGGCAGCCTGGACAGCTCCAAGCTCATCAGCACGCGCATCCTCCAGGACTACCGCGACTGGGTGGTGTTCGAGAGCATCGTCGAGGCGTCCACCGTGCAGGCCACGCCCTTCGTGCCCAAGTACCTGCACGACTTCCGCCACGCCTTCAAAGAGGAGGGCTTTGTCTacttcctgttctccaggaccatGGGAAGCACCGATAACAAGAACTTCACCTTCGTGTCTCGGCTGTGTGAGGACGACCCTCACTACTACTCTTACACAGAGCTGCAGCTTAACTGTGGCCCGGGGAACAGGTACAACAAGGTCCAGGCAGCCTATGTGGCGTCCCCAGGTAAAGAGCTGGCCCGGGGGATGACGGAGTCGGGCCAGTATGGTCAAGTACTCCCCTGGCACAAGGTGTTGTTCATGGTGGCCAGTCCCTACGATGACAGCGCTGACTCGGCCCTGTGCATGTACCCTCTAAAGGCCATCAACGAGAGGCTGGTGGACCTCATCAGCGCCTGCTACAGCGACTCGGGCAAGATCGCCGGCACCCCAGCTGTGGACATCCCCTACTCCTCCAAGACAGACGAGTTCTGCACCTCCCGCATTGATAAAGACACGCTGAACAACTTTAAGTGTGGGGCGGACTTCCTTCCAGCTCCACTGGCCAGTAAGCCAGAGTTTGCCCTGCAGGCAGAGGTGGTCATCACCAGGACGAGCATACTGACCGCTGTGGCCGTCGCCGTGGAGAACGACCACACTATCGCTTTCCTGGGGAACAGCCTGGGAGAGGTGTGCAAGGTGCATCTGACCACCAACCCAGAGGTGTACAGCAGAGGACCAGGGGACACCACGGGGGAACGAGTCAACAAAAACCTCTTCTTCGATGCCGGCCACAGCCACCTGTATATCACCACAGAGAAAAAGATCACCAAGGTGCCAGTGCAGGCGTGCCATCTGAAAACAGACTGCCAGTCCTGTGTGTCCACACGAGACCCCTACTGTGGCTGGtgtgttctggagggcagGTGTACCAGGAGGTCCTCCTGCCGGCGAGCGGAGGAGAAGAACGGCTGGCTGTGGAGCCCCAAGCAGCAGTGTGTGAAGATAGTGTCCTTCCACCCACCCAACCTCAGCTGCAGAAAGACCCAGCAGgtggagATCAACGTGCCCTCCCTCCCCTCCGTCGGGCAGGCAGACCGTCTGCACTGTGTGTTTCCCTCCTATATGAGTGAGGCTACCATGGCCTCTGGCCAGGTCACCTGTGCCCTGCCCAACCCTGCCTCTTTACCATCCACACCTGAACACCAGGATTTCGTGGCGGTACCCATTAAGATCTTTGTGAACGAGTCGGTGGAGCTGGCCACCAGAGAGTTCAAGTTCTACAACTGTTCAGCCACTGTGAGGAAGGCAGAAAACACACCGTGCATGTCGTGTGTGGCCAGTCCATGGGGCTGCCAGTGGAACACACAGGACCACACCTGCCAGGACGTGGATGGTACAGTGTCGGGCCCTCAGATCATCAAACACAGACAGGGAGCGAGGTGTCCCCAGTTTGAAAACCCTGACCCTGTGCTCATTCCTGTCGGGTTCAAAACCACCATCAGCTTCGAGGGCATCAATCTGGATGTGTACCAGGACCGGACATTCACCATCGGCACGGAGCTGATGAGGAACTTGAAGGAGGACGTCAGGTCTGAAGACGGACCCTTCTACAGTTTCAGCGGTTTTAATTTTTCCTTCGACAAGTCACAGGAAACCAACGTTCTGTTCTACGTGAAGGACAAAGAGACGGGCAGGAAGATAGACAGCACGCTGAATGTGACCCTATATAACTGCTCACTGGGCCGGGAGGATTGCAGCCTGTGTAAGAACGCTGCTCCTAAGTACAGTTGCGTGTGGTGCACCAAGAGAAAGTCGTGCGTCTATGAGAAGCTGTGTATTGACCAGGCCACAGAGGACCCGCAGGACACCGAGTGCCCTGACCCACAAATCACTGACATCATCCCTCGCTACGGACCCGTGAAGGGGGGCATCTCTGTCACCATCAAGGGCTCCAACCTGGGCATCCACAAGGATGACATCAAGGCCGTCAGTGTGGTGGGGGTCCCCTGCATACACCAGGAGGACAGATACGCCGTCTCCACCAGTGTGGTGTGCGAGATCGGCCCCTTGGACCCGCTGAGCACCAACTGGGGGCCGGTGGAGGTGGagctggagggagggaagagaggaacgTCCTCCGTTTTCTTCACATACCGGGACCCCATAGCCAGCTCGGTTCACCCCGACAGGGGCTCCAAGGCCGGGGGCATGGTCATCACCATCTCTGGCTCCAACCTGGACACAGCCACCAGGGAGGACGTCAGTGTCACCGTCGGCGGGGTGGTGTGCACTGTGGAGACTTTCGGTGCGAACATCACCTGCAGGATGGGAGAGTACCGGGCAGACAAGGTCCCCTCTGACCTGCTCATGGTCACGGTAAAGTATGGGAAGAGCACCACCACGGCCGTCCCCACAGCCTTCCAGTTCTGGGAGAACCCCACTATCCTGGACCACCACCCCAAGGGAAGCTTTGTGTGTGGTGGAAGGACCATCGTGGTGACAGGATCCGGGTTTGACCTCATCCAGAACGCCATTATGAGGGTCCAGGCCTCGGCAGACGAGTGGTCCGGCATGACTCCTACTGAGTACCTCCAGGAGGCTCTGAATAAGAACGACACGGTTCTCCGGTTCCTGTCCCCTGCCGTCAACAGGTCCTCTGAGACCCAGGTGTTCAGGACCTTCATCCAGCTGGACAACTGGGTGAGGGAGCTCAAGCCCTTCGACTACCACCCCAACCCTGCCTTCAACCCCCTCACCAAGAAGATCATCACTGAGACCTCCATCATCATCGTCACTGGCCGAGGCTTCTCCAAGGCCATGACAGCCAAGGAAGCCCAGGCGTTTGTGGGGGACATCCCCTACTTTGTCAACACCCTACAAGATGACAAACTGTTCCTGGACCCCCCATCCAGCCAGCCCCGGGCCCTCTCCAAACGTCACCGCAGACGCAGAGACACCAGCTCCGACCCATTGGACCTGCTTATTAAGTTTGGGAATGGAGAGTGGGTGGTGGGCTCTGTGCACTACGAGAGGAAGAACGAGGTATCTCTCTTAATCATCCCTGCAGTCATCGTCCCCATGCTACTCATCATCCTCATTTCTGTCTACTGCTACAGgAGGAAGAGCCAGCAGGCTGAGAGAGAGTATGAGAAGGTGAAACACCAGCTGGAGAATCTGGAGGAGAGTGTACGAGACCGCTGCAAGAAAGAGTTCACAGACCTGATGATAGAGATGGAGGACCATACCAACGACCTGAGCGAGGGGCGAATCCCCTTCCTGGACTATAAGACCTACACGGACCGCGTCTTCTTCCTGCCCTCCAAGGACGGGGCCAATGATGTGATGATCACGGGCAAGCTGGACATCCCTGAGGCACGGAAGGCCATCGTGGCCCAGGCCCTCAACCAGTTCTCCAACCTGCTCAACTCCAAGACCTTCCTCATTAACTTCATCAAGACTCTGGAGGGCCGTCCAGACTTCAACGCCCGGGCCAAGGTGTACTTTGCCTCCCTGCTGACAGTGGCTCTGCACGGGAAGCTGGAGTACTACACTGACATCATGAGGACCTTGCTGCTGGAGCTCATGGGGAACTATGTCGACAGCAAGAACCCCAAACTCATGCTGCGCAGGTCGGAGACCGTTGTGGAGAGGATGCTGTGTAATTGGATGTCCATCTGTCTTTACCAGTTCCTCAAGGACTCTGCAGGGGAGCCCTTGTACAAACTGTTCCGAGCCATCAAGCACCAGATCGAGAAAGGTCCAGTAGACGCCAGAGTGAAGAAGGCCAAGTACACCCTGAACGACACGGGCCTGCTGGGAGACGACGTGGAGTACTGCGTTCTGACTCTGCAGGTGCTGGTGCACGGGGAGGGGCCAGACGTGACGCCCGTCAAGGTGTTGAACTGCGACACGGTGTCCCAGGTGAAGGAGAAGATCATCGAGGCGGTGTACAGGAACCTGCCCTACTCTCAGAGACCCAAGGTGGACAGCGTCACTCTGGAGTGGCGCCCTGGCTCCACGGGGCAGATCCTGTCAGACCTGGACCTGACGTCCCAGAAGGAGGGCAGATGGAGGCGCATCAACACGCTGGCCCACTACAACGTGCGAGACAACGCTACTCTAGTCCTGTCCCGGGTCATTCACACTCAACAGAACTACGACCAGAACCAGGATAACCAAGAGGAGAGAAACTCTTTGTTGGACGACGACAAGGTGTTCCACCTGGTTCGGCCTGATGAGCTGGACGAGATGAAGTCCAAGAGGGGCAGCATGAAGGACAAGTCCATGACCAAAGCCATCACTGAGATCTATCTCACACGACTGCTCTCTGTcaagGGAACACTGCAGCAGTTTGTGGATGACTTCTTCCGCAGCGTGTTGTGTTCCGGGGCGGTGGTGCCGCCCGCCATCAAGTACTTCTTTGACTTCCTGGACGAGCAGGCGCTCAAACATGACAACGTGGACGAGGAGACCATCCACATCTGGAAGaccaacagTTTGCCTCTGAGGTTCTGGGTGAACATCCTGAAGAACCCTCACTTCATCTTCGACGTCCACGTGACGGAGGTGGTGGACGCGTCACTATCCGTCATTGCTCAAACCTTCATGGATGCCTGCACCAAGAGTGAGCACAAACTCAGCAGGGACTCTCCAAGTAACAAActactctatgcaaaggagatctCCACCTACAAGAAGATGGTTGATGAcTACTACAAGGGCATCAGACAGATGGTATCAGTCAGCGACCAGGACATGAACACTCATCTGGCAGAGGTGTCTCGGACTCACACAGACAAACTCAACATACAAGTGGCTCTGTATCAGCTCTACCAGTACGCGAGCAAATACTACGACGGGATCATCCAGTCCCTAGATGAGGACCCAGCAGCCCAGAGTAAACAGCTCACCCTGCGGCTGCAGCAGATAGCAGCCGCCCTGGAGAACAAAGTGACAGATCTCTAACCTACTGGAGGGgccagggagatggagggagggagatggtacCGTGCCTCCAGTGTCCACAGGGGCTTATTTCTCCTGGCAAAGGAGAAAGAAACTGAGAAGATGGCCTCACAGGGCCTTGATGTTGATGATGACACCTTCAACCCAGCAGGCCCAGAATGTGGGACAGTTCAGAGTCTGCGGAGTGGCGCAGTATGGGACCAATGaagcaaagagagagatagatgaggtTGGGTTACACATGCCGTCATAGGTACGCCTTAACTTAAGTCCACTTGCGAAACTGAAATAGGTGGTCCTCATTGCTCACTCTGGCTGTTTCCACAATGCAACAGGAGGCCAGCCGCCGGAAATAAGCCCCTGTGTCGATCACTCATGGCACAAAGAGATAATCAGATGTTCAATTTATTCCTGTCTAGAAAAGTTGTAAGAattgtattatatatattttttattgtgaggTCTTAATGCGGAAAGCTTTACGAGGAGATATTATCTTTTTAAATGGACCGCCTTGTGGTGTGGATTGTGTTTCTATAGCCAGTGTGTGATTGcgggtttgtgtgcgtgtgtgcgtgcacgggATGCCTACTGTCAGGCCACAGGGTGGATGCCCTATCTGTCATTTTAATCTCCACTAGTCACCGACAGACAGGAACCTGTTCTCCCACTGAGCTCCTCTACACAGACCAAAGGGTCATGCCTGGGACAGGCTAACTGACTGGGACAGGATATTAGAAATGACAGGCCGTCAATAGTGATTTTTTTCAAAATGATCGGTTTTTATTTGTGTTTAGAAAATGTGTTCACATGCTTCAGAGCTCGATCGAATGTTGTGGCTGCCAATACACCCGTAGGTCCTTACATTCAGAGATCAATAGCGCATCTGTTTCCCCTTGTAGGAGTACATACTAACACATTCCACTGAAACTTAAGCACTGTATGTATTAAAgggtcaaaaaaatatatacttttgacAACCTTAGTTAGTTTTAccctgcagccccccccccccccccccccccgattctGTGCAAGCAAAATAACAGATAATTGAATATATTTTGAATAATTCCTCTATGTAGCCAGTCAAGCATACATATTTAATAACAGCCGTGCAATAACATCCAAACTTTCAGACACAAGCAATGGGGATCATTCATATCCCACTCGTGTGTGTTACTTATACCATTTGTTGTTAACCATTTCATCTTCAGTAGCGATGCAGCAATACTTTATTTAGGACACGAGTACAAATATGCAGATGTGGGAAATAGAAATAATATGACAGGAGATATCGTACAGTAACCAACTTACTAAGTAATATGGCCATGATGGTACATGCTGTTAATCGTGTTTTGTGTTTCCTTATGCCGTTGTATGCCAAATTACCACTGTCATAATATCCCATAATAAGTTATGTTGTAAGCTTCAAACGGTACTAAATAGAATGGTACTCTTTTCAATGAGTAATGATTTCTACAACATGCATTGGTATGATGTGTCACAATTCAGGTTAATTCATGGTCATAATAATTCATTGCAATACAAATTGATATGGCATTCAAGTAGGCCATAGTTGAGCTGGTGCCTGATTATAATTTGGAGAATTTTTGCCAAGTCAAATCAGTTACATTTTCAATTTTCATCTTTCACGCGACCACAGATTTGTAATTTTCAAGCTCCCTGAATTTGACCATCAGTCAGTGCGTGGTCTAGTGTCAGAATAGATGTTTTAAGTTCCAGACCCCAGAATGTTAGTGATATTCCTGCCTTTGGTAGAGTGAGGTTTGCACAGAGCCTGTGCCTGCCTGTCTCCACAGCAGCTAGCCTGGCACCCTGGCCAAGCCGCACTTGGCACTGCCCACTCAGCACAGAACGGAGTGGCACACTGCATAATGGCATCAGTGGGGGATGTTTTTGCTCTTAATTGCATCCAGTCTGCATCCTCCTCTGACGCTGTTGTTTACCACAGCAGATTCCACTCCTGACCGAGTGATGCAAAAGCTTTTTTCAAGCCTTTCTTTAACCAAAACGTGCCTTATATGATGATAATAATACCATTTGTATTGTTTTATTGGTGATATAACTAAGCGGTTATAGTAATAGAAGACACAGCAATGTATTTGCGATTGTGATATGTATGTGCTATCAACTGCTACAGTTCTGCTGCAGGCATTGCGTGCCAATAGGCTGAAAACATTTCAGTATACTTTCTATGGTTGCATTGATGTGTGCATTTATTTTGGgtgtcagtggtgtgtgtgtgtgtgtgtgttttagtaggATCATGATGGCTATGGCAACAGCCCAAATAAGTGTAAAGCAGTAGCCAACCCCAAACGGTTTCCCCCTAAAATGTCTGGCATTCCTAAATTAGTCTTAAGACAAAGTTACAAATGTAGAATATTGAGTATAGCACAAATGGTTCCAATGTTGTTTTTGCCCCGTGATTCTAAGATGTTCCTCTGTGTGTATGAAAAACGACTATCTATACTCGACAATTACCTTTCTTACTGCTGTGCAGTAATTATTTTCATTTCTTGTTTCCTATAACATATACCTTTGTAAAAAGACAACATGTTGAAATACCGTATTCTAACTGTATAATCCTATGCATTAAGTCCCGGGGGGAGAGAAAAAACGAATTTGTTGTGCTGTTGTCGAGATCTTTCCTTTCCTTGTGAACGTGCCGTGACTTAAGAAAAATGGGACAGGAAATTAGTGCAGGACCTTAATGAAACCCAACATTTTTCTCATCCAAGGCAGCTCAGAAGACGCTGATTATGTTACCTGATCTGTTTGTAACGGATCACTCACTTCTCAAGAGGCTTGTGTGGATGGGGCAATTACATACAGGTTGCATCATCCACTCCTCCATGAATAAACTGAGACATCCATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193207 lncRNA upstream 234484 63196281 ~ 63291298 (+) True G169765
TU193205 lncRNA upstream 245362 63279826 ~ 63280420 (+) True G169764
TU193152 lncRNA upstream 369993 63152147 ~ 63155789 (+) True G169712
TU193151 lncRNA upstream 375723 63095099 ~ 63150059 (+) True G169711
TU193099 lncRNA upstream 474222 63051349 ~ 63051560 (+) True G169675
TU193561 lncRNA downstream 51552 63761681 ~ 63763201 (+) True LOC118941167
TU193429 lncRNA downstream 56854 63766983 ~ 63786331 (+) False LOC110493594
TU193430 lncRNA downstream 56854 63766983 ~ 63787919 (+) True LOC110493594
TU194206 lncRNA downstream 285993 63996122 ~ 63996775 (+) True G170697
TU194262 lncRNA downstream 356360 64066489 ~ 64144121 (+) True G170751
XM_021567905.2 mRNA upstream 250605 63262778 ~ 63275177 (+) False parvg
XM_021567898.2 mRNA upstream 250605 63262782 ~ 63275177 (+) True parvg
XM_021567870.2 mRNA upstream 263471 63249489 ~ 63262311 (+) False parvb
XM_021567887.2 mRNA upstream 263471 63251394 ~ 63262311 (+) False parvb
XM_021567878.2 mRNA upstream 263471 63255879 ~ 63262311 (+) True parvb
XM_036952828.1 mRNA downstream 2925 63713054 ~ 63741924 (+) False tubgcp6
XM_036952830.1 mRNA downstream 2925 63713054 ~ 63741924 (+) False tubgcp6
XM_036952833.1 mRNA downstream 2925 63713054 ~ 63741924 (+) True tubgcp6
XR_005037485.1 mRNA downstream 51603 63761732 ~ 63763204 (+) False LOC118941167
XM_021567959.2 mRNA downstream 56759 63766888 ~ 63787922 (+) False LOC110493594
TU192528 other upstream 740139 62785358 ~ 62785643 (+) True G169130
TU190972 other upstream 1645358 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 1798328 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 1993455 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 2293237 61232196 ~ 61232545 (+) True G167325
TU193588 other downstream 110332 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 163119 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 1821017 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 1883388 65593517 ~ 65640976 (+) False jph3
TU196057 other downstream 1883388 65593517 ~ 65640976 (+) True jph3

Expression Profile