RNA id: XM_021568019.2


Basic Information

Item Value
RNA id XM_021568019.2
length 5028
RNA type mRNA
GC content 0.45
exon number 8
gene id tmem117
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 64102056 ~ 64170220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCCGGATATAAATACAGATTTCataaggaaataaataaatatcgcATTAGGGAAATCACCCTGCCACCAGTGGAAGCTCAATGTGTTTGTTACATTGCAACGCACTGATGGTTTGCGCCCGTCGTTCGGATAGAAGCATATATCCACAGCGCGCCTCTCCAGCGTCATCACCACAGACAGAGACCAGTGCTGACAAAGCAGCGCCTCGCTGCCATGCCCCGCCGCTGCATGGACAGCCAGCACAATGGCAGAGGATTTGGGGGGTGCCTCTGTTTTAGCAACAACAGGTCGCATGGATAATCCCGCCACAGCCGAGCCAGCCGTGTTTACCCCTCTCGTAGTTACGACGATTAGAGCGCCGCTGTCGGCTCGCAGGGCTTGAtgaggcaggagagagagccGAGCGGGGCTTCTCGTCCTTACAATACCGATTGAGAGGGAAACGCAAAGCAGCGTGGAACGGgTGGACTGTGGCTTGGGGTCCTTCAAGATGGATATAGATCCCTGCTTCCGCTATTATTTCCAGCACCCATGGTCCCGTCTGTTCGTGGCCTATCTCGTCACCTTCTGCAACTTCCTCATCTTCGCCGAGGACCCTGTCTCCCACAGCCAGACGGAGGCTCACATGATCGTGGTGGGAAACTGCTTCTCCTTCATAGTGAACAAGTACCCTGGCGGAGGATGGAGCGTCCTGAAAGTCATGTCGTGGCTGATGGCCATTGTCACTGGAATGTTTGCCGGGAAGTTCATATTCCACCGCAGGCTCTTTGGTCGTTATCTGCGTCTGAAAATGTTCCGTGAGGATCACGGCTCCTGGATGACCATGTTCTTCAGCaccatcctcttcctcttcatcttctCACACATCTACAACCTGATCCTCCTGATGGCAGGAAGCATGGGGCCTCACATGGTGACAGAATACATGGGTATCAGGAACGAGAGCTTCATGAAGATTGCAGCAGTGGGGACGTGGATGGGGGACTTTGTGACTGCGTGGATGGTCACTGACATGATGCTCCAGGACCAGCACTACCcagactggggcaaagctgccagAAGGTTCTGGAAACAAGGCAATCACAGGATAATCCTCTTCTGGACGGTCCTGATCACTCTGACGTCGGTGGTGTTGCTGGTCATCAGTACTGACTGGATCAGCTGGGACAACCTGAACCGCGGCTTTCTGCCTAGCGACGAGGTCTCCAGGGCCTTTCTGGCTTCCTTCATCCTGGTCTTTGACCTGCTCATTGTCATGCAGGACTGGGAGTTCCCTCAGTTCATGGGCGACCTTGATATGAACCTGCCTGGCATGTCCACCACACAGCTCAAGTTCAAACTTCCTGTGTGCAAGAGCATCTTCAAAGAGGAGTACCACATTCATATCACAGGTAAGTGGTTCAACTACGGCATCATCTTCCTGGTGTTGATCCTGGACCTGAACATGTGGAAGAACCAGATCTTCTACAAGCCCTACGAGTACGGCCAGTACGTTGGTCCAGGGGAGAAGATCTTCACCGTGGAGGAGCCCCACACGCTGGGTGACTTCAACCGCAGCACGCTCACCTACAAGTGGCGCTCCAGCAACGTAGATCCGCTGACCAACCGTTCGTATGTCCATCGGGACATGTTCCTGCACAGCCGCTACGTGGGCGCCAGCCTGGACATCAAGTGCCTGGCCTTCATCCCCAGTCTGGCTGCCTTTGTTCTCTTTGGCTTCTTCATCTGGCTGCTGGGACGTTTCCAGGACAGCGAGACCTTCCCGGAGAGCCAGGTGGACAAGACGTACGAGAGGATTAAGAGGAAGTCTCCGTCGGAGTATAGTAAGGACATGGGGGTCACGCCAGAGGAGGTGCACATCTCTATGAGCGAGACGCTCAAACGTTCCGGAACCCCCATGCTGCTGTCAGTCGACGGGCACTTGGCTCCGCACACCGCCAGCTCCACCAACTCCATCTCGCCTGTTTCCACGGAGACCCAGGAGACGCACCCCAGCATAGTCATTGACAGCGTGGAGACGGGAGAACCAGCGGTTTCCTTTGAAGTCAGTAAACTGTCACCGCCCTGACCTTACTGCCCTTAGGGAAAATACTGCCACTGTCTGCTGCTGACAGACACATAGCCTGAAGGGAGGGCACGAGACCAGAGAATAGAGACTAAGACCAAACTGAAAGACAATTTCAGTCCAGATCTTTTCAGTCTGGGTGGATATTGAACACAACACTGATTGAGTGTTCCTACAGCAGAGGATGTAGCTACACTGGCCTCTTGGGTTCTTCTGGACTATTTGGTTTTGCGACCAGTCTTTTTGTAAGACCGTGTTTTTAAGATCTCTAAGGTGACACCAACACAATGACAAACAGGTTATTTTTAACCTCCCTCACTGCAAAGTCATATTGTCAACATGGTGCTATCGCTTGATTTGACGTTTTTCTAATAACACGGTGTATTTTCTTATCGTGACGCATTTTGGTGCCTGTGTGGGAGAACTACTTCTACAGTCGATCGTGACCTCGGGACTATAAGGCTCTATCGGCGCAAAGAATAGTTCTGAGATATTGAGCATGAAAGTTTTCACATTCCAGATCTCAGAACTGTTTTGTAGTGAATTCTTCATTCATAACCTATTAAGGTCCTCACCTTAAAGGTACCTAAATTGCAGAGTACCAAAATCCTAAGACATttgtaaatcttttttttttttgcaaacgcAGATAGAAAcgcagatagaaccttatggTTCATAAGGTTATAGAACCTTATGGTTCTGAGATGTCAATCTGGCTTCAGCCATAAGATTCTATCTGCCACAGAATGTTGCAATTATTTCAATTTCAAAAGAAAAGTACAATCATGTAAGGATTAAATAAAGAGAATACCCTTCTTTCCAATCACATCATCAAATATATGAATTAATGTTCATCACACATCTGATGAACTGACAGTTCACTAAAATGACAAATACAATATATCCTAATAGCATCATTGCTCTGGATGAGTAAACGGACATATTTTTCTGGTCTCTGACACCCAAAGTCAATAAACTACTTCCTAGTTATCAATCAAATGTGTTACTGTACGTTAGTCATTTTGGTGAAATACTCCTTCCATGGAGGTTTTTCGTATTGATATAGAACAAGATATAAACAGCAATGCCTCTCCAATGGGCCTTAAACATGGTCTAAGGCTcctgtgtttatttttttttaccataaagGGCTTAAGTGATGGCCATTCTTCTGTAAAAGTGATGAAAAAAATCAGTCATTGCAAAAGAGGACCAGAACCTATGATATCAATAATCGAGGACTTTGGggtataaggttctatctgcaaaatGTATGGTTTTGAGATAATAAGTATTTTTCAAGTCCCAGATTTCAAGACTGTTTTGTGATGTCTTCCTCTTTCATGACTCAAAAAGTATATCACCTTACTAACAATAGTTTTTGATTGACAACCCATTCTTGTGTGATTGGATTGCAGATAGTACCTTACAGCGCCAAGTTCAAAGGTGTTTGTGCAGATAAAACCTTCAGATATTCTTTCCATGGTGAATGGACTTTTTCACAAATCAGACATATTTTACATGTGAAGGACCTAAAGTGCAACTCTTTTGTGAATAATTAGTTTaaaaccttatagtcccaaggtcTCGTGATGCATGACACCCAATTGTCATGGCTAGTTTATTGTAACACTGCAGTTTTACAGCTGAAGAGGTGGCCTTGATAACCCACATCCACTAAAGGACCCACGTCCAAAATACAGTATTATAGCTTACAGTCTATAGCTGCAGCAAAACAAATGATGTCTGATAGTATGTGTCTGTCTTGTTCATTTTCAGTGTTTCACTTGACTACGTTTACCCTTTCAGACTTCATGACTGATTTATCAATTCATTTGTCATCCTTGATAATTCTCACATATCCCATCTTCATGCGTTTATTTTCTTGTAGTCATAGAAATGACTGGATTGCTAAGcctcatgatgatgatgataataatactaTCATGATGACCTATTTATTTTCTGGATGTAAGATAGCTCCTAGGCATCATCTATTTTCAAATAACAAACAAAGTCACCTCATGGTCGCTTATCTATCTGGTAATTATACTCAAACAAATGCAAATGAATGAAAGGTAATTTGCCCTTGGCCTGGTAAATGTGCTTTTGTTATACAAGGGGGGAGAAGTTCACCAAATCTAACTGCTGCACCTAATTGCTGCACCCATATCATATAccccagcagtatactgtatgtaccaCAATTACGACCCTGGTTCAAAGCCAGTATTGGGGTCATGGTTTGGTTTGAGAAGGACACATGGAGACCTATTTACTTACAGCTGACAAGCAAAAGGTAGTGGGAGTTGTGAAAGTTGTTATATCACATACGTTAGGTGTGTAACTACTGTATACCAATGCTCTGTTTTTGAAGTGTTTTCTAAcaatgcctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtcagagagggtGAGGATGGCCAATTCTGTGAAGAGGTCAATGTAGTCAACATAAGTGGTGTATGACCCTTGGTTCAGTGATCCCCTTCTACACTTTACAGATCAAAGTCCTCCATTACAGCTCAACTTATTTCATTTTGGAGATATGGCTGTGCAACAGGCAACACATTGCTAAGTGTATGGGGCAATGGCTAAATGAGTGTGTTTATCTCACTTTAAGTAATCTAGTGATATATTTGTAATGTATTGTGCTGAAACTGAATGTTCCCCCTGCTGTTATACATGGTATTGTATTGCATAACTGACAGATAGTTTGCatccttgtgtgtgtggttgtgtgttttttAATAAACAAAGGATATCTCTTTTTAACATGTTGGCTACAATAAATGTCCGTTGAATAATGCTATCAATAAAATGACATTTTGCTACAGGCTAGTGTGACGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194690 lncRNA downstream 16506 64084388 ~ 64085551 (-) True G171136
TU194672 lncRNA downstream 90924 64004272 ~ 64011133 (-) True G171118
TU194132 lncRNA downstream 242194 63859632 ~ 63859863 (-) True G170625
TU194070 lncRNA downstream 357771 63741903 ~ 63744286 (-) True G170573
TU194009 lncRNA downstream 366707 63733310 ~ 63735350 (-) True G170520
TU194834 lncRNA upstream 33452 64201912 ~ 64202219 (-) True G171265
TU194848 lncRNA upstream 52914 64221374 ~ 64222667 (-) True G171279
TU194948 lncRNA upstream 210547 64379007 ~ 64381802 (-) True G171378
TU194927 lncRNA upstream 219698 64388158 ~ 64389035 (-) True G171357
TU194996 lncRNA upstream 302136 64470596 ~ 64471072 (-) True G171416
LOC110501774 mRNA downstream 130733 63968729 ~ 63971324 (-) True LOC110501774
XM_036952873.1 mRNA downstream 138088 63958607 ~ 63963969 (-) False LOC110501772
XM_036952866.1 mRNA downstream 138088 63958609 ~ 63963969 (-) False LOC110501772
XM_036952857.1 mRNA downstream 197939 63873240 ~ 63904118 (-) False nuak1b
XM_021568039.2 mRNA upstream 11821 64180281 ~ 64188853 (-) True LOC110493646
XM_021568081.2 mRNA upstream 221691 64390151 ~ 64400478 (-) True tesmin
XM_021568113.2 mRNA upstream 237600 64406060 ~ 64410316 (-) False LOC110493697
XM_021568122.2 mRNA upstream 237603 64406063 ~ 64410316 (-) True LOC110493697
XM_021568132.2 mRNA upstream 282842 64451302 ~ 64469580 (-) False ppp6r3
TU194598 other downstream 138236 63959523 ~ 63963821 (-) True LOC110501772
TU193660 other downstream 951206 63146774 ~ 63150851 (-) True LOC110493507
TU191507 other downstream 2586401 61515237 ~ 61515656 (-) True G168141
TU191442 other downstream 2610386 61490434 ~ 61491671 (-) True G168078
TU191382 other downstream 2801965 61291139 ~ 61300092 (-) True LOC110493186
TU195797 other upstream 917112 65085572 ~ 65086188 (-) True G172141
TU196875 other upstream 1214977 65383437 ~ 65383873 (-) True G173121
TU196928 other upstream 1366011 65534471 ~ 65536781 (-) False zcchc14
TU196931 other upstream 1366011 65534471 ~ 65536781 (-) False zcchc14
TU196932 other upstream 1366011 65534471 ~ 65536781 (-) False zcchc14

Expression Profile