RNA id: XM_036952885.1


Basic Information

Item Value
RNA id XM_036952885.1
length 2945
RNA type mRNA
GC content 0.52
exon number 17
gene id nell2a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 63989427 ~ 64092188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAAAGCGGgtaccgtctctctcctctcctctcctctgtcgcACTCGTGCAGACTGCTGAACAGAGGAGCGTTTCAGGGACTGGGAAGATTGCTTTGTTACAACCTCTATTGCCTACCCACCTGTGTCGCCGACTGACCGATGCCAGTAGTATAACATACCTGTATAAAGTAGCTCGCACTGAATGGAATAATATCTCTTGGTGATCCGGTTATCACAAATGTGGGATTTGTAAAAGGCTACTGAGCTGTTGTGACATCGTTGGATTGAACAGTACTGCCTCTTGGAAGTGGACAAAACATGGACTAATTTTGATTCACAATGGGATTAAAACTATTTCTTGTCCTCGGTTTATTCTGCGTCACCTCAGTTTTAGGTTTCGGGGTTGATCCTGCTCTACGCATCAACGTGTTCGATGAATTGACGCTTGGAGAGGGTTTTGATGGAGTTACTCAAGTCCAGGGCTTTCACAGCGAGTCTCGGGCGTTCCACTTTCAAGGTTCGTCCAGGGAGGTGAAGGCCCCTGAGGATGTGTCTGCGCGGATGCTCCAGAAGTTGAGGGGCCGGACTGAGTTCACCGTGCTGGTCACCCTGAAACAGGAGCACCTCAACTCTGGGGTCATCCTCTCCATCCACCACTCTGAACAGAGGTTCCTGGAGTTGGAGAGCAGTGGGCAACGCAGTGAGGTGCGTCTCCACTACCGCACCAAGGGTCAGCAGGCCCACACTGAGGTGTTTCCCTACAGCCTGGCAGACGGACAGTGGCACAAGGTCTCTGTGGCAGTCAGCGCCTCCCACATCATATTGCATGTTGACTGCAACAGGATCTATGAGAGGGTGGTGGAGATCCCGTTCATGGACATACCTGATGACGCAGCTTTCTGGCTGGGACAAAGGAACAGCGCCCATGGCTTCTTCAAGAATGGCACAGTGCAGTGTGAGACCATCTCCTGCCCATCCCCTCAGTGCCCAGCGGGCACCACGCCTGCCTACGTGAAGGGCGCCTGCTGCATGGAGTGCCAACTGGTATGCCTGTTCAAAAAAGAAGAGTTGGTGGAGGGAGCTCAGAAAGCTGTACGCGACAACTCCGGCAGATGCCAGCTGTCCGAGTGCAGGGAGACGGCTATGCATCGGGTCGTCATGACTACCCCCTGCCCTGAGCTCAACTGTCCAGAGTCCGAGCAAGTCAACCTCACCGACAGGTGCTGCAAAGTCTGCAGAGGTCATGATTTCTGTGCAGAGGGTCACGACTGTGTGGAGCACTCTGACTGTATTAACTTGGAGGCTGGGGCCCGCTGCAGCTGCAAGGATGGCTTCCGCCCGCTCAGAGATGACAACGCATACTGCGAAGaTATCGACGAGTGTGCGGAGGGGAAACACTACTGCAGGGAGAACACCGTGTGTGTCAACACCCCCGGATCCTTCATGTGCATCTGTCACAGGGGATACATCAGGATCGATGACTACTCCTGCACAGAGCATGATGAGTGTGTGAGTGGACTACACAGCTGCGACCAGAATGCCCTTTGTTTCAACAAGGTGGGAGGGCACAGTTGCTCCTGTAAGCCAGGATACACTGGTAACGGCACCGTCTGCAAAGCGATGTGCGATGGCCTGTGCCAGAATGGAGGAACCTGCATCTCCCCAAACAACTGCATCTGCCAGCAAGGCTTCACAGGGAAGAGGTGTGAGACAGACATTGATGAGTGTTCTGATGGGTTCGTGGAGTGTAATGACAAAGCCATCTGTGTCAACCTGCCCGGCTGGTACCACTGCGAGTGTCGTGATGGCTACCACGACAATGGATTGTTCTCGGCCAATGGGGAGTCGTGCATAGATATCAACGAATGCAAGATGGAGAGGAACACCTGTGCCAATGACACAGTGTGCTTCAACTTGGAGGGGGGCTATGACTGCAGGTGCCCCCACGGGAGGAACTGCACTGGAGACTGTATCCttgacaacaaagtcaaacaCAACAGGCAGATCTGGGTGCTGGACAACGATAGGTGCTCCGTCTGCTCCTGTCAgACTGGCCAGGTGATGTGCAGGAGgatggtgtgtgactgtgagaaCCCCACAGCTGACCTGTTCTGCTGTCCAGAGTGTGACCCTCGCCTCAGCAGCCAGTGTCTGCACCAGAACGGCCTGCTGACCTACGGCAGTGGAGAGTCCTGGGTGGAGAACTGCCAGCAGTGCCAGTGTCTGCAGGGTCAGGTGGACTGCTGGCCTTTGTCGTGCCCGCCAGTGGACTGTGAGTTCACGGTGGTGCCCGAAGGCGAGTGCTGTGCCCGCTGCATCATCGACCCCTGCCAGGCCGACACCATCCGCAACGACATCACCAAGACGTGCACGGACGAGCACGGCATCCAGCGCTTCAGCGGCTCCTCCTGGGTCAAACATGGCACTGAATGCACCCTCTGCCAGTGCAAGaATGGACATATCTGTTGCTCAGTGGACCCCATGTGCCTTTAGTTCCTGAAGCTCTGAAGGCACCTCCCTGTACATTGTTATCCATGTAAAAACAACTTGCATTTTCCACCCTCCTGTCCAACTTCTTTATACCAAATACAAACATGTATCATAGAACACAGATGATGAACTACAGTAGGCCTTCCCACATGCCCCCTCTCTGTGTTCAGCCTCACCAATCAGGGTGACCCATGTGCATTGAGGAACACCCCCGAATCATCTGCAACATGACACTGTAAAATACTATTATGCTGGCATGACTGTGCTCATCGTAGAAACATTTAGCTGATTTCTAAACTTTTAATCTCTAAATGATATCCTAGGTAGTGATCGTTTTAGTCTTCATTTTAATTTGCCACATTATGAAAGTTGTCTATATTTTGTGGTCCTCTGTAGGATTACTttccattttgtatttatttcaagGCTTGTTATTGTGTAATAGTGAAATAAAGTATTTCCATTTACATTAA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005509 calcium ion binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193430 lncRNA upstream 201508 63766983 ~ 63787919 (+) True LOC110493594
TU193429 lncRNA upstream 203096 63766983 ~ 63786331 (+) False LOC110493594
TU193561 lncRNA upstream 226226 63761681 ~ 63763201 (+) True LOC118941167
TU193424 lncRNA upstream 279295 63708288 ~ 63710132 (+) True plxnb2b
TU193488 lncRNA upstream 397165 63590849 ~ 63592262 (+) True G170035
TU194286 lncRNA downstream 9899 64102087 ~ 64104111 (+) True G170774
TU194380 lncRNA downstream 287807 64379995 ~ 64381175 (+) True G170865
TU194485 lncRNA downstream 298952 64391140 ~ 64395041 (+) True G170953
TU194493 lncRNA downstream 310288 64402476 ~ 64403416 (+) True G170961
TU194519 lncRNA downstream 359240 64451428 ~ 64455336 (+) False G170981
XM_021618342.2 mRNA upstream 36685 63950941 ~ 63952742 (+) True LOC110533812
XM_021567981.2 mRNA upstream 46858 63915925 ~ 63942569 (+) True mov10l1
XM_021567959.2 mRNA upstream 201505 63766888 ~ 63787922 (+) False LOC110493594
XR_005037485.1 mRNA upstream 226223 63761732 ~ 63763204 (+) False LOC118941167
XM_036952833.1 mRNA upstream 247503 63713054 ~ 63741924 (+) True tubgcp6
XM_021568059.2 mRNA downstream 77076 64169264 ~ 64180203 (+) True LOC110493658
XM_036952909.1 mRNA downstream 158570 64250758 ~ 64379363 (+) False LOC110493669
XM_036952911.1 mRNA downstream 188544 64280732 ~ 64379363 (+) True LOC110493669
LOC110493690 mRNA downstream 311931 64404119 ~ 64406404 (+) True LOC110493690
XM_036934108.1 mRNA downstream 335703 64427891 ~ 64428722 (+) True LOC118936791
TU193612 other upstream 111194 63873248 ~ 63878233 (+) True G170150
TU193588 other upstream 159107 63820461 ~ 63830320 (+) True G170131
TU192528 other upstream 1203784 62785358 ~ 62785643 (+) True G169130
TU190972 other upstream 2109003 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 2261973 61726959 ~ 61727454 (+) True G167609
TU196081 other downstream 1438958 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 1501329 65593517 ~ 65640976 (+) False jph3
TU196057 other downstream 1501329 65593517 ~ 65640976 (+) True jph3
TU196344 other downstream 1843408 65935596 ~ 65936133 (+) True G172639
TU196564 other downstream 2170438 66262626 ~ 66266023 (+) True LOC110494096

Expression Profile