RNA id: XM_036952830.1


Basic Information

Item Value
RNA id XM_036952830.1
length 6928
RNA type mRNA
GC content 0.55
exon number 24
gene id tubgcp6
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 63713054 ~ 63741924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctgtctgtgttgtTTATTTGATGCGGTGAAACTGGGCCTCACTGACAGCCTGGATTGAAGCTCTCTCTTGTGTGAACCCAATTGCTAAATTATATTACTccttctcttttcctcttccaCGACAATCGACGCTGTCCGCTTCTCTGGGCTGGAACACGACGGCCAGAAGAACCCGTGAACAATTTGGACTTGGTAGAGGCTAGCTAAATGTGAATGGAGTGGTTGGTAGATAAACAGTTGAGGTTGGTGGGCAATGTCGGCACAAATACACCGTATTTGACTTGTCTGTCAGTTGTACTTTAGCGCGCAATCATTGTTACCGGAAGTATGTCACACAAACGTACAGGAGTTAACCAATGAAATAGCCTGGTCTGGTATTTTGTCCACTCAGGTTGAGTGGGCGGGTCCAACGTGTAGTTGAGGTGGatgtacatgatacagacaaaaTAACGTACATTTTTGTTTTGAAACGTATTATGATGAACTACAGAAAGTAGATAACTAGTATGCATTAAATAGAGGCAAGTAACAAGTATACTGagacatctagctagctaacttgctaaACACGAATGATCCCTCCGTTACTGAACTAGCTAACAGCACCATCATCATGGAAGGAGGACCGAAAACCAATGTCAGAAGTAATCAATCACATCAACTGACCAGCTACAACCATGTACTCCAGTCCAGATGTCTGCCTTAAATCTGGCAGTCacaacagtagcagtaacagcaaCAGCATCACTGAACTCCTGGGCTCCCTGTGTGACAGCAGCCTCACTGGGGTGTCATGGAAACGTCGTGCTCTAGGAGGGGTGTCTCGAGAGGGGGTCCGCCGCACTCTCAGAAAGCGTGCCTACGGGGCCCTGCTGTCCAAACTGTTCCAGGAGGGCTCCCCGAAAGGGTTATTGTCAGTACCTAGTGCCACGTCCACCACCCCGCCCAGAAACAAGCTACTTATGATATCCTTTGACCTGCGAGTGGCGGGGTGCCAGGACGAGGCCGAGAGGCTGGAGGAGCAGCTGGGGAGGCTAAGTGAGGGGCCCGCCTCGGGTCTGAAGGAGCTGGACTCTGTGCTGGAGCTCTTGGTGCAGCTGACTGGCTCTGCACCCCCACCCCCGGCCTCATTCAGCAGGGACTACATGCGCAGGGAGAGGCCCGTGTTGAGGAGGCCTCCACTGGGGGGCTACCAGAGCGAGGAGCTGCAGAGGTTGGAGGCCCGAGCCTGGGCCCTGATGTGTGGGGAGGAGTGGGGATCCCTGAAGGGTCTGTGTGGGACTCTGGGTCTGATGGATGCTCCTCCGGGCACAGGCCTGCTGGCACTGAGGAGGAGGTCCGATGTAGAGGAGAAGTTTGAGAAGGAGACCAGGATGTCTCTGTTTGGAGCCCTGCAACACTCCCGTACCTCAGACCTGGACATCAGGCTCAATCTGCCTCCTGTTCCCAGCAATGCTGATGTCACTGGGCTAGCCATACGGGTGCCACCTTGTTTGGACCAGTTAGAAGATGAGGGCTTCCAGTCAGCCTCCAACCTAACCCCAGACTCCCAGTCAGAGCCCAGTCCCAGCCCAGAACTTGATGTCTGGGACGCCCTGAGGACTTTTGAGCCTGGGAGACGCCGCTGCTGGGAGTCTGTTGGCTGCCCACCAGGGAAGAGGGAATTCCCCTACCTgacggagggaggcagggaggcttTTGATCAGCTCTACAGGCTGtgggagggggagatgagggtGGTATGCTCTGCCTCCCCTTCGCCCCTCCTGCCCCTGCCTCTGGACTGTCAGACCCAGCTGGTCAGTGACCTACTTAATGTATTGATCGGGGTGGCGTCTACTACCTTCCCCCTCAACCAGGTGTGTGTAAATTTTGACGTTCGACCCGGAGTGTGTGTGTCGGGAGCGTCACCGGAGAGTGTGTCTCGTTTGCTTGGCGAGCTGGCTCAGTATGGCACCCATTACCTGAGGCTCAGTCGCTTCGTTCTGCAGAGTGCCCAAAAGAGAGGTCTAGTCTTCCAGgcGTTTACAGGTGGACTGCGTAAGTACCTGCATTACTACCGGGCCTGTGTCCTCAGCACCCCTCCCACCCTTAGCCTGCTCACCATCGGCTTCCTGTTCCGCAAGGTGGGCCGGCAGCTCAGGTATTTGTCAGAGTTGTGCTGTGTGGATGGGGCATCTGGTGTGGGCCAGGCTACCTTCCCTGTGGGTGTGACGCTGCTCTCCTACCTGTACAACGAGGCCCAGAGCAACTGCAGCAATGAGAACTACCCCGTGCTGCTGTCCCTACTGAAGAGCAGCTGTGAGCCTTACACACGGTTTGTGTCAGACTGGGTGTACAGTGGAGTGTTCCGGGACGTGTACGGAGAGTTCATGATCCAGGTCAACGAAGACTACCTCAGCTTCAGAGACAAGCACTTCTGGGCGCAGGGCTACACACTGATCTCCCGTGATGTGGAGGACTGCGTGCCTGTCTTCCTCCGACACATAGCCAACGACGTGTACGTCTGCGGGAAGACCATCAACCTGCTCAAGATCTGCTGTCCCCAGCATTACATCTGCTGGTCGGAGCTACCCGTGCCTCGCATCGCTGTCACGTTCTCCCTgcaggaggtagaggagatagagagggactgTGCCGTGTACCGAGGACGCATGGAGAGGATCGCCAAGCACAGCGCCACCAGCAGGGAGGAACAGGCCTTGCGCACAGAGCAGGCACGCCAGGAACTGATCAATCAGGTCAGGCAGTCGGCCGCCAAGACCCTGGAGAGCATCCGCGGGCGCCAGGTGTCGCAGCGTCTGGCTGAAGAGGCAAAGAAGAGGGAACGCTTTGAAGAGCTGAGACAGCACTTGGAGCAGGAACaagagTGGCACAGTTTAGCCAGGAGGAAGGAGCAGGAGGATGAATTCAGCTTTGCCAGGGAGCTGAGAGACCGAGAGAAGCGACTACAGGCCCTGGAGGAGCAGCTGGAGATCCGAGCCAGGAAGGAACTGATTGCCCAGTACAGCCACCTATCAGAGGAGGCGGCCAAGAGGGAGTGGCGGGCCATGTGGAGGGTTCAACGAATGAGACTGGACGATTTCCGGGCCCAGTTTCTACAGCAAGACCAACAGGAGACTGAGGCTATTCTGGAGAAGTATCCTGTCGGAGGGCAGAGACCCCCTCTGGAAATACTACAGCCAGCTCCAGCTCAGACCACTCAACcattaacacagGAGTCCCTATCCCCGGAGCCCTGTGAGCAGCAGTCTGAGGAGCCAACCCAGGCCCCCCTTCCCCACCAATCCACTCCCCCAGCACTCCCCACCACGAAACTCGACCTCACCCTCGTCACAGAGCACATCGACGCCAATGACTTCCTGCCCAAGCCGGCCGACAGCCTGCAAGTGGACCAGGCCCTACAGGAAATTGGGTCGGACCTCCCGGAGGCTCTTGCGCCTCATAAACCCGTAGACTATGACTTTAGCGCCCCCTACAGTCCCCTTGAGGGAGTGACGGCCCCGGCCCTGGCTAGACCTTGCTGGGGTCCTGTGGTACAGCCAGACATGACTCACCCTCACATCCCAACCGGTCCCCCTGAGTCCACTCTAGGCATGGGGTGTGTGGTGTCCGGGACTTTAGCTCTCCCGTCTCCGCTACCTGGAAGTACCTACGGCCATTCTTCAGACTCCACTATGGGTGTAGGGTGTGTGGTGTCAGGAGCTGAGGTCCTCCCCAGGCCCAGTCCTCAAGGCCAGGCCTCCCAATCTAGCATCCCCCTGGGCCAGTACTTCTCTGATGTGCCCCTGGCTCTCCACACAGCCAATGTCCACGGACACCCCTCCCAGACCACAGTGCAGCTGGTGGATGGAAGTGAGTCAAAGCAGATGGACAGCAGGCAGGAGAATACGGAAGACCCATCACCTCCAGGGGGCATCGTAAAGGAGGCTGAAGGGACTGTAGAGGCATCATGCCTGGTGGAGATGAAGCCAGCTGAGATGGAGAAACTAGATTGTGTTGGAGCAGAGGAACAGATGGCTGGTTCTCTCAGGGAGGCTTCTGCCTCCTACACCCCAGAGCAGGGCCATGACAGTGGGTATCACCCAGGACAggcctccccttccctctctggaCCCTCCAGTGTGTACGAGCTTCCTACCTCCAACATTCAAGGCCATGCCTCAGATGCTCATATTAAAGTCGGAGAGCACGTTTCAGATGTGGAAGCCCCTCTCCCTTCTCAAAACGTTCATGGTCACTCATCTGATGCTAACATAAAGGTAGGAGAGTTTGTTTCGGAGGTGACTGCTCCTCTTCCGACCGCCAACATTCACGGTCACGCATCTGACGCTCATATTAAAGTTGGAGACCATGTTTCAGAAGTGGTCGCCTCCCTTTTCACCCAGAACATTCACGGTCATGCCTCGGACTCTCACATCAAGGTCGGGGAGCACATGTCAGAAGAGGTCGCCTCCATTCACACCCAAAACATCCACGGTCATTCATCCGACACTCACTTCAAGGCGGGTGAGTTTGTGTTGGACGCAGAGCCCTCCCGACCACGCTGGAGCAAGCATGGTCACGCTTCAGACTGCACACTTCAAGTAGGCTGTGTGATGTCTGGCACAGAACCAGTACTCTCCCCTTTACCTGGTAGCACCTACGGCCATTCCTCTGAGTCCACACTAGGTATAGGGTGTGTTGTCTCTGGGGTTGAACTCCTTCATGCTCCTCTACCTGGAAGTGACTTTGGACACGCCTCAGACTCAACCCTGGGTGGAGggtgtgtggtgtcaggaacGGTAACCCTTCCTTCTCCGATACCCGGAAGTGACTACGGCCATTCGTCAGATTCAGCGATGGGCGGAGGGTGCGTGATATCTGGGATTGAACCTGTTCGCGCTCCTCTTCCCGGCAGCAACTTCGGACAGTCCTCAGACTCCACACTGGGCACAGGGTGTGTGGTGTCTGGTGTAAGCCCTCTGCCCTCCCCCATCCCTGGCAGTATCTACGGCCACAGCTCAGACTCTGCCCTGGGAGGGGGCTGTAAGGTGTCAGGTGTAAACCCTCTGCCCTCCCCCATCCCTGGCAGTATCTACGGCCACAGCTCAGACTCTGCCCTGGGAGGGGGCTGTAAGGTGAAGGAGACTGGTAATGAATACGACGCCAGGACCCTGGAGCAACAGGAGCAGCAGCGGCTGGCCGAGGGCATCTCGTCCTGGGCAGCGGGCTTGGCTCTGTCCCCAGGCGAGAGCTCAGAGAGGGAGTACCTCCGCTCCCTGGCTGCTCAGTACCAGGTGGAGCAGTACGAGGACTGCTACGGTCTCATGACGTTGGCCCCAGAGTGTCACCCCCTGCATCAGGTGACGCGGGGCCCCTGGGGCCTCCCGGTGGACCCATCGCTCCGCAGGGCCACAGACACCACGGTGGTGCAGCTTAGTGGGATGGTCTCCCTGCACGTCCTCATGAAGCACTCTGTCACCACCCCACTCATCacacatgtaTCCTTGGTGAACAAGGCGGTGGTGGACTACTACTTCGTAGAGCTTGGAGTGGAGAGGCATTTTGAGGCCCTCAGGCACTTCTTGCTCATGGAGGACGGGGAGTTTGCCCAGTCTCTCAGTGACCTGATCTTTGAAAAGATGGGCAGTGGTCAGACTCCTGGAGAGCTGTTGACTCCTCTGGTCCTGAACTCCATCCTGAGTAAGGCTCTTCAGTACAGTCTTCATGGAGACAGTTCTCTGGCCCCTAACTTCACCTTCGCCCTGCGTTTCCTCCCGGAGACCTTCCATCCTCACGCCCCCGACGCACTCAACTGCCTGGAGCTACGGTACAAGgtgGACTGGCCGTTGAACATCATAATCACAGACAGCTGTATGAACAAGTACAACCGTCTGTTCTCCTTCCTGCTGCAGCTCAAACACATGGTGTGGAGCCTCAGAGACGTCTGGTTTCACCTCAAGAGGACTGCGCTGGTGAAAGGGGCGGGCCGCTCGGTGCAGTTCCGCCAGCTGCAGCTGTACAGACACGAGATGCAACACTTTGTGAAGGTGATCCAGGGTTACATCGCTAACCAGATCCTGCAGGTGTCCTGGTTAGAGTTCACCACCAAGCTGGCCAGTGCCTCGGACCTGGACGCCATACACCGCACACATGCAGACTACCTCAACAGAGCTATCTTCAGGGGTCTGCTGACAGAGAAGGCAGCTCCAGTCATGAACATCATCCACAGTATCTTCAGCCTGATCCTGAAGTTCCGGGCCCAGCTGATCGCACAGCCCTGGGACAGCCAGCAGGGGGAGGCAGTGCACCCCAGCTTCATCGCCATGCAGCAGTCATACAACACTTTCAAATACTACTCCCACTTCCTCTTCAAAGTGGTGACCAAGCTGGTGAACCGAGGATATCAGCCTCACCTGGAGGACTTCCTGCTCCGCATCAACTTCAACAACTACTACAAAGACTCCTGAACGTACGTGTGTAGAACACTGTGTGCCTGTGTTGTAGATAATCAAGAGTAGCATCTAAACTAATGATTTGTTGAATATTATGTACATGTGTACAAATCTCTCCCCCACACCCATTGCAGTTTGGTAATGTATATTTGTGGCAtgaataatatactgtattaaaaGAAACTATATGCGTTgtatttacattttaaatgtacCTTGACGACCTGTTTTGACAGCTTCAATGTGCCGGGACCATACAGTAGTATTATGCCTCCTGTCCACAATGGTGTCTATCAAAGTCAGTGATAACAACCttatatacaccccccccccatataACATGCTGAATGTAACAACGCTAGCTAAAGCTCAGGTGCCTCTCCTCTGCCCACCCCATTCCTAAGCCCTGTGTGTCAATTAAAGAAATGCTTCATTTTGTGATGTAAAAACAAAACAGGAGTAATAAAATGTCACTTGTATTTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193424 lncRNA upstream 2922 63708288 ~ 63710132 (+) True plxnb2b
TU193488 lncRNA upstream 120792 63590849 ~ 63592262 (+) True G170035
TU193207 lncRNA upstream 421756 63196281 ~ 63291298 (+) True G169765
TU193205 lncRNA upstream 432634 63279826 ~ 63280420 (+) True G169764
TU193152 lncRNA upstream 557265 63152147 ~ 63155789 (+) True G169712
TU193561 lncRNA downstream 19757 63761681 ~ 63763201 (+) True LOC118941167
TU193429 lncRNA downstream 25059 63766983 ~ 63786331 (+) False LOC110493594
TU193430 lncRNA downstream 25059 63766983 ~ 63787919 (+) True LOC110493594
TU194206 lncRNA downstream 254198 63996122 ~ 63996775 (+) True G170697
TU194262 lncRNA downstream 324565 64066489 ~ 64144121 (+) True G170751
XM_036952823.1 mRNA upstream 2925 63525782 ~ 63710129 (+) False plxnb2b
XM_021567905.2 mRNA upstream 437877 63262778 ~ 63275177 (+) False parvg
XM_021567898.2 mRNA upstream 437877 63262782 ~ 63275177 (+) True parvg
XM_021567887.2 mRNA upstream 450743 63251394 ~ 63262311 (+) False parvb
XR_005037485.1 mRNA downstream 19808 63761732 ~ 63763204 (+) False LOC118941167
XM_021567959.2 mRNA downstream 24964 63766888 ~ 63787922 (+) False LOC110493594
XM_021567981.2 mRNA downstream 174001 63915925 ~ 63942569 (+) True mov10l1
XM_021618342.2 mRNA downstream 209017 63950941 ~ 63952742 (+) True LOC110533812
XM_021567998.2 mRNA downstream 247503 63989427 ~ 64092188 (+) False nell2a
TU192528 other upstream 927411 62785358 ~ 62785643 (+) True G169130
TU190972 other upstream 1832630 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 1985600 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 2180727 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 2480509 61232196 ~ 61232545 (+) True G167325
TU193588 other downstream 78537 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 131324 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 1789222 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 1851593 65593517 ~ 65640976 (+) False jph3
TU196057 other downstream 1851593 65593517 ~ 65640976 (+) True jph3

Expression Profile