RNA id: TU194598


Basic Information

Item Value
RNA id TU194598
length 745
RNA type TUCP
GC content 0.56
exon number 4
gene id LOC110501772
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 63958607 ~ 63963969 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGACTGCTGTGCTGTGAGGTGAGTGAGGGCACTTTCCTTAGGGTCACATGAAGGGGATGATCGCAGGGCAGAAGCAGAGCGGGAAGAAGACCATGAATATGGCGACAGTTTCACCTACTCACCCAGGCTTTGGGAGATCAGGGAAGAGCTTCCTCATCGACAATCTGCTGCGCTCGGCGGGgccatcctcttcctcatcctcgcCCAACTCAGATGGACCAACAGgcCTGTTGAGCAATGTGTTTCTACGAGGCCCTCAGTATCTGCTGGCCGCAGTGTGCTGTGGTGGGTCCAGCCCTCCGTCTGTCTTCTCCGAGGGAGCCAACATTCCCATGTGGTCCCCGGATACGAGCCCCAAATCCCGGCGAGGGATCCTGAGGAGGGCGGTGTTCTCTGAGGAACAGAGGAAGGAGCTGGAGAAAACGTTCAAGAGACAGAAGTATATCAGCAAGACAGACAGGAACAAACTGGCAGCAGATCTCAGCCTGAAGGAGTCTCAGGTGAAGATCTGGTTCCAGAACCGGAGGATGAAGTGGAGGAACTGTAAGGAGAAGGAGGCCCACAGCGGCCGCTCCCCCATGGAGGAGCTCATGTCCCGGGGCtgcaaacaggaagaggaggcACCAGAGAGCACGGGCACGGCATTAGACAGATCATCATCGCAGCAgtgggacagggagacaggagttACCATAGAGAAAGAGCCATGCAAGAAACGTGTGACTTTGATACAGCCAATGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193837 lncRNA downstream 55445 63509607 ~ 63904078 (-) True G170356
TU194132 lncRNA downstream 99660 63859632 ~ 63859863 (-) True G170625
TU194070 lncRNA downstream 215237 63741903 ~ 63744286 (-) True G170573
TU194009 lncRNA downstream 224173 63733310 ~ 63735350 (-) True G170520
TU194066 lncRNA downstream 227825 63731314 ~ 63731698 (-) True G170569
TU194672 lncRNA upstream 40451 64004272 ~ 64011133 (-) True G171118
TU194690 lncRNA upstream 120567 64084388 ~ 64085551 (-) True G171136
TU194834 lncRNA upstream 238091 64201912 ~ 64202219 (-) True G171265
TU194848 lncRNA upstream 257553 64221374 ~ 64222667 (-) True G171279
TU194948 lncRNA upstream 415186 64379007 ~ 64381802 (-) True G171378
XM_036952857.1 mRNA downstream 55405 63873240 ~ 63904118 (-) False nuak1b
XR_005037486.1 mRNA downstream 55405 63873240 ~ 63904118 (-) True nuak1b
XM_021567947.2 mRNA downstream 198110 63745050 ~ 63761413 (-) True appl2
XR_005037482.1 mRNA downstream 241356 63717837 ~ 63718167 (-) True LOC118941165
XR_005039524.1 mRNA downstream 446653 63512730 ~ 63512870 (-) True LOC118944230
LOC110501774 mRNA upstream 4908 63968729 ~ 63971324 (-) True LOC110501774
XM_021568010.2 mRNA upstream 138235 64102056 ~ 64167744 (-) False tmem117
XM_036952899.1 mRNA upstream 138235 64102056 ~ 64170220 (-) False tmem117
XM_021568019.2 mRNA upstream 138236 64102057 ~ 64168460 (-) False tmem117
XM_021568039.2 mRNA upstream 216460 64180281 ~ 64188853 (-) True LOC110493646
TU193660 other downstream 808672 63146774 ~ 63150851 (-) True LOC110493507
TU191507 other downstream 2443867 61515237 ~ 61515656 (-) True G168141
TU191442 other downstream 2467852 61490434 ~ 61491671 (-) True G168078
TU191382 other downstream 2659431 61291139 ~ 61300092 (-) True LOC110493186
TU191365 other downstream 2703508 61254512 ~ 61256015 (-) True G168021
TU194766 other upstream 202142 64165963 ~ 64168398 (-) True tmem117
TU195797 other upstream 1121751 65085572 ~ 65086188 (-) True G172141
TU196875 other upstream 1419616 65383437 ~ 65383873 (-) True G173121
TU196928 other upstream 1570650 65534471 ~ 65536781 (-) False zcchc14
TU196931 other upstream 1570650 65534471 ~ 65536781 (-) False zcchc14

Expression Profile